2-241976298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976298
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976298
    reference: chr 2
allele count: 3
allele frequency: 2.69939533544486e-5
allele num: 111136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.897C>T
  hgvsp: ENST00000342631.6:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.897C>T
  hgvsp: ENST00000310397.8:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.897C>T
  hgvsp: ENST00000401884.1:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.897C>T
  hgvsp: ENST00000405547.3:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3278G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.234C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys299Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

2-241976304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976304
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976304
    reference: chr 2
allele count: 6
allele frequency: 5.777007510109763e-5
allele num: 103860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.903G>A
  hgvsp: ENST00000401884.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3284C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.903G>A
  hgvsp: ENST00000310397.8:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.903G>A
  hgvsp: ENST00000342631.6:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.240G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.903G>A
  hgvsp: ENST00000405547.3:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19967
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30042
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13478
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser301Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

2-241976313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976313
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976313
    reference: chr 2
allele count: 3
allele frequency: 3.002642325246217e-5
allele num: 99912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.912G>A
  hgvsp: ENST00000405547.3:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.912G>A
  hgvsp: ENST00000310397.8:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.912G>A
  hgvsp: ENST00000401884.1:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.249G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3293C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.912G>A
  hgvsp: ENST00000342631.6:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27997
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 235
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genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr304Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

2-241976318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976318
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976318
    reference: chr 2
allele count: 2
allele frequency: 2.068765774339029e-5
allele num: 96676
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.917G>A
  hgvsp: ENSP00000308893.8:p.Arg306Gln
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.917G>A
  hgvsp: ENSP00000384871.1:p.Arg306Gln
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3298C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.917G>A
  hgvsp: ENSP00000342992.6:p.Arg306Gln
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.254G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.917G>A
  hgvsp: ENSP00000386007.3:p.Arg306Gln
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10359
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14743
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19824
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Arg306Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-241976321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976321
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976321
    reference: chr 2
allele count: 1
allele frequency: 1.064962726304579e-5
allele num: 93900
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3301C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.920G>A
  hgvsp: ENSP00000308893.8:p.Arg307Lys
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.920G>A
  hgvsp: ENSP00000342992.6:p.Arg307Lys
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.920G>A
  hgvsp: ENSP00000386007.3:p.Arg307Lys
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.257G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.920G>A
  hgvsp: ENSP00000384871.1:p.Arg307Lys
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13398
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg307Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

2-241976322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976322
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976322
    reference: chr 2
allele count: 1
allele frequency: 1.065961710655353e-5
allele num: 93812
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.921G>A
  hgvsp: ENST00000401884.1:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.921G>A
  hgvsp: ENST00000342631.6:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.258G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.921G>A
  hgvsp: ENST00000405547.3:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.921G>A
  hgvsp: ENST00000310397.8:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3302C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12360
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21860
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg307Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

2-241976342-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976342
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976342
    reference: chr 2
allele count: 1
allele frequency: 1.246105919003115e-5
allele num: 80250
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3322A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.931+10T>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.268+10T>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.931+10T>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.931+10T>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.931+10T>G
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22567
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3999
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30382
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-241976344-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976344
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976344
    reference: chr 2
allele count: 10
allele frequency: 1.293460264900662e-4
allele num: 77312
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3324C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.268+12G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.931+12G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.931+12G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.931+12G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.931+12G>C
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23026
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16365
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4725
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-241976352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976352
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976352
    reference: chr 2
allele count: 2
allele frequency: 2.890340482108792e-5
allele num: 69196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.268+20C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.931+20C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.931+20C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.931+20C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3332G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.931+20C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22737
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4639
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28664
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-241976353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976353
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976353
    reference: chr 2
allele count: 7
allele frequency: 1.011472993671069e-4
allele num: 69206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.268+21G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.931+21G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3333C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.931+21G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.931+21G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.931+21G>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22719
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-241976354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976354
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976354
    reference: chr 2
allele count: 1
allele frequency: 1.445755262549156e-5
allele num: 69168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.931+22G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.931+22G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.268+22G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.931+22G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.931+22G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3334C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4005
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

2-241976358-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976358
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976358
    reference: chr 2
allele count: 2
allele frequency: 3.067108330266225e-5
allele num: 65208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.268+26C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.931+26C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.931+26C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.931+26C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3338G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.931+26C>G
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21708
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4670
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8787
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

2-241976358-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976358
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976358
    reference: chr 2
allele count: 1
allele frequency: 1.533554165133113e-5
allele num: 65208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.931+26C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.931+26C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.931+26C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3338G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.268+26C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.931+26C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8787
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4670
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4179
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

2-241976372-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976372
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976372
    reference: chr 2
allele count: 3
allele frequency: 6.144770800049158e-5
allele num: 48822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.931+40G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3352C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.931+40G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.931+40G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.268+40G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.931+40G>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5486
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4066
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11088
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

2-241976589-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976589
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976589
    reference: chr 2
allele count: 2
allele frequency: 8.658758334054896e-5
allele num: 23098
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3569G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-68C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-68C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-68C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-68C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-68C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19781
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3915
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23560
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-241976590-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976590
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976590
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 23060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-67G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-67G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-67G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-67G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-67G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3570C>T
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19737
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23564
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5845
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-241976593-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976593
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976593
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 23100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-64C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3573G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-64C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-64C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-64C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-64C>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19900
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5844
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/2-241976608-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976608
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976608
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 22924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-49C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-49C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-49C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3588G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-49C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-49C>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19193
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21506
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-241976609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976609
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976609
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 22700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-48C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-48C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-48C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-48C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-48C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3589G>A
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21707
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18692
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

2-241976615-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976615
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976615
    reference: chr 2
allele count: 12
allele frequency: 3.216295899222728e-4
allele num: 37310
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-42C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-42C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-42C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-42C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-42C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3595G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27346
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9273
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4749
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14746
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

2-241976615-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976615
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976614
    reference: chr 2
allele count: 13463
allele frequency: 3.608415974269633e-1
allele num: 37310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-39delG
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-39delG
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-39delG
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-39delG
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3596delC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-39delG
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 1.25e1
  variant carriers: 5728
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 2.5e0
  variant carriers: 894
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 445
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 27346
  bin: 7.5e0
  variant carriers: 8798
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.75e1
  variant carriers: 862
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 1.75e1
  variant carriers: 1466
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 2.25e1
  variant carriers: 886
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 182
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 5.25e1
  variant carriers: 743
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.75e1
  variant carriers: 318
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 6.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 14746
  bin: 2.25e1
  variant carriers: 1273
genotype quality: GenotypeQuality
  all individuals: 9273
  bin: 7.5e0
  variant carriers: 393
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.75e1
  variant carriers: 458
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 4.75e1
  variant carriers: 427
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 3.25e1
  variant carriers: 538
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.25e1
  variant carriers: 433
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 1.25e1
  variant carriers: 574
genotype quality: GenotypeQuality
  all individuals: 4749
  bin: 2.5e0
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 8.75e1
  variant carriers: 1301
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 7.75e1
  variant carriers: 695
num of homozygotes: 1947
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: CG
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

2-241976616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976616
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976616
    reference: chr 2
allele count: 1
allele frequency: 6.777822963264199e-5
allele num: 14754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3596C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-41G>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19234
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14662
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-241976620-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976620
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976619
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 40604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-34delC
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-34delC
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3601delG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-34delC
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-34delC
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-34delC
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28624
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8998
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: TC
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

2-241976623-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976623
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976623
    reference: chr 2
allele count: 6
allele frequency: 1.43143429716576e-4
allele num: 41916
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-34C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3603G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-34C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-34C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-34C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-34C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9076
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8766
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 7902
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24929
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-241976624-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976624
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976624
    reference: chr 2
allele count: 3
allele frequency: 7.064807837226828e-5
allele num: 42464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-33G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-33G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3604C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-33G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-33G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-33G>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8879
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8455
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29860
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25498
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

2-241976626-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976626
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976626
    reference: chr 2
allele count: 3
allele frequency: 6.877263765989639e-5
allele num: 43622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3606G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-31C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
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genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6639
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

2-241976627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976627
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976627
    reference: chr 2
allele count: 4
allele frequency: 9.022827754218172e-5
allele num: 44332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-30G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-30G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-30G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-30G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-30G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3607C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30668
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9047
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7895
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28024
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

2-241976629-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976629
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976629
    reference: chr 2
allele count: 1
allele frequency: 2.183787561146052e-5
allele num: 45792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-28T>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3609A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-28T>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-28T>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-28T>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-28T>C
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9018
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29065
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5310
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

2-241976635-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976635
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976635
    reference: chr 2
allele count: 1
allele frequency: 2.039484418339044e-5
allele num: 49032
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3615G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-22C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-22C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-22C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-22C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-22C>G
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4016
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3699
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

2-241976637-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976637
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976637
    reference: chr 2
allele count: 1
allele frequency: 1.991714467813894e-5
allele num: 50208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.1C>T
  hgvsp: ENST00000401644.2:c.1C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-20C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-20C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-20C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-20C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-20C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3617G>A
canonical: false
consequence: coding sequence
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3681
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ter1Ter
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

2-241976640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976640
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976640
    reference: chr 2
allele count: 3
allele frequency: 5.716463414634147e-5
allele num: 52480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-17C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-17C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.4C>T
  hgvsp: ENST00000401644.2:c.4C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-17C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3620G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-17C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-17C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30383
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser2Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

2-241976645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976645
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976645
    reference: chr 2
allele count: 2
allele frequency: 3.493815945775976e-5
allele num: 57244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.932-12C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.269-12C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3625G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.932-12C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.932-12C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.9C>T
  hgvsp: ENSP00000384789.2:p.Pro4Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.932-12C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28585
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro4Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-241976658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976658
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976658
    reference: chr 2
allele count: 2
allele frequency: 2.914432268594078e-5
allele num: 68624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.933C>T
  hgvsp: ENST00000342631.6:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.933C>T
  hgvsp: ENST00000310397.8:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.270C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.933C>T
  hgvsp: ENST00000405547.3:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.22C>T
  hgvsp: ENST00000401644.2:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.933C>T
  hgvsp: ENST00000401884.1:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3638G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24461
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24838
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
hgvs: c.933C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

2-241976659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976659
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976659
    reference: chr 2
allele count: 2
allele frequency: 2.869440459110474e-5
allele num: 69700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.271G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3639C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.934G>A
  hgvsp: ENSP00000384871.1:p.Val312Met
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.934G>A
  hgvsp: ENSP00000342992.6:p.Val312Met
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.934G>A
  hgvsp: ENSP00000386007.3:p.Val312Met
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.934G>A
  hgvsp: ENSP00000308893.8:p.Val312Met
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.23G>A
  hgvsp: ENSP00000384789.2:p.Val9Met
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20531
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val312Met
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/2-241976667-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976667
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976667
    reference: chr 2
allele count: 1
allele frequency: 1.28952390777325e-5
allele num: 77548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.942A>C
  hgvsp: ENSP00000342992.6:p.Glu314Asp
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.942A>C
  hgvsp: ENSP00000308893.8:p.Glu314Asp
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.279A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3647T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.942A>C
  hgvsp: ENSP00000386007.3:p.Glu314Asp
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.942A>C
  hgvsp: ENSP00000384871.1:p.Glu314Asp
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.31A>C
  hgvsp: ENSP00000384789.2:p.Glu11Asp
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23824
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21318
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu314Asp
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

2-241976667-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976667
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976667
    reference: chr 2
allele count: 1
allele frequency: 1.28952390777325e-5
allele num: 77548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.942A>G
  hgvsp: ENST00000405547.3:c.942A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.942A>G
  hgvsp: ENST00000310397.8:c.942A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.279A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.31A>G
  hgvsp: ENST00000401644.2:c.31A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.942A>G
  hgvsp: ENST00000401884.1:c.942A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3647T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.942A>G
  hgvsp: ENST00000342631.6:c.942A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20513
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu314Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

2-241976680-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976680
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976680
    reference: chr 2
allele count: 1
allele frequency: 1.16819700474288e-5
allele num: 85602
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3660G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.955C>T
  hgvsp: ENSP00000308893.8:p.Pro319Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.955C>T
  hgvsp: ENSP00000386007.3:p.Pro319Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.955C>T
  hgvsp: ENSP00000342992.6:p.Pro319Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.44C>T
  hgvsp: ENSP00000384789.2:p.Pro16Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.955C>T
  hgvsp: ENSP00000384871.1:p.Pro319Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.292C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29752
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro319Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-241976699-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976699
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976699
    reference: chr 2
allele count: 1
allele frequency: 1.113436957199483e-5
allele num: 89812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.974C>G
  hgvsp: ENSP00000384871.1:p.Thr325Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.311C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.974C>G
  hgvsp: ENSP00000342992.6:p.Thr325Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.63C>G
  hgvsp: ENSP00000384789.2:p.Thr22Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3679G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.974C>G
  hgvsp: ENSP00000308893.8:p.Thr325Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.974C>G
  hgvsp: ENSP00000386007.3:p.Thr325Ser
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28712
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr325Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

2-241976709-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976709
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976709
    reference: chr 2
allele count: 185
allele frequency: 2.037400057267461e-3
allele num: 90802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.984C>T
  hgvsp: ENST00000401884.1:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.984C>T
  hgvsp: ENST00000405547.3:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3689G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.984C>T
  hgvsp: ENST00000310397.8:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.321C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.73C>T
  hgvsp: ENST00000401644.2:c.73C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.984C>T
  hgvsp: ENST00000342631.6:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 26295
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14001
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16950
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His328His
num of homozygotes: 6
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

2-241976710-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976710
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976710
    reference: chr 2
allele count: 15
allele frequency: 1.653949631720549e-4
allele num: 90692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.74G>A
  hgvsp: ENSP00000384789.2:p.Gly26Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.985G>A
  hgvsp: ENSP00000342992.6:p.Gly329Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.985G>A
  hgvsp: ENSP00000384871.1:p.Gly329Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.985G>A
  hgvsp: ENSP00000386007.3:p.Gly329Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3690C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.322G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.985G>A
  hgvsp: ENSP00000308893.8:p.Gly329Ser
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7435
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26066
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly329Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS

2-241976711-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976711
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976711
    reference: chr 2
allele count: 2
allele frequency: 2.203371157871544e-5
allele num: 90770
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.986G>C
  hgvsp: ENSP00000308893.8:p.Gly329Ala
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.323G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3691C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.75G>C
  hgvsp: ENSP00000384789.2:p.Gly26Ala
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.986G>C
  hgvsp: ENSP00000386007.3:p.Gly329Ala
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.986G>C
  hgvsp: ENSP00000342992.6:p.Gly329Ala
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.986G>C
  hgvsp: ENSP00000384871.1:p.Gly329Ala
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly329Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-241976726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976726
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976726
    reference: chr 2
allele count: 8
allele frequency: 8.96358543417367e-5
allele num: 89250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.90G>A
  hgvsp: ENSP00000384789.2:p.Arg31His
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1001G>A
  hgvsp: ENSP00000308893.8:p.Arg334His
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1001G>A
  hgvsp: ENSP00000384871.1:p.Arg334His
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1001G>A
  hgvsp: ENSP00000342992.6:p.Arg334His
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.338G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3706C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1001G>A
  hgvsp: ENSP00000386007.3:p.Arg334His
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23421
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7295
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26385
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg334His
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

2-241976737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976737
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976737
    reference: chr 2
allele count: 1
allele frequency: 1.149451711533599e-5
allele num: 86998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1012C>T
  hgvsp: ENSP00000386007.3:p.Pro338Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1012C>T
  hgvsp: ENSP00000342992.6:p.Pro338Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1012C>T
  hgvsp: ENSP00000308893.8:p.Pro338Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1012C>T
  hgvsp: ENSP00000384871.1:p.Pro338Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.349C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.101C>T
  hgvsp: ENSP00000384789.2:p.Pro35Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3717G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro338Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

2-241976738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976738
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976738
    reference: chr 2
allele count: 3
allele frequency: 3.471257983893363e-5
allele num: 86424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1013C>T
  hgvsp: ENSP00000384871.1:p.Pro338Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.102C>T
  hgvsp: ENSP00000384789.2:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.350C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1013C>T
  hgvsp: ENSP00000386007.3:p.Pro338Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3718G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1013C>T
  hgvsp: ENSP00000308893.8:p.Pro338Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1013C>T
  hgvsp: ENSP00000342992.6:p.Pro338Leu
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6772
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro338Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

2-241976739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976739
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976739
    reference: chr 2
allele count: 461
allele frequency: 5.370456663560112e-3
allele num: 85840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.351G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1014G>A
  hgvsp: ENST00000310397.8:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1014G>A
  hgvsp: ENST00000401884.1:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1014G>A
  hgvsp: ENST00000405547.3:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1014G>A
  hgvsp: ENST00000342631.6:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.103G>A
  hgvsp: ENST00000401644.2:c.103G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3719C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 1.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 15934
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 2.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11508
  bin: 1.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19003
  bin: 2.25e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 21448
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro338Pro
num of homozygotes: 2
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

2-241976755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976755
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976755
    reference: chr 2
allele count: 2
allele frequency: 2.482067065452108e-5
allele num: 80578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.3C>T
  hgvsp: ENSP00000401865.1:p.Pro2Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1030C>T
  hgvsp: ENSP00000308893.8:p.Pro344Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.119C>T
  hgvsp: ENSP00000384789.2:p.Pro41Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1030C>T
  hgvsp: ENSP00000342992.6:p.Pro344Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3735G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1030C>T
  hgvsp: ENSP00000384871.1:p.Pro344Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1030C>T
  hgvsp: ENSP00000386007.3:p.Pro344Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.367C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13268
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15973
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro344Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

2-241976756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976756
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976756
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 80184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.368C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1031C>T
  hgvsp: ENSP00000308893.8:p.Pro344Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3736G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.4C>T
  hgvsp: ENSP00000401865.1:p.Pro2Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.120C>T
  hgvsp: ENSP00000384789.2:p.Pro41Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1031C>T
  hgvsp: ENSP00000342992.6:p.Pro344Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1031C>T
  hgvsp: ENSP00000384871.1:p.Pro344Leu
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1031C>T
  hgvsp: ENSP00000386007.3:p.Pro344Leu
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16220
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Pro344Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-241976759-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976759
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976759
    reference: chr 2
allele count: 1
allele frequency: 1.264862130027827e-5
allele num: 79060
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1034C>A
  hgvsp: ENSP00000308893.8:p.Thr345Asn
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1034C>A
  hgvsp: ENSP00000386007.3:p.Thr345Asn
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.7C>A
  hgvsp: ENSP00000401865.1:p.Thr3Asn
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.371C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.123C>A
  hgvsp: ENSP00000384789.2:p.Thr42Asn
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1034C>A
  hgvsp: ENSP00000342992.6:p.Thr345Asn
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3739G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1034C>A
  hgvsp: ENSP00000384871.1:p.Thr345Asn
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr345Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-241976760-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976760
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976760
    reference: chr 2
allele count: 2
allele frequency: 2.544140843637104e-5
allele num: 78612
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3740G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1035C>G
  hgvsp: ENST00000405547.3:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.8C>G
  hgvsp: ENST00000431690.1:c.8C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.124C>G
  hgvsp: ENST00000401644.2:c.124C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1035C>G
  hgvsp: ENST00000401884.1:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1035C>G
  hgvsp: ENST00000342631.6:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.372C>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1035C>G
  hgvsp: ENST00000310397.8:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11350
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr345Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

2-241976785-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976785
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976785
    reference: chr 2
allele count: 1
allele frequency: 1.772044230223986e-5
allele num: 56432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+15C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+15C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+15C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3765G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+15C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+15C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+15C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+15C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum

2-241976786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976786
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976786
    reference: chr 2
allele count: 126
allele frequency: 2.716102608320759e-3
allele num: 46390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+16C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+16C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+16C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3766G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+16C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+16C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+16C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+16C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15508
  bin: 1.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21443
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 12658
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13813
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

2-241976787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976787
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976787
    reference: chr 2
allele count: 2
allele frequency: 4.312017593031779e-5
allele num: 46382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+17G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+17G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3767C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+17G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+17G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+17G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+17G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+17G>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15286
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21729
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23593
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

2-241976796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976796
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976796
    reference: chr 2
allele count: 415
allele frequency: 9.665548723681758e-3
allele num: 42936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3776C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22709
  bin: 7.5e0
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13368
  bin: 1.25e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 15711
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23629
  bin: 2.25e1
  variant carriers: 14
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

2-241976796-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976796
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976796
    reference: chr 2
allele count: 1
allele frequency: 2.32904788522452e-5
allele num: 42936
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+26G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+26G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+26G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+26G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3776C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+26G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+26G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+26G>C
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15711
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/2-241976801-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976801
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976801
    reference: chr 2
allele count: 2
allele frequency: 5.216211986855146e-5
allele num: 38342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+31C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3781G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+31C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+31C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+31C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+31C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+31C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+31C>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11320
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3338
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4794
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-241976801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976801
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976801
    reference: chr 2
allele count: 1
allele frequency: 2.608105993427573e-5
allele num: 38342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3781G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+31C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+31C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4794
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

2-241976804-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976804
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976804
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 35668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+34G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+34G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+34G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+34G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3784C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+34G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+34G>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+34G>C
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23978
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18075
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

2-241976811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976811
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976811
    reference: chr 2
allele count: 3
allele frequency: 9.574264377353674e-5
allele num: 31334
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3791C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+41G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+41G>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25374
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8217
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17348
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7052
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12687
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

2-241976815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976815
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976815
    reference: chr 2
allele count: 1
allele frequency: 3.406922867266285e-5
allele num: 29352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+45G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+45G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+45G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+45G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3795C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+45G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+45G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+45G>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7805
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/2-241976820-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976820
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976820
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 28754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+50C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+50C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+50C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3800G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+50C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+50C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+50C>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+50C>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17588
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9671
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3360
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

2-241976820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241976820
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241976820
    reference: chr 2
allele count: 4
allele frequency: 1.391110801975377e-4
allele num: 28754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.134+50C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.382+50C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-3800G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1045+50C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1045+50C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.18+50C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1045+50C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1045+50C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9671
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

2-241979449-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979449
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979449
    reference: chr 2
allele count: 6
allele frequency: 2.562131693569049e-4
allele num: 23418
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1046-43A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1046-43A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.135-43A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.383-43A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1046-43A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6429T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.19-43A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1046-43A>G
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33328
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25175
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-241979458-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979458
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979458
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 23642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1046-34A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.19-34A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6438T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1046-34A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.383-34A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1046-34A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1046-34A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.135-34A>C
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13931
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-241979463-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979463
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979463
    reference: chr 2
allele count: 2
allele frequency: 8.330556481172943e-5
allele num: 24008
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6443T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1046-29A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1046-29A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.19-29A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1046-29A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.383-29A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.135-29A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1046-29A>G
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-241979466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979466
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979466
    reference: chr 2
allele count: 5
allele frequency: 2.064750578130162e-4
allele num: 24216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6446C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1046-26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.19-26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1046-26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.135-26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1046-26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.383-26G>A
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1046-26G>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28544
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18032
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3514
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14658
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25258
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-241979485-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979485
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979485
    reference: chr 2
allele count: 1
allele frequency: 3.612716763005781e-5
allele num: 27680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.383-7A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1046-7A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1046-7A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1046-7A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6465T>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.19-7A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.135-7A>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1046-7A>C
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16838
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15944
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 9.75e1
  variant carriers: 1
hgvs: c.1046-7A>C
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

2-241979486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979486
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979486
    reference: chr 2
allele count: 1
allele frequency: 3.570408454727221e-5
allele num: 28008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1046-6C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1046-6C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.135-6C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1046-6C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6466G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.19-6C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1046-6C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.383-6C>T
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15414
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26961
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1046-6C>T
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

2-241979496-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979496
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979496
    reference: chr 2
allele count: 1
allele frequency: 3.156167150612296e-5
allele num: 31684
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6476T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1050A>G
  hgvsp: ENST00000342631.6:c.1050A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1050A>G
  hgvsp: ENST00000310397.8:c.1050A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1050A>G
  hgvsp: ENST00000405547.3:c.1050A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1050A>G
  hgvsp: ENST00000401884.1:c.1050A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.387A>G
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.139A>G
  hgvsp: ENST00000401644.2:c.139A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.23A>G
  hgvsp: ENST00000431690.1:c.23A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln350Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

2-241979500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979500
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979500
    reference: chr 2
allele count: 6
allele frequency: 1.802451333813987e-4
allele num: 33288
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1054C>T
  hgvsp: ENSP00000308893.8:p.Pro352Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.143C>T
  hgvsp: ENSP00000384789.2:p.Pro49Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.27C>T
  hgvsp: ENSP00000401865.1:p.Pro10Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1054C>T
  hgvsp: ENSP00000342992.6:p.Pro352Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1054C>T
  hgvsp: ENSP00000384871.1:p.Pro352Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1054C>T
  hgvsp: ENSP00000386007.3:p.Pro352Ser
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.391C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6480G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33756
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6454
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro352Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

2-241979532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979532
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979532
    reference: chr 2
allele count: 2
allele frequency: 3.873866893933525e-5
allele num: 51628
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1086C>T
  hgvsp: ENST00000310397.8:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1086C>T
  hgvsp: ENST00000342631.6:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.175C>T
  hgvsp: ENST00000401644.2:c.175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.423C>T
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1086C>T
  hgvsp: ENST00000401884.1:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.59C>T
  hgvsp: ENST00000431690.1:c.59C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6512G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1086C>T
  hgvsp: ENST00000405547.3:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31055
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11427
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly362Gly
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

2-241979550-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979550
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979550
    reference: chr 2
allele count: 43151
allele frequency: 5.076468788969671e-1
allele num: 85002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1104T>C
  hgvsp: ENST00000405547.3:c.1104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.77T>C
  hgvsp: ENST00000431690.1:c.77T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1104T>C
  hgvsp: ENST00000310397.8:c.1104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6530A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.441T>C
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1104T>C
  hgvsp: ENST00000401884.1:c.1104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.193T>C
  hgvsp: ENST00000401644.2:c.193T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1104T>C
  hgvsp: ENST00000342631.6:c.1104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000394324
  ensembl transcript: ENST00000420591
  gene symbol: SNED1
  hgvsc: ENST00000420591.1:c.18T>C
  hgvsp: ENST00000420591.1:c.18T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 2.75e1
  variant carriers: 2056
genotype depth: GenotypeDepth
  all individuals: 12533
  bin: 1.25e1
  variant carriers: 10033
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 418
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 6.25e1
  variant carriers: 454
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 510
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 996
genotype depth: GenotypeDepth
  all individuals: 14681
  bin: 7.5e0
  variant carriers: 4608
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 2.5e0
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 602
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.25e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 479
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 671
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 1.75e1
  variant carriers: 8584
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 456
genotype depth: GenotypeDepth
  all individuals: 8987
  bin: 2.25e1
  variant carriers: 4499
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 9.75e1
  variant carriers: 1998
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 403
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 496
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 1396
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.75e1
  variant carriers: 762
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 7.5e0
  variant carriers: 318
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 2.75e1
  variant carriers: 710
hgvs: p.Asn368Asn
num of homozygotes: 9783
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ

2-241979557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 241979557
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 241979557
    reference: chr 2
allele count: 1
allele frequency: 1.412628902387343e-5
allele num: 70790
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000308893
  ensembl transcript: ENST00000310397
  gene symbol: SNED1
  hgvsc: ENST00000310397.8:c.1111G>A
  hgvsp: ENSP00000308893.8:p.Ala371Thr
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000225521
  ensembl transcript: ENST00000458377
  gene symbol: AC005237.4
  hgvsc: ENST00000458377.1:n.38-6537C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384871
  ensembl transcript: ENST00000401884
  gene symbol: SNED1
  hgvsc: ENST00000401884.1:c.1111G>A
  hgvsp: ENSP00000384871.1:p.Ala371Thr
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000401865
  ensembl transcript: ENST00000431690
  gene symbol: SNED1
  hgvsc: ENST00000431690.1:c.84G>A
  hgvsp: ENSP00000401865.1:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000386007
  ensembl transcript: ENST00000405547
  gene symbol: SNED1
  hgvsc: ENST00000405547.3:c.1111G>A
  hgvsp: ENSP00000386007.3:p.Ala371Thr
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000384789
  ensembl transcript: ENST00000401644
  gene symbol: SNED1
  hgvsc: ENST00000401644.2:c.200G>A
  hgvsp: ENSP00000384789.2:p.Ala68Thr
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000342992
  ensembl transcript: ENST00000342631
  gene symbol: SNED1
  hgvsc: ENST00000342631.6:c.1111G>A
  hgvsp: ENSP00000342992.6:p.Ala371Thr
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162804
  ensembl protein: ENSP00000394324
  ensembl transcript: ENST00000420591
  gene symbol: SNED1
  hgvsc: ENST00000420591.1:c.25G>A
  hgvsp: ENSP00000394324.1:p.Ala9Thr
  variant of: http://identifiers.org/hgnc/24696
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162804
  ensembl transcript: ENST00000493358
  gene symbol: SNED1
  hgvsc: ENST00000493358.1:n.448G>A
  variant of: http://identifiers.org/hgnc/24696
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala371Thr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 6978
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.883925373620291e-5
allele num: 61426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

FS
type: SiteQuality
SIO_000300: 5.26e-1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.747e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.464719e6

VQSLOD
type: SiteQuality
SIO_000300: 8.47e-1

GenotypeQuality
all individuals: 211
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1679
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4547
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.484077764615706e-5
allele num: 57404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.967709885742673e-4
allele num: 8052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 1.290528e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e-1

QD
type: SiteQuality
SIO_000300: 1.299e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 168
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 426
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.431830526887561e-5
allele num: 55230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

DP
type: SiteQuality
SIO_000300: 1.192475e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.356e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

FS
type: SiteQuality
SIO_000300: 5.107e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 3388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 4.25e1
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GenotypeQuality
all individuals: 1246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2337
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.87209824771604e-5
allele num: 53416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.890848952590959e-5
allele num: 14512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8874
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

FS
type: SiteQuality
SIO_000300: 1.073e0

DP
type: SiteQuality
SIO_000300: 1.116667e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

QD
type: SiteQuality
SIO_000300: 1.402e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
all individuals: 198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.361655773420479e-4
allele num: 7344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14306
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.333e0

FS
type: SiteQuality
SIO_000300: 3.388e0

VQSLOD
type: SiteQuality
SIO_000300: -1.015e0

MQ
type: SiteQuality
SIO_000300: 5.496e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

DP
type: SiteQuality
SIO_000300: 1.056459e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

GenotypeQuality
all individuals: 22443
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2499
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variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.63e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.413e0

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.054147e6

QD
type: SiteQuality
SIO_000300: 1.035e1

GenotypeQuality
all individuals: 3596
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.604106512672441e-4
allele num: 6234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43952
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 8.24178e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 6.49e0

GenotypeQuality
all individuals: 3778
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 8.347245409015025e-4
allele num: 5990
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.775895263765884e-4
allele num: 5194
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.522301720200944e-4
allele num: 13138
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.456e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.88799e5

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

GenotypeQuality
all individuals: 716
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3118
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.464285714285714e-4
allele num: 4480
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

QD
type: SiteQuality
SIO_000300: 1.056e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

DP
type: SiteQuality
SIO_000300: 7.11713e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.467e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: -1.983e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
all individuals: 4048
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
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GenotypeQuality
all individuals: 1625
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6312
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.649848958609359e-5
allele num: 37738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.341681574239714e-3
allele num: 4472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3120
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.366e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.021e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 1.701e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.08908e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

GenotypeQuality
all individuals: 6453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4594
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4472
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.984669434685404e-5
allele num: 12524
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.07232e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
all individuals: 5204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
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GenotypeQuality
all individuals: 990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
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GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 445
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variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12268
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.960396039603961e-4
allele num: 5050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

DP
type: SiteQuality
SIO_000300: 6.75085e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.304e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 145
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GenotypeQuality
all individuals: 185
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variant carriers: 1

GenotypeQuality
all individuals: 230
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4926
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.151287903488751e-5
allele num: 12268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5050
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

DP
type: SiteQuality
SIO_000300: 6.75085e5

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

QD
type: SiteQuality
SIO_000300: 1.304e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4025
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GenotypeQuality
all individuals: 5339
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.819417920708884e-5
allele num: 26182
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.807991321641656e-4
allele num: 11062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

MQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

DP
type: SiteQuality
SIO_000300: 5.88444e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.684e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6087
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5998
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 522
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.925669170036588e-4
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.76503e5

FS
type: SiteQuality
SIO_000300: 1.463e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 1.528e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.29e-2

GenotypeQuality
all individuals: 7660
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6934
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 1.376e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

VQSLOD
type: SiteQuality
SIO_000300: -2.053e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 4.79011e5

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24325
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.04e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.757e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.89198e5

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1684
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.296e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.27e-2

MQ
type: SiteQuality
SIO_000300: 5.516e1

DP
type: SiteQuality
SIO_000300: 5.44849e5

QD
type: SiteQuality
SIO_000300: 1.206e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 3046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20638
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 5.51339e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.391e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.169e0

GenotypeQuality
all individuals: 535
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10928
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 815
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 3.726708074534161e-3
allele num: 3220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.062e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.661e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 6.84216e5

QD
type: SiteQuality
SIO_000300: 1.816e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

GenotypeQuality
all individuals: 1393
bin: 2.75e1
variant carriers: 478

GenotypeQuality
all individuals: 2515
bin: 1.75e1
variant carriers: 1082

GenotypeQuality
all individuals: 497
bin: 4.25e1
variant carriers: 398

GenotypeQuality
all individuals: 10928
bin: 9.75e1
variant carriers: 10473

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 65

GenotypeQuality
all individuals: 705
bin: 6.75e1
variant carriers: 123

GenotypeQuality
all individuals: 1516
bin: 8.25e1
variant carriers: 1398

Latino
type: Population
allele count: 454
allele frequency: 3.439393939393939e-1
allele num: 1320
num of homozygotes: 45

African
type: Population
allele count: 835
allele frequency: 2.593167701863354e-1
allele num: 3220
num of homozygotes: 92

South Asian
type: Population
allele count: 2025
allele frequency: 2.418776875298614e-1
allele num: 8372
num of homozygotes: 231

European (Non-Finnish)
type: Population
allele count: 9004
allele frequency: 4.428922774225283e-1
allele num: 20330
num of homozygotes: 1447

Other
type: Population
allele count: 113
allele frequency: 3.284883720930232e-1
allele num: 344
num of homozygotes: 17

European (Finnish)
type: Population
allele count: 841
allele frequency: 3.480960264900662e-1
allele num: 2416
num of homozygotes: 110

East Asian
type: Population
allele count: 191
allele frequency: 1.460244648318043e-1
allele num: 1308
num of homozygotes: 5

QD
type: SiteQuality
SIO_000300: 1.816e1

FS
type: SiteQuality
SIO_000300: 1.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.661e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.84216e5

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4505
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.636978579481398e-4
allele num: 1774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.44628e5

QD
type: SiteQuality
SIO_000300: 7.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.36e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.302e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

GenotypeQuality
all individuals: 407
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1879
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.62695e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

QD
type: SiteQuality
SIO_000300: 7.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

GenotypeQuality
all individuals: 252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 2.576212966938601e-4
allele num: 23290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8690
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.523e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

DP
type: SiteQuality
SIO_000300: 6.79896e5

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

QD
type: SiteQuality
SIO_000300: 1.673e1

GenotypeQuality
all individuals: 3615
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6863
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.271186440677966e-4
allele num: 23600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2692
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
type: SiteQuality
SIO_000300: 1.1169e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.41e1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.008e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

DP
type: SiteQuality
SIO_000300: 6.87553e5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.246062505153789e-5
allele num: 24254
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.710027100271003e-4
allele num: 3690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.01319e5

VQSLOD
type: SiteQuality
SIO_000300: -1.637e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

QD
type: SiteQuality
SIO_000300: 1.474e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

FS
type: SiteQuality
SIO_000300: 7.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.064049418840933e-5
allele num: 24606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2786
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.23463687150838e-4
allele num: 8950
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.202913631633715e-4
allele num: 1922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 7.11024e5

QD
type: SiteQuality
SIO_000300: 1.143e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.789272030651341e-4
allele num: 2088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25438
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.25004e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 3.424e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 5.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.430724355858046e-4
allele num: 4114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27306
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.58231e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.381e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.672e0

QD
type: SiteQuality
SIO_000300: 4.83e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 463
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GenotypeQuality
all individuals: 893
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.576282097131822e-5
allele num: 27962
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.114e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

FS
type: SiteQuality
SIO_000300: 7.829e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

DP
type: SiteQuality
SIO_000300: 7.69247e5

QD
type: SiteQuality
SIO_000300: 8.34e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 307
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GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.025851456709069e-4
allele num: 29244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.361e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.106e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 7.92431e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3332
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.018978396931153e-4
allele num: 9906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.36835e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.595919214994029e-5
allele num: 38522
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.945525291828794e-3
allele num: 514
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.503e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 9.42128e5

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.554017469479491e-5
allele num: 39154
num of homozygotes: 0

South Asian
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allele frequency: 9.342301943198804e-5
allele num: 10704
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East Asian
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allele count: 0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

QD
type: SiteQuality
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DP
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 573
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 8.887308922858158e-5
allele num: 11252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 2.172e0

DP
type: SiteQuality
SIO_000300: 1.018788e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 543
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.872659176029963e-4
allele num: 5340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 2.172e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.018788e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 1399
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.389261744966443e-5
allele num: 11920
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.088449e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.164e0

VQSLOD
type: SiteQuality
SIO_000300: -1.763e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

QD
type: SiteQuality
SIO_000300: 6.98e0

GenotypeQuality
all individuals: 568
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1039
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variant carriers: 0

GenotypeQuality
all individuals: 17006
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.120838070488874e-5
allele num: 12314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7112
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

FS
type: SiteQuality
SIO_000300: 2.023e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.229e0

QD
type: SiteQuality
SIO_000300: 9.67e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.47e-1

DP
type: SiteQuality
SIO_000300: 1.115957e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 1456
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 622
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variant carriers: 3

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 304
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2601
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1431
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 604
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variant carriers: 3

GenotypeQuality
all individuals: 1016
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 8
allele frequency: 6.426735218508997e-4
allele num: 12448
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 8.584743684081432e-4
allele num: 8154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.092050209205021e-4
allele num: 4780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.963633507442171e-5
allele num: 50926
num of homozygotes: 0

African
type: Population
allele count: 166
allele frequency: 2.290919127794645e-2
allele num: 7246
num of homozygotes: 6

Other
type: Population
allele count: 2
allele frequency: 2.994011976047904e-3
allele num: 668
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.263e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.128534e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.034709946970914e-5
allele num: 12446
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.501501501501501e-3
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.358583277644562e-4
allele num: 50878
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.520218911523259e-4
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 1.123248e6

QD
type: SiteQuality
SIO_000300: 1.196e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 618
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 492
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.929890749037177e-5
allele num: 50892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12476
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 1.128855e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.025e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.617e0

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 9.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

GenotypeQuality
all individuals: 1590
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 317
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.40805406927626e-4
allele num: 7102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8000
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.01667468334135e-5
allele num: 49896
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.628201172477631e-4
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

DP
type: SiteQuality
SIO_000300: 1.091249e6

QD
type: SiteQuality
SIO_000300: 1.356e1

GenotypeQuality
all individuals: 662
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 418
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.056851371919865e-5
allele num: 48618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.199e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

FS
type: SiteQuality
SIO_000300: 5.097e0

DP
type: SiteQuality
SIO_000300: 1.046197e6

MQRankSum
type: SiteQuality
SIO_000300: -1.465e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 9.58e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 23573
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 943
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GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.300390117035111e-4
allele num: 7690
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.45602795573675e-4
allele num: 6868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48308
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.169934640522875e-5
allele num: 12240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.34e0

FS
type: SiteQuality
SIO_000300: 2.453e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQ
type: SiteQuality
SIO_000300: 5.777e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: -4.874e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.041265e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e-1

GenotypeQuality
all individuals: 1021
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 941
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1628
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23762
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2210
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1135
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 674
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 9.75e1
variant carriers: 446

GenotypeQuality
all individuals: 1170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.75e1
variant carriers: 2

Latino
type: Population
allele count: 12
allele frequency: 1.577287066246057e-3
allele num: 7608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.125e-3
allele num: 640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 403
allele frequency: 8.398282832492811e-3
allele num: 47986
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 15
allele frequency: 3.373819163292848e-3
allele num: 4446
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.639613051319888e-3
allele num: 12198
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.316174319976601e-3
allele num: 6838
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.972e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

QD
type: SiteQuality
SIO_000300: 1.259e1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

DP
type: SiteQuality
SIO_000300: 1.028421e6

GenotypeQuality
all individuals: 453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29518
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.46548182548897e-5
allele num: 44788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.377e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 9.35222e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

FS
type: SiteQuality
SIO_000300: 1.1788e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2724
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16299
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11804
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.659e0

DP
type: SiteQuality
SIO_000300: 9.29358e5

FS
type: SiteQuality
SIO_000300: 7.656e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.939e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 2.306e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 30941
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2182
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.694915254237288e-3
allele num: 590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1242e1

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.685e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.131e0

DP
type: SiteQuality
SIO_000300: 9.11824e5

QD
type: SiteQuality
SIO_000300: 1.156e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

GenotypeQuality
all individuals: 1838
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.988643156007172e-4
allele num: 6692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

QD
type: SiteQuality
SIO_000300: 1.539e1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

FS
type: SiteQuality
SIO_000300: 1.329e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.05555e5

GenotypeQuality
all individuals: 11435
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28701
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4890
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.396931927133269e-4
allele num: 4172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30388
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.964e0

VQSLOD
type: SiteQuality
SIO_000300: 2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e0

QD
type: SiteQuality
SIO_000300: 1.032e1

MQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

DP
type: SiteQuality
SIO_000300: 6.78178e5

FS
type: SiteQuality
SIO_000300: 3.233e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

GenotypeQuality
all individuals: 5104
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22875
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 213
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 367
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2565
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3532
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 263
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 415
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 950
bin: 9.75e1
variant carriers: 116

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.659574468085106e-3
allele num: 376
num of homozygotes: 0

African
type: Population
allele count: 116
allele frequency: 2.862783810463969e-2
allele num: 4052
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 1.71939477303989e-3
allele num: 2908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.640689089417555e-4
allele num: 24380
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 6.32428e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.75e-2

QD
type: SiteQuality
SIO_000300: 1.379e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e0

GenotypeQuality
all individuals: 2257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4538
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2542
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13971
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.089310542242578e-5
allele num: 24454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2478
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.517623363544814e-4
allele num: 3972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.664e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.88e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.079e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 6.27607e5

QD
type: SiteQuality
SIO_000300: 2.818e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2366
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 39

GenotypeQuality
all individuals: 3707
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 48

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 2554
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 701
bin: 6.75e1
variant carriers: 18

GenotypeQuality
all individuals: 265
bin: 7.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1273
bin: 9.75e1
variant carriers: 456

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 14

Latino
type: Population
allele count: 12
allele frequency: 4.889975550122249e-3
allele num: 2454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 4.833040421792618e-3
allele num: 2276
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.873563218390805e-3
allele num: 348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2508
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 5.487269534679543e-3
allele num: 9112
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.3319126265317e-3
allele num: 3754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 336
allele frequency: 1.49439601494396e-2
allele num: 22484
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.82e-2

QD
type: SiteQuality
SIO_000300: 1.418e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 5.92167e5

VQSLOD
type: SiteQuality
SIO_000300: 5.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23629
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.663825253063399e-4
allele num: 3754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22484
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.92167e5

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.82e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.83e0

QD
type: SiteQuality
SIO_000300: 1.418e1

GenotypeQuality
all individuals: 2215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 200
bin: 8.25e1
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GenotypeQuality
all individuals: 833
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.025641025641026e-3
allele num: 1950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.415e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.85e-2

DP
type: SiteQuality
SIO_000300: 5.59201e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

VQSLOD
type: SiteQuality
SIO_000300: -1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.133016088828461e-4
allele num: 8826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.85e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.47e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

DP
type: SiteQuality
SIO_000300: 5.59201e5

GenotypeQuality
all individuals: 2258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17984
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.55e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

DP
type: SiteQuality
SIO_000300: 5.41638e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.5e0

VQSLOD
type: SiteQuality
SIO_000300: -3.062e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 200
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GenotypeQuality
all individuals: 218
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2928
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.54320987654321e-3
allele num: 1296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.475845097785262e-5
allele num: 15442
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.14877e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.89e-2

FS
type: SiteQuality
SIO_000300: 5.546e0

QD
type: SiteQuality
SIO_000300: 1.575e1

GenotypeQuality
all individuals: 591
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 406
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GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14324
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.599712023038157e-4
allele num: 2778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

MQRankSum
type: SiteQuality
SIO_000300: -2.025e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

DP
type: SiteQuality
SIO_000300: 5.08437e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.193e0

GenotypeQuality
all individuals: 397
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.049e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.43e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

VQSLOD
type: SiteQuality
SIO_000300: -3.716e-1

DP
type: SiteQuality
SIO_000300: 5.08161e5

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 121
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.276437847866419e-4
allele num: 1078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1394
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.846153846153846e-3
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.583979328165374e-4
allele num: 7740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2778
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.08161e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.049e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.43e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.716e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1111
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GenotypeQuality
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GenotypeQuality
all individuals: 447
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GenotypeQuality
all individuals: 6059
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GenotypeQuality
all individuals: 1659
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GenotypeQuality
all individuals: 380
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1878
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 2.465078060805259e-3
allele num: 2434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.871e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.42e-2

QD
type: SiteQuality
SIO_000300: 1.216e1

DP
type: SiteQuality
SIO_000300: 4.57053e5

VQSLOD
type: SiteQuality
SIO_000300: 2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-1

FS
type: SiteQuality
SIO_000300: 1.912e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 527
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GenotypeQuality
all individuals: 153
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.933e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

QD
type: SiteQuality
SIO_000300: 5.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.219e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 4.80699e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
all individuals: 1741
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.907668828691339e-4
allele num: 10484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.246e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

QD
type: SiteQuality
SIO_000300: 1.059e1

FS
type: SiteQuality
SIO_000300: 2.59e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.83e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 5.01714e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.752e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.515506906437321e-4
allele num: 7674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1934
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 5.20141e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.61e-2

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 1432
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 2.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.932730445819452e-5
allele num: 12606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2096
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.078e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.97e-2

DP
type: SiteQuality
SIO_000300: 6.14046e5

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

GenotypeQuality
all individuals: 553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 86
bin: 4.25e1
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GenotypeQuality
all individuals: 1689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1438
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12824
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.2465719272002e-4
allele num: 8022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.1988e5

FS
type: SiteQuality
SIO_000300: 3.757e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.408e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.88e-2

QD
type: SiteQuality
SIO_000300: 1.242e1

GenotypeQuality
all individuals: 682
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 76
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10712
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15084
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.211303789338471e-4
allele num: 3114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1064
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.785e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

FS
type: SiteQuality
SIO_000300: 1.642e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

QD
type: SiteQuality
SIO_000300: 1.168e1

MQ
type: SiteQuality
SIO_000300: 5.885e1

DP
type: SiteQuality
SIO_000300: 6.6834e5

GenotypeQuality
all individuals: 2013
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 320
bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 9.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.734594796464584e-4
allele num: 16066
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

FS
type: SiteQuality
SIO_000300: 1.144e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 6.86462e5

GenotypeQuality
all individuals: 541
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1861
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GenotypeQuality
all individuals: 309
bin: 5.75e1
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GenotypeQuality
all individuals: 877
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variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.25e1
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GenotypeQuality
all individuals: 1749
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3072
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.139952921035737e-4
allele num: 9346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

DP
type: SiteQuality
SIO_000300: 8.34643e5

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

FS
type: SiteQuality
SIO_000300: 4.263e0

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
all individuals: 1819
bin: 3.25e1
variant carriers: 1332

GenotypeQuality
all individuals: 1470
bin: 4.75e1
variant carriers: 1316

GenotypeQuality
all individuals: 669
bin: 7.25e1
variant carriers: 438

GenotypeQuality
all individuals: 1352
bin: 5.25e1
variant carriers: 1139

GenotypeQuality
all individuals: 2199
bin: 2.5e0
variant carriers: 208

GenotypeQuality
all individuals: 1033
bin: 1.75e1
variant carriers: 695

GenotypeQuality
all individuals: 10744
bin: 2.25e1
variant carriers: 1023

GenotypeQuality
all individuals: 606
bin: 1.25e1
variant carriers: 352

GenotypeQuality
all individuals: 786
bin: 9.25e1
variant carriers: 726

GenotypeQuality
all individuals: 856
bin: 4.25e1
variant carriers: 743

GenotypeQuality
all individuals: 1311
bin: 6.75e1
variant carriers: 712

GenotypeQuality
all individuals: 5368
bin: 6.25e1
variant carriers: 864

GenotypeQuality
all individuals: 24542
bin: 9.75e1
variant carriers: 24148

GenotypeQuality
all individuals: 799
bin: 5.75e1
variant carriers: 678

GenotypeQuality
all individuals: 890
bin: 7.75e1
variant carriers: 669

GenotypeQuality
all individuals: 848
bin: 8.25e1
variant carriers: 674

European (Finnish)
type: Population
allele count: 2349
allele frequency: 4.978804578211106e-1
allele num: 4718
num of homozygotes: 492

European (Non-Finnish)
type: Population
allele count: 25910
allele frequency: 5.337645750072102e-1
allele num: 48542
num of homozygotes: 6028

Latino
type: Population
allele count: 2068
allele frequency: 3.514615907545887e-1
allele num: 5884
num of homozygotes: 270

East Asian
type: Population
allele count: 2233
allele frequency: 3.924428822495606e-1
allele num: 5690
num of homozygotes: 330

African
type: Population
allele count: 4772
allele frequency: 6.322204557498675e-1
allele num: 7548
num of homozygotes: 1414

Other
type: Population
allele count: 355
allele frequency: 5.411585365853658e-1
allele num: 656
num of homozygotes: 92

South Asian
type: Population
allele count: 5464
allele frequency: 4.567034436643263e-1
allele num: 11964
num of homozygotes: 1157

DP
type: SiteQuality
SIO_000300: 1.373797e6

FS
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.816e1

MQ
type: SiteQuality
SIO_000300: 6.0e1