8-144356849-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356849
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356849
    reference: chr 8
allele count: 3
allele frequency: 1.726519337016575e-4
allele num: 17376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.218G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.125-25G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*901-25G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.81G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.52-25G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.125-25G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.125-25G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.125-25G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.125-25G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.56-25G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.125-41G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

8-144356866-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356866
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356866
    reference: chr 8
allele count: 1
allele frequency: 5.179200331468821e-5
allele num: 19308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.125-8A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.125-8A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.125-8A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.125-8A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.125-8A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.98A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.235A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.125-24A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*901-8A>G
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.56-8A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.52-8A>G
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*901-8A>G
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

8-144356878-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356878
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356878
    reference: chr 8
allele count: 1
allele frequency: 4.755564009891573e-5
allele num: 21028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.129C>T
  hgvsp: ENST00000520021.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.129C>T
  hgvsp: ENST00000340042.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.129C>T
  hgvsp: ENST00000344692.3:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.60C>T
  hgvsp: ENST00000517530.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.129C>T
  hgvsp: ENST00000521682.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.125-12C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*905C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.56C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.110C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.129C>T
  hgvsp: ENST00000523522.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.247C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser43Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-144356883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356883
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356883
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 21636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.252G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.115G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.134G>A
  hgvsp: ENSP00000345024.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.134G>A
  hgvsp: ENSP00000430987.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.65G>A
  hgvsp: ENSP00000429514.1:p.Gly22Asp
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.134G>A
  hgvsp: ENSP00000427881.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.61G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.134G>A
  hgvsp: ENSP00000430292.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.125-7G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*910G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.134G>A
  hgvsp: ENSP00000344727.3:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22793
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly45Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

8-144356890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356890
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356890
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 22582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.141C>T
  hgvsp: ENST00000344692.3:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.72C>T
  hgvsp: ENST00000517530.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.141C>T
  hgvsp: ENST00000520021.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.125C>T
  hgvsp: ENSP00000429295.1:p.Ala42Val
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.68C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.259C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.141C>T
  hgvsp: ENST00000521682.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.122C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.141C>T
  hgvsp: ENST00000340042.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*917C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.141C>T
  hgvsp: ENST00000523522.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22697
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala42Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

8-144356892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356892
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356892
    reference: chr 8
allele count: 2
allele frequency: 8.728288382648163e-5
allele num: 22914
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.143C>T
  hgvsp: ENSP00000345024.1:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.74C>T
  hgvsp: ENSP00000429514.1:p.Pro25Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.127C>T
  hgvsp: ENST00000517468.1:c.127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.143C>T
  hgvsp: ENSP00000430292.1:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.143C>T
  hgvsp: ENSP00000430987.1:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.143C>T
  hgvsp: ENSP00000427881.1:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.70C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.261C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.143C>T
  hgvsp: ENSP00000344727.3:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.124C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*919C>T
  variant of: http://identifiers.org/hgnc/26786
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24864
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro48Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

8-144356894-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356894
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356894
    reference: chr 8
allele count: 1
allele frequency: 4.315553253927153e-5
allele num: 23172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.145A>T
  hgvsp: ENSP00000427881.1:p.Lys49Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.72A>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.76A>T
  hgvsp: ENSP00000429514.1:p.Lys26Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.145A>T
  hgvsp: ENSP00000344727.3:p.Lys49Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*921A>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.145A>T
  hgvsp: ENSP00000345024.1:p.Lys49Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.263A>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.145A>T
  hgvsp: ENSP00000430987.1:p.Lys49Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.129A>T
  hgvsp: ENST00000517468.1:c.129A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.126A>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.145A>T
  hgvsp: ENSP00000430292.1:p.Lys49Ter
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys49Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

8-144356899-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356899
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356899
    reference: chr 8
allele count: 387
allele frequency: 1.607944158218381e-2
allele num: 24068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.150G>C
  hgvsp: ENST00000523522.1:c.150G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.150G>C
  hgvsp: ENST00000521682.1:c.150G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*926G>C
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.150G>C
  hgvsp: ENST00000344692.3:c.150G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.81G>C
  hgvsp: ENST00000517530.1:c.81G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.134G>C
  hgvsp: ENSP00000429295.1:p.Cys45Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.268G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.131G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.77G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.150G>C
  hgvsp: ENST00000340042.1:c.150G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.150G>C
  hgvsp: ENST00000520021.1:c.150G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 26388
  bin: 7.5e0
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 1.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 20191
  bin: 2.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Cys45Ser
num of homozygotes: 23
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

8-144356906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356906
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356906
    reference: chr 8
allele count: 1
allele frequency: 4.014452027298274e-5
allele num: 24910
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.157C>T
  hgvsp: ENSP00000345024.1:p.Gln53Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*933C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.157C>T
  hgvsp: ENSP00000430987.1:p.Gln53Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.157C>T
  hgvsp: ENSP00000344727.3:p.Gln53Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.157C>T
  hgvsp: ENSP00000427881.1:p.Gln53Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.157C>T
  hgvsp: ENSP00000430292.1:p.Gln53Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.84C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.88C>T
  hgvsp: ENSP00000429514.1:p.Gln30Ter
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.138C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.275C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.141C>T
  hgvsp: ENST00000517468.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln53Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

8-144356911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356911
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356911
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 25644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.162G>A
  hgvsp: ENST00000520021.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*938G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.162G>A
  hgvsp: ENST00000344692.3:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.146G>A
  hgvsp: ENSP00000429295.1:p.Arg49His
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.162G>A
  hgvsp: ENST00000340042.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.143G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.93G>A
  hgvsp: ENST00000517530.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.162G>A
  hgvsp: ENST00000521682.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.162G>A
  hgvsp: ENST00000523522.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.89G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.280G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28126
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg49His
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

8-144356914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356914
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356914
    reference: chr 8
allele count: 1
allele frequency: 3.814464449191333e-5
allele num: 26216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.283C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.146C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*941C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.96C>T
  hgvsp: ENST00000517530.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.165C>T
  hgvsp: ENST00000521682.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.165C>T
  hgvsp: ENST00000520021.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.165C>T
  hgvsp: ENST00000344692.3:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.149C>T
  hgvsp: ENSP00000429295.1:p.Pro50Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.165C>T
  hgvsp: ENST00000340042.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.165C>T
  hgvsp: ENST00000523522.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.92C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28621
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro50Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

8-144356915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356915
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356915
    reference: chr 8
allele count: 12
allele frequency: 4.538921249716317e-4
allele num: 26438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.166G>A
  hgvsp: ENSP00000430292.1:p.Asp56Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.166G>A
  hgvsp: ENSP00000345024.1:p.Asp56Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.97G>A
  hgvsp: ENSP00000429514.1:p.Asp33Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.166G>A
  hgvsp: ENSP00000430987.1:p.Asp56Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.166G>A
  hgvsp: ENSP00000427881.1:p.Asp56Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.150G>A
  hgvsp: ENST00000517468.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.93G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.284G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.166G>A
  hgvsp: ENSP00000344727.3:p.Asp56Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*942G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.147G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28850
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp56Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

8-144356917-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356917
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356917
    reference: chr 8
allele count: 1
allele frequency: 3.746160185809545e-5
allele num: 26694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.168C>G
  hgvsp: ENSP00000430987.1:p.Asp56Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.95C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.99C>G
  hgvsp: ENSP00000429514.1:p.Asp33Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.168C>G
  hgvsp: ENSP00000344727.3:p.Asp56Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.152C>G
  hgvsp: ENSP00000429295.1:p.Thr51Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.149C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.168C>G
  hgvsp: ENSP00000430292.1:p.Asp56Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.168C>G
  hgvsp: ENSP00000345024.1:p.Asp56Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.286C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*944C>G
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.168C>G
  hgvsp: ENSP00000427881.1:p.Asp56Glu
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29031
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp56Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

8-144356924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356924
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356924
    reference: chr 8
allele count: 1
allele frequency: 3.651767455448437e-5
allele num: 27384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.159C>T
  hgvsp: ENST00000517468.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.175C>T
  hgvsp: ENSP00000344727.3:p.Leu59Phe
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.175C>T
  hgvsp: ENSP00000345024.1:p.Leu59Phe
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.175C>T
  hgvsp: ENSP00000430987.1:p.Leu59Phe
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.106C>T
  hgvsp: ENSP00000429514.1:p.Leu36Phe
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*951C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.102C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.293C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.156C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.175C>T
  hgvsp: ENSP00000427881.1:p.Leu59Phe
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.175C>T
  hgvsp: ENSP00000430292.1:p.Leu59Phe
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28972
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu59Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

8-144356927-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356927
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356927
    reference: chr 8
allele count: 1
allele frequency: 3.634513338663953e-5
allele num: 27514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.296C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.178C>G
  hgvsp: ENSP00000430292.1:p.Gln60Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.159C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.162C>G
  hgvsp: ENST00000517468.1:c.162C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*954C>G
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.178C>G
  hgvsp: ENSP00000345024.1:p.Gln60Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.109C>G
  hgvsp: ENSP00000429514.1:p.Gln37Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.105C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.178C>G
  hgvsp: ENSP00000344727.3:p.Gln60Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.178C>G
  hgvsp: ENSP00000430987.1:p.Gln60Glu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.178C>G
  hgvsp: ENSP00000427881.1:p.Gln60Glu
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln60Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

8-144356932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356932
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356932
    reference: chr 8
allele count: 3
allele frequency: 1.08232917237896e-4
allele num: 27718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.301C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.183C>T
  hgvsp: ENST00000523522.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.183C>T
  hgvsp: ENST00000344692.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.183C>T
  hgvsp: ENST00000340042.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.110C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.167C>T
  hgvsp: ENSP00000429295.1:p.Thr56Met
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.114C>T
  hgvsp: ENST00000517530.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*959C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.183C>T
  hgvsp: ENST00000521682.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.183C>T
  hgvsp: ENST00000520021.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.164C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17043
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr56Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

8-144356933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356933
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356933
    reference: chr 8
allele count: 10
allele frequency: 3.614283648980772e-4
allele num: 27668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.168G>A
  hgvsp: ENST00000517468.1:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.184G>A
  hgvsp: ENSP00000430987.1:p.Val62Ile
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.165G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*960G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.184G>A
  hgvsp: ENSP00000345024.1:p.Val62Ile
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.184G>A
  hgvsp: ENSP00000427881.1:p.Val62Ile
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.184G>A
  hgvsp: ENSP00000344727.3:p.Val62Ile
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.184G>A
  hgvsp: ENSP00000430292.1:p.Val62Ile
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.302G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.115G>A
  hgvsp: ENSP00000429514.1:p.Val39Ile
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.111G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28164
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Val62Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

8-144356936-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356936
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356936
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 27742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.187G>C
  hgvsp: ENSP00000427881.1:p.Glu63Gln
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.171G>C
  hgvsp: ENSP00000429295.1:p.Ter57TyrextTer16
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.168G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.114G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.187G>C
  hgvsp: ENSP00000345024.1:p.Glu63Gln
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.187G>C
  hgvsp: ENSP00000430292.1:p.Glu63Gln
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.118G>C
  hgvsp: ENSP00000429514.1:p.Glu40Gln
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.187G>C
  hgvsp: ENSP00000430987.1:p.Glu63Gln
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.187G>C
  hgvsp: ENSP00000344727.3:p.Glu63Gln
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.305G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*963G>C
  variant of: http://identifiers.org/hgnc/26786
canonical: false
consequence: stop lost
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17620
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27621
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter57TyrextTer16
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

8-144356937-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356937
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356936
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 27868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*3delG
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.190delG
  hgvsp: ENSP00000345024.1:p.Glu64LysfsTer41
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.121delG
  hgvsp: ENSP00000429514.1:p.Glu41LysfsTer21
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.171delG
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.190delG
  hgvsp: ENSP00000430987.1:p.Glu64LysfsTer41
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.190delG
  hgvsp: ENSP00000430292.1:p.Glu64LysfsTer15
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.190delG
  hgvsp: ENSP00000427881.1:p.Glu64LysfsTer?
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.190delG
  hgvsp: ENSP00000344727.3:p.Glu64LysfsTer161
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*966delG
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.308delG
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.117delG
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27737
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu64LysfsTer41
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: AG
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

8-144356938-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356938
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356938
    reference: chr 8
allele count: 1
allele frequency: 3.576282097131822e-5
allele num: 27962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.307G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.189G>A
  hgvsp: ENST00000523522.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.189G>A
  hgvsp: ENST00000521682.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.189G>A
  hgvsp: ENST00000344692.3:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.170G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*965G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.116G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.189G>A
  hgvsp: ENST00000340042.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.189G>A
  hgvsp: ENST00000520021.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.120G>A
  hgvsp: ENST00000517530.1:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu63Glu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

8-144356940-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356940
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356940
    reference: chr 8
allele count: 1
allele frequency: 3.567351598173516e-5
allele num: 28032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.172A>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.191A>T
  hgvsp: ENSP00000430987.1:p.Glu64Val
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.122A>T
  hgvsp: ENSP00000429514.1:p.Glu41Val
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.191A>T
  hgvsp: ENSP00000427881.1:p.Glu64Val
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.191A>T
  hgvsp: ENSP00000344727.3:p.Glu64Val
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*967A>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*4A>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.191A>T
  hgvsp: ENSP00000345024.1:p.Glu64Val
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.191A>T
  hgvsp: ENSP00000430292.1:p.Glu64Val
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.309A>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.118A>T
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu64Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

8-144356950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356950
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356950
    reference: chr 8
allele count: 2
allele frequency: 7.250054375407815e-5
allele num: 27586
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*977C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.319C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.201C>T
  hgvsp: ENST00000523522.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.182C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.128C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.201C>T
  hgvsp: ENST00000520021.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.132C>T
  hgvsp: ENST00000517530.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.201C>T
  hgvsp: ENST00000521682.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.201C>T
  hgvsp: ENST00000340042.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.201C>T
  hgvsp: ENST00000344692.3:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile67Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-144356951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356951
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356951
    reference: chr 8
allele count: 6
allele frequency: 2.17470097861544e-4
allele num: 27590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.202G>A
  hgvsp: ENSP00000430292.1:p.Gly68Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.202G>A
  hgvsp: ENSP00000430987.1:p.Gly68Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.202G>A
  hgvsp: ENSP00000427881.1:p.Gly68Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.183G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.320G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.129G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.133G>A
  hgvsp: ENSP00000429514.1:p.Gly45Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.202G>A
  hgvsp: ENSP00000344727.3:p.Gly68Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.202G>A
  hgvsp: ENSP00000345024.1:p.Gly68Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*978G>A
  variant of: http://identifiers.org/hgnc/26786
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25327
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly68Ser
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/8-144356969-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356969
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356969
    reference: chr 8
allele count: 9
allele frequency: 3.455690370142835e-4
allele num: 26044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*33C>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.220C>A
  hgvsp: ENSP00000427881.1:p.Pro74Thr
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.201C>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.338C>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.220C>A
  hgvsp: ENSP00000430292.1:p.Pro74Thr
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.147C>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.220C>A
  hgvsp: ENSP00000344727.3:p.Pro74Thr
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*996C>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.151C>A
  hgvsp: ENSP00000429514.1:p.Pro51Thr
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.220C>A
  hgvsp: ENSP00000430987.1:p.Pro74Thr
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.220C>A
  hgvsp: ENSP00000345024.1:p.Pro74Thr
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19285
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro74Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-144356969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356969
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356969
    reference: chr 8
allele count: 1
allele frequency: 3.839655966825373e-5
allele num: 26044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.220C>T
  hgvsp: ENSP00000344727.3:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.220C>T
  hgvsp: ENSP00000427881.1:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.220C>T
  hgvsp: ENSP00000345024.1:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.220C>T
  hgvsp: ENSP00000430292.1:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.151C>T
  hgvsp: ENSP00000429514.1:p.Pro51Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*996C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.338C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.147C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.220C>T
  hgvsp: ENSP00000430987.1:p.Pro74Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.201C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro74Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

8-144356971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356971
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356971
    reference: chr 8
allele count: 58
allele frequency: 2.244582043343653e-3
allele num: 25840
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.222C>T
  hgvsp: ENST00000340042.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.340C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.222C>T
  hgvsp: ENST00000520021.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.222C>T
  hgvsp: ENST00000521682.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.222C>T
  hgvsp: ENST00000344692.3:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.153C>T
  hgvsp: ENST00000517530.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.149C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.222C>T
  hgvsp: ENST00000523522.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*998C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.203C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 25788
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 18555
  bin: 7.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.222C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

8-144356972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356972
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356972
    reference: chr 8
allele count: 2
allele frequency: 7.777259293824856e-5
allele num: 25716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.223G>A
  hgvsp: ENSP00000344727.3:p.Gly75Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223G>A
  hgvsp: ENSP00000427881.1:p.Asp75Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223G>A
  hgvsp: ENSP00000430987.1:p.Asp75Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223G>A
  hgvsp: ENSP00000430292.1:p.Val75Ile
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223G>A
  hgvsp: ENSP00000345024.1:p.Asp75Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.204G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154G>A
  hgvsp: ENSP00000429514.1:p.Gly52Arg
  variant of: http://identifiers.org/hgnc/4320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18158
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp75Asn
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

8-144356981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356981
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356981
    reference: chr 8
allele count: 1
allele frequency: 4.164931278633903e-5
allele num: 24010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*1G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+9G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+9G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+9G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+9G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.213G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36+9G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+9G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+9G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+9G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223+9G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/8-144356983-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356983
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356983
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 23920
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*3A>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+11A>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+11A>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.215A>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+11A>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36+11A>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+11A>C
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+11A>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+11A>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+11A>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223+11A>C
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12052
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-144356984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356984
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356984
    reference: chr 8
allele count: 281
allele frequency: 1.187558110049869e-2
allele num: 23662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+12G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+12G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*4G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+12G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36+12G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223+12G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+12G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+12G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+12G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.216G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+12G>A
  variant of: http://identifiers.org/hgnc/26786
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 12999
  bin: 7.5e0
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 30424
  bin: 2.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 1.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 3.25e1
  variant carriers: 18
num of homozygotes: 15
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

8-144356988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356988
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356988
    reference: chr 8
allele count: 4
allele frequency: 1.753002015952318e-4
allele num: 22818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.220C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+16C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+16C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223+16C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+16C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+16C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+16C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+16C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*8C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+16C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36+16C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31389
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11819
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

8-144356990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356990
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356990
    reference: chr 8
allele count: 1
allele frequency: 4.538852578068264e-5
allele num: 22032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*10G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+18G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.222G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+18G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+18G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36+18G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223+18G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+18G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+18G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+18G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+18G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10849
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4637
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

8-144356999-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144356999
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144356999
    reference: chr 8
allele count: 3
allele frequency: 1.424230915305735e-4
allele num: 21064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.231G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*19G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+27G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+27G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+27G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+27G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+27G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+27G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36+27G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223+27G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+27G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

8-144357016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357016
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357016
    reference: chr 8
allele count: 7
allele frequency: 3.711558854718982e-4
allele num: 18860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+44C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*36C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+44C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+44C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36+44C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+44C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+44C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.248C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+44C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+44C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223+44C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32821
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum

8-144357017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357017
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357017
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 18860
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+45G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223+45G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+45G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+45G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*37G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.249G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+45G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36+45G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+45G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+45G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+45G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32810
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

8-144357021-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357021
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357021
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 18602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+49C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.253C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+49C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*36+49C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+49C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+49C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+49C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*41C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+49C>G
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.223+49C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+49C>G
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32640
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

8-144357162-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357162
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357162
    reference: chr 8
allele count: 1
allele frequency: 2.264492753623188e-4
allele num: 4416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+190C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+190C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+190C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.238C>T
  hgvsp: ENSP00000430292.1:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.394C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+190C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+190C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*182C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+190C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+190C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu80Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

8-144357167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357167
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357167
    reference: chr 8
allele count: 2
allele frequency: 4.308487720809996e-4
allele num: 4642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.399C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+195C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+195C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+195C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*56C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.243C>T
  hgvsp: ENST00000521682.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*187C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.223+195C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+195C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+195C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+195C>T
  variant of: http://identifiers.org/hgnc/26786
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro81Pro
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

8-144357170-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357170
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357170
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 4826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+198G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+198G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+198G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.246G>A
  hgvsp: ENST00000521682.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+198G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*190G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+198G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+198G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*59G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.402G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-195G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu82Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

8-144357173-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357173
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357173
    reference: chr 8
allele count: 1
allele frequency: 2.016129032258065e-4
allele num: 4960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*62G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+201G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+201G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-192G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*193G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+201G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.405G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.249G>A
  hgvsp: ENST00000521682.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+201G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+201G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+201G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala83Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

8-144357194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357194
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357194
    reference: chr 8
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+222C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.270C>T
  hgvsp: ENST00000521682.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+222C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.426C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-171C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+222C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*83C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*214C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+222C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+222C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+222C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His90His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

8-144357198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357198
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357198
    reference: chr 8
allele count: 1
allele frequency: 1.461988304093567e-4
allele num: 6840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-167C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+226C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*218C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+226C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.430C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.274C>T
  hgvsp: ENSP00000430292.1:p.Arg92Cys
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+226C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*87C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+226C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+226C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+226C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg92Cys
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

8-144357199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357199
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357199
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 7108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+227G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+227G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+227G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.431G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*88G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+227G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-166G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*219G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.275G>A
  hgvsp: ENSP00000430292.1:p.Arg92His
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+227G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+227G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg92His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

8-144357205-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357205
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357205
    reference: chr 8
allele count: 80
allele frequency: 1.013941698352345e-2
allele num: 7890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+233G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+233G>C
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.437G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+233G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*94G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+233G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-160G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*225G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+233G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.281G>C
  hgvsp: ENSP00000430292.1:p.Trp94Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+233G>C
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5996
  bin: 7.5e0
  variant carriers: 13
hgvs: p.Trp94Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

8-144357213-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357213
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357213
    reference: chr 8
allele count: 6954
allele frequency: 5.785357737104825e-1
allele num: 12020
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+241G>C
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+241G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*233G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*102G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+241G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+241G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.289G>C
  hgvsp: ENSP00000430292.1:p.Val97Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+241G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+241G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-152G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.445G>C
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.25e1
  variant carriers: 1076
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 1.75e1
  variant carriers: 1375
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.75e1
  variant carriers: 578
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 7.5e0
  variant carriers: 930
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.25e1
  variant carriers: 1247
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.5e0
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.25e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 269
hgvs: p.Val97Leu
num of homozygotes: 1998
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

8-144357213-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357213
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357213
    reference: chr 8
allele count: 1
allele frequency: 8.319467554076539e-5
allele num: 12020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+241G>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-152G>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+241G>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.445G>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*233G>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+241G>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*102G>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+241G>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+241G>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.289G>T
  hgvsp: ENSP00000430292.1:p.Val97Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+241G>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val97Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-144357237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357237
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357237
    reference: chr 8
allele count: 2
allele frequency: 1.628664495114007e-4
allele num: 12280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-128G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+265G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.313G>A
  hgvsp: ENSP00000430292.1:p.Asp105Asn
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*257G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+265G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+265G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+265G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+265G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*126G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.469G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+265G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp105Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

8-144357245-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357245
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357245
    reference: chr 8
allele count: 1
allele frequency: 8.140670791273201e-5
allele num: 12284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+273G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.321G>C
  hgvsp: ENST00000521682.1:c.321G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+273G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*265G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+273G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+273G>C
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.477G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*134G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-120G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+273G>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+273G>C
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8019
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val107Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

8-144357272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357272
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357272
    reference: chr 8
allele count: 1
allele frequency: 8.143322475570033e-5
allele num: 12280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.504C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.348C>T
  hgvsp: ENST00000521682.1:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+300C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+300C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+300C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*292C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+300C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+300C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-93C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*161C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+300C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8852
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His116His
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

8-144357325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357325
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357325
    reference: chr 8
allele count: 5
allele frequency: 4.096346059315091e-4
allele num: 12206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*214C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+353C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.557C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.401C>T
  hgvsp: ENSP00000430292.1:p.Thr134Met
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+353C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+353C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+353C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-40C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*345C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+353C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+353C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10151
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr134Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

8-144357345-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357345
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357345
    reference: chr 8
allele count: 81
allele frequency: 6.710853355426678e-3
allele num: 12070
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+373C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+373C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*234C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.577C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+373C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.421C>G
  hgvsp: ENSP00000430292.1:p.Pro141Ala
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+373C>G
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.224-20C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+373C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+373C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*365C>G
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 10340
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 3
hgvs: p.Pro141Ala
num of homozygotes: 2
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

8-144357369-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357369
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357369
    reference: chr 8
allele count: 81
allele frequency: 6.846999154691462e-3
allele num: 11830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*389C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+397C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.601C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+397C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.228C>T
  hgvsp: ENST00000520021.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+397C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+397C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.445C>T
  hgvsp: ENSP00000430292.1:p.Pro149Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+397C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+397C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*258C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 3
hgvs: p.Pro149Ser
num of homozygotes: 2
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

8-144357374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357374
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357374
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 11670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.606C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.233C>T
  hgvsp: ENSP00000427881.1:p.Pro78Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+402C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+402C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+402C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.450C>T
  hgvsp: ENST00000521682.1:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+402C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*394C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+402C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*263C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+402C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro78Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

8-144357380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357380
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357380
    reference: chr 8
allele count: 1
allele frequency: 8.833922261484099e-5
allele num: 11320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+408C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+408C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*269C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.612C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.239C>T
  hgvsp: ENSP00000427881.1:p.Ala80Val
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.456C>T
  hgvsp: ENST00000521682.1:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+408C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*400C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+408C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+408C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+408C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala80Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-144357395-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357395
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357395
    reference: chr 8
allele count: 1
allele frequency: 9.970089730807577e-5
allele num: 10030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+423G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.254G>A
  hgvsp: ENSP00000427881.1:p.Cys85Tyr
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+423G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*415G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.471G>A
  hgvsp: ENST00000521682.1:c.471G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*284G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+423G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+423G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+423G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.627G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+423G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys85Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

8-144357403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357403
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357403
    reference: chr 8
allele count: 9
allele frequency: 9.706643658326143e-4
allele num: 9272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*292C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.262C>T
  hgvsp: ENSP00000427881.1:p.Pro88Ser
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+431C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.635C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*423C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+431C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+431C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+431C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.479C>T
  hgvsp: ENSP00000430292.1:p.Ser160Phe
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+431C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+431C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Pro88Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

8-144357404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357404
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357404
    reference: chr 8
allele count: 2
allele frequency: 2.210433244916003e-4
allele num: 9048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+432C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.636C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+432C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*293C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.263C>T
  hgvsp: ENSP00000427881.1:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+432C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*424C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+432C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+432C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.480C>T
  hgvsp: ENST00000521682.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+432C>T
  variant of: http://identifiers.org/hgnc/26786
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro88Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

8-144357406-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357406
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357406
    reference: chr 8
allele count: 1
allele frequency: 1.11185234600845e-4
allele num: 8994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.638C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+434C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+434C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+434C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+434C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.265C>T
  hgvsp: ENST00000520021.1:c.265C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*295C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.482C>T
  hgvsp: ENSP00000430292.1:p.Pro161Leu
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+434C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+434C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*426C>T
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro161Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

8-144357410-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357410
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357410
    reference: chr 8
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+438A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.486A>G
  hgvsp: ENST00000521682.1:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+438A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+438A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*299A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.269A>G
  hgvsp: ENSP00000427881.1:p.His90Arg
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*430A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+438A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.642A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+438A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+438A>G
  variant of: http://identifiers.org/hgnc/26786
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His90Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-144357439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357439
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357439
    reference: chr 8
allele count: 1
allele frequency: 1.81422351233672e-4
allele num: 5512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+467C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+467C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*459C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+467C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.671C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.*17C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+467C>T
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*328C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+467C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+467C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.298C>T
  hgvsp: ENSP00000427881.1:p.Pro100Ser
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro100Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

8-144357453-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357453
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357453
    reference: chr 8
allele count: 1
allele frequency: 2.525252525252525e-4
allele num: 3960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.312T>C
  hgvsp: ENST00000520021.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*473T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.685T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+481T>C
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+481T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*342T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+481T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+481T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.*31T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+481T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+481T>C
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val104Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

8-144357460-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357460
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357460
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 3308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*349A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.692A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+488A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+488A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+488A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+488A>G
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+488A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.319A>G
  hgvsp: ENSP00000427881.1:p.Met107Val
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+488A>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*480A>G
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met107Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

8-144357462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357462
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357462
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 3132
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+490G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+490G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*351G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.694G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000427881
  ensembl transcript: ENST00000520021
  gene symbol: GLI4
  hgvsc: ENST00000520021.1:c.321G>A
  hgvsp: ENSP00000427881.1:p.Met107Ile
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+490G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+490G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+490G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+490G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*482G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met107Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

8-144357479-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357479
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357479
    reference: chr 8
allele count: 1179
allele frequency: 5.121633362293657e-1
allele num: 2302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+507C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.*57C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+507C>G
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+507C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+507C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+507C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.711C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*368C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*499C>G
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+507C>G
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 7.5e0
  variant carriers: 2056
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 2.5e0
  variant carriers: 1102
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 7.5e0
  variant carriers: 574
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 69
num of homozygotes: 293
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

8-144357515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144357515
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144357515
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 1600
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*999+543G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000344727
  ensembl transcript: ENST00000344692
  gene symbol: GLI4
  hgvsc: ENST00000344692.3:c.*535G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.223+543G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.223+543G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.154+543G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.150+543G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.341+543G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.747G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429295
  ensembl transcript: ENST00000517468
  gene symbol: GLI4
  hgvsc: ENST00000517468.1:c.*404G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430292
  ensembl transcript: ENST00000521682
  gene symbol: GLI4
  hgvsc: ENST00000521682.1:c.*93G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6810
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

8-144358035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144358035
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144358035
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 3590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.224-32G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.155-138G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.224-32G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.151-32G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.342-32G>A
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*1000-32G>A
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.1267G>A
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38987
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4683
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

8-144358043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144358043
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144358043
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 3610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.342-24C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.1275C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.224-24C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.224-24C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.155-130C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.151-24C>T
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*1000-24C>T
  variant of: http://identifiers.org/hgnc/26786
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33801
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

8-144358055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144358055
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 144358055
    reference: chr 8
allele count: 1
allele frequency: 2.631578947368421e-4
allele num: 3800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000523812
  gene symbol: GLI4
  hgvsc: ENST00000523812.1:n.1287T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522033
  gene symbol: GLI4
  hgvsc: ENST00000522033.1:n.342-12T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000345024
  ensembl transcript: ENST00000340042
  gene symbol: GLI4
  hgvsc: ENST00000340042.1:c.224-12T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000264668
  ensembl protein: ENSP00000428966
  ensembl transcript: ENST00000522452
  gene symbol: ZFP41
  hgvsc: ENST00000522452.1:c.*1000-12T>C
  variant of: http://identifiers.org/hgnc/26786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl transcript: ENST00000522479
  gene symbol: GLI4
  hgvsc: ENST00000522479.1:n.151-12T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000429514
  ensembl transcript: ENST00000517530
  gene symbol: GLI4
  hgvsc: ENST00000517530.1:c.155-118T>C
  variant of: http://identifiers.org/hgnc/4320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250571
  ensembl protein: ENSP00000430987
  ensembl transcript: ENST00000523522
  gene symbol: GLI4
  hgvsc: ENST00000523522.1:c.224-12T>C
  variant of: http://identifiers.org/hgnc/4320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34665
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: T

GenotypeQuality
all individuals: 1059
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30536
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8222
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.674353381115612e-4
allele num: 6418
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.279999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: -2.266e0

QD
type: SiteQuality
SIO_000300: 1.929e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.335e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.134e0

DP
type: SiteQuality
SIO_000300: 3.4916e5

GenotypeDepth
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27705
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.400952647800504e-4
allele num: 7138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.16e1

DP
type: SiteQuality
SIO_000300: 4.20547e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

FS
type: SiteQuality
SIO_000300: 4.971e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.054e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.523e0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19098
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.432664756446991e-3
allele num: 698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.64434e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.57e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.824e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -9.278e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
all individuals: 23162
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.78468e5

QD
type: SiteQuality
SIO_000300: 6.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.38e-2

GenotypeDepth
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21572
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.08e-2

DP
type: SiteQuality
SIO_000300: 4.95401e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeDepth
all individuals: 18
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21019
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 2.5e0
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GenotypeQuality
all individuals: 7428
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 849
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.255650426921145e-4
allele num: 7964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.015847216578627e-4
allele num: 9844
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.98e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.044e-1

QD
type: SiteQuality
SIO_000300: 7.25e0

DP
type: SiteQuality
SIO_000300: 5.01459e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.694e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

GenotypeQuality
all individuals: 211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7679
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 6.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

DP
type: SiteQuality
SIO_000300: 5.07672e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.942e0

GenotypeQuality
all individuals: 217
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 23105
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 134
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 52
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variant carriers: 11

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 14

GenotypeQuality
all individuals: 19235
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variant carriers: 9

GenotypeQuality
all individuals: 1254
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variant carriers: 15

GenotypeQuality
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bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 2484
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variant carriers: 27

GenotypeQuality
all individuals: 486
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variant carriers: 22

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 237
bin: 7.25e1
variant carriers: 20

GenotypeQuality
all individuals: 1067
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 734
bin: 9.75e1
variant carriers: 361

GenotypeQuality
all individuals: 885
bin: 6.75e1
variant carriers: 19

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 403
bin: 3.25e1
variant carriers: 12

GenotypeQuality
all individuals: 7788
bin: 6.25e1
variant carriers: 18

Latino
type: Population
allele count: 26
allele frequency: 2.466793168880456e-2
allele num: 1054
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.273504273504274e-3
allele num: 234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.874664622460713e-4
allele num: 10436
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.481389578163772e-4
allele num: 8060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

African
type: Population
allele count: 355
allele frequency: 1.122707147375079e-1
allele num: 3162
num of homozygotes: 23

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

FS
type: SiteQuality
SIO_000300: 1.139e0

QD
type: SiteQuality
SIO_000300: 1.407e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.26867e5

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24669
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variant carriers: 0

GenotypeQuality
all individuals: 18239
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variant carriers: 0

GenotypeQuality
all individuals: 228
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variant carriers: 0

GenotypeQuality
all individuals: 1190
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variant carriers: 0

GenotypeQuality
all individuals: 910
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variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
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variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
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variant carriers: 0

GenotypeQuality
all individuals: 8203
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.104151493080845e-5
allele num: 10984
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.49e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.406e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 1.871e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

QD
type: SiteQuality
SIO_000300: 4.65e0

DP
type: SiteQuality
SIO_000300: 5.39554e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 482
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17411
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variant carriers: 0

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 1147
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variant carriers: 0

GenotypeQuality
all individuals: 2462
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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GenotypeQuality
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GenotypeQuality
all individuals: 43
bin: 4.25e1
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GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
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variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.5074e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.238e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.529e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 240
bin: 7.25e1
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GenotypeQuality
all individuals: 182
bin: 3.75e1
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GenotypeQuality
all individuals: 924
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
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GenotypeQuality
all individuals: 2261
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 483
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variant carriers: 1

GenotypeQuality
all individuals: 1041
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3210
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.25925925925926e-4
allele num: 1080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1340
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.58394e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.070000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.467e1

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.21e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8814
bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 26952
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variant carriers: 1

GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 2.5e0
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GenotypeQuality
all individuals: 106
bin: 5.25e1
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GenotypeQuality
all individuals: 490
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 237
bin: 7.75e1
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GenotypeQuality
all individuals: 371
bin: 3.25e1
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GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 3.101736972704715e-3
allele num: 3224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.678697330871244e-4
allele num: 11914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.17e-2

DP
type: SiteQuality
SIO_000300: 5.62473e5

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
all individuals: 478
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GenotypeQuality
all individuals: 539
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 349
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 480
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GenotypeQuality
all individuals: 86
bin: 4.75e1
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GenotypeQuality
all individuals: 1957
bin: 1.75e1
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GenotypeQuality
all individuals: 93
bin: 5.75e1
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GenotypeQuality
all individuals: 940
bin: 6.75e1
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GenotypeQuality
all individuals: 236
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GenotypeQuality
all individuals: 8851
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 83
bin: 9.25e1
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GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12080
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 3.09981401115933e-4
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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SIO_000300: 4.21e-1

ReadPosRankSum
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MQ
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 6.858710562414266e-4
allele num: 1458
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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African
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.353179972936401e-3
allele num: 1478
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12728
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1172
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.195600191296031e-4
allele num: 8364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

African
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

QD
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InbreedingCoeff
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SIO_000300: -3.17e-2

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.034e0

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 2.38e-1

FS
type: SiteQuality
SIO_000300: 6.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.829e-1

DP
type: SiteQuality
SIO_000300: 5.70125e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

South Asian
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allele count: 10
allele frequency: 1.195600191296031e-3
allele num: 8364
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 1154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 12732
num of homozygotes: 0

QD
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 5.26e-1

MQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 1156
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 12784
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Latino
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African
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Other
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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African
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European (Finnish)
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South Asian
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ClippingRankSum
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DP
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 8376
num of homozygotes: 0

African
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num of homozygotes: 0

European (Finnish)
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East Asian
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num of homozygotes: 0

Latino
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Other
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European (Non-Finnish)
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
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VQSLOD
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DP
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 5.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.193032689095681e-4
allele num: 8382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1174
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12972
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.26e-2

ReadPosRankSum
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MQ
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SIO_000300: 5.965e1

BaseQRankSum
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SIO_000300: -1.572e0

MQRankSum
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SIO_000300: -8.86e-1

DP
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SIO_000300: 5.66064e5

FS
type: SiteQuality
SIO_000300: 1.124e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.248e0

QD
type: SiteQuality
SIO_000300: 5.33e0

VQSLOD
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SIO_000300: -2.252e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.590077913817777e-4
allele num: 12578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 5.5196e5

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 4.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.553e-1

FS
type: SiteQuality
SIO_000300: 5.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 8385
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12558
num of homozygotes: 0

African
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allele count: 5
allele frequency: 1.528117359413203e-3
allele num: 3272
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 8.620689655172414e-4
allele num: 1160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

BaseQRankSum
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QD
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SIO_000300: 1.243e1

MQRankSum
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SIO_000300: 3.58e-1

VQSLOD
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SIO_000300: 4.34e0

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 5.50296e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 835
bin: 6.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 150
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 2.85171102661597e-3
allele num: 3156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

FS
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 3.68e-2

QD
type: SiteQuality
SIO_000300: 1.19e1

DP
type: SiteQuality
SIO_000300: 4.98337e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1202
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.168567807351077e-4
allele num: 3156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.68e-2

ClippingRankSum
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SIO_000300: -2.29e-1

BaseQRankSum
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DP
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MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.83e-1

FS
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.19e1

VQSLOD
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SIO_000300: 3.47e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Finnish)
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allele count: 15
allele frequency: 2.252252252252252e-2
allele num: 666
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

European (Non-Finnish)
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allele count: 40
allele frequency: 3.484320557491289e-3
allele num: 11480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 3
allele frequency: 9.541984732824427e-4
allele num: 3144
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.92489e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1040
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.724137931034483e-3
allele num: 1160
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 9.489466691971911e-5
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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VQSLOD
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FS
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MQRankSum
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SIO_000300: -7.39e-1

ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 4.42741e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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VQSLOD
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DP
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FS
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InbreedingCoeff
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QD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

East Asian
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allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.881234232485931e-4
allele num: 10306
num of homozygotes: 0

Latino
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allele frequency: 1.927194860813704e-2
allele num: 934
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African
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allele count: 256
allele frequency: 8.39344262295082e-2
allele num: 3050
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Other
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allele frequency: 0.0e0
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South Asian
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allele count: 3
allele frequency: 3.955696202531646e-4
allele num: 7584
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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ClippingRankSum
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SIO_000300: 8.3e-2

MQRankSum
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DP
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QD
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MQ
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9840
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South Asian
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allele frequency: 5.374899220639613e-4
allele num: 7442
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -1.296e0

FS
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MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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DP
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BaseQRankSum
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SIO_000300: 1.16e0

ReadPosRankSum
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SIO_000300: -4.06e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.96e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.063377286261165e-4
allele num: 9404
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Latino
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num of homozygotes: 0

South Asian
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QD
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SIO_000300: 1.29e1

InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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East Asian
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South Asian
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Other
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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QD
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MQ
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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MQ
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FS
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VQSLOD
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MQRankSum
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SIO_000300: 4.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
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SIO_000300: 3.17486e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.32e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.488e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.868131868131869e-4
allele num: 1456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.18e-2

VQSLOD
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.166e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.02933e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.801801801801802e-3
allele num: 1110
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.03699e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.17e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

QD
type: SiteQuality
SIO_000300: 1.387e1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1546
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.708e0

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.03914e5

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1556
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-2
allele num: 82
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.593e1

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e0

FS
type: SiteQuality
SIO_000300: 5.119e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.87e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 1.04897e5

VQSLOD
type: SiteQuality
SIO_000300: -2.785e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1084
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.725782414307004e-4
allele num: 2684
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.481e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.754e0

QD
type: SiteQuality
SIO_000300: 6.96e0

DP
type: SiteQuality
SIO_000300: 1.14462e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.99001996007984e-4
allele num: 2004
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.871e1

VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.52e-2

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.16963e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 262
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1056
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 184
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.467e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.45e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 1.19128e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 443
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 91
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 309
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 69
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 113
bin: 5.25e1
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GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 337
bin: 9.75e1
variant carriers: 85

GenotypeQuality
all individuals: 47
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3292
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1094
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 9.803921568627451e-3
allele num: 102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 2.204585537918871e-2
allele num: 2268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 8.016032064128256e-3
allele num: 998
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.109704641350211e-3
allele num: 474
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.666666666666667e-2
allele num: 150
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 4.319654427645789e-3
allele num: 3704
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.692e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.59e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 1.24965e5

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 91

GenotypeQuality
all individuals: 287
bin: 3.25e1
variant carriers: 210

GenotypeQuality
all individuals: 278
bin: 4.75e1
variant carriers: 252

GenotypeQuality
all individuals: 273
bin: 3.75e1
variant carriers: 229

GenotypeQuality
all individuals: 755
bin: 6.25e1
variant carriers: 218

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 86

GenotypeQuality
all individuals: 263
bin: 1.25e1
variant carriers: 215

GenotypeQuality
all individuals: 831
bin: 2.25e1
variant carriers: 193

GenotypeQuality
all individuals: 184
bin: 2.75e1
variant carriers: 114

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 156

GenotypeQuality
all individuals: 168
bin: 8.25e1
variant carriers: 159

GenotypeQuality
all individuals: 172
bin: 7.75e1
variant carriers: 154

GenotypeQuality
all individuals: 320
bin: 1.75e1
variant carriers: 273

GenotypeQuality
all individuals: 1240
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 147

GenotypeQuality
all individuals: 3113
bin: 9.75e1
variant carriers: 3093

GenotypeQuality
all individuals: 139
bin: 7.25e1
variant carriers: 109

GenotypeQuality
all individuals: 266
bin: 6.75e1
variant carriers: 205

GenotypeQuality
all individuals: 3044
bin: 7.5e0
variant carriers: 489

European (Non-Finnish)
type: Population
allele count: 1718
allele frequency: 5.228241022519781e-1
allele num: 3286
num of homozygotes: 409

African
type: Population
allele count: 85
allele frequency: 1.640926640926641e-1
allele num: 518
num of homozygotes: 6

East Asian
type: Population
allele count: 139
allele frequency: 6.556603773584906e-1
allele num: 212
num of homozygotes: 42

Latino
type: Population
allele count: 112
allele frequency: 6.021505376344086e-1
allele num: 186
num of homozygotes: 34

South Asian
type: Population
allele count: 4191
allele frequency: 6.262701733413031e-1
allele num: 6692
num of homozygotes: 1302

Other
type: Population
allele count: 98
allele frequency: 6.621621621621622e-1
allele num: 148
num of homozygotes: 30

European (Finnish)
type: Population
allele count: 611
allele frequency: 6.247443762781186e-1
allele num: 978
num of homozygotes: 175

VQSLOD
type: SiteQuality
SIO_000300: 1.439e1

DP
type: SiteQuality
SIO_000300: 1.57547e5

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

QD
type: SiteQuality
SIO_000300: 2.242e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.067e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 263
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 320
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 978
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.494321578003586e-4
allele num: 6692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.439e1

QD
type: SiteQuality
SIO_000300: 2.242e1

DP
type: SiteQuality
SIO_000300: 1.57547e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.067e-1

GenotypeQuality
all individuals: 538
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7248
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4396
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.75330396475771e-4
allele num: 7264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.479e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.604e0

VQSLOD
type: SiteQuality
SIO_000300: -1.369e0

DP
type: SiteQuality
SIO_000300: 1.70465e5

QD
type: SiteQuality
SIO_000300: 1.244e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.26e-1

GenotypeQuality
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7262
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4580
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.362026695723236e-4
allele num: 7342
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.502e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.72142e5

VQSLOD
type: SiteQuality
SIO_000300: -1.694e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
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GenotypeQuality
all individuals: 4792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7993
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.337613697164259e-4
allele num: 7476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.921e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.697e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.36e-2

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

DP
type: SiteQuality
SIO_000300: 1.73679e5

GenotypeQuality
all individuals: 47
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
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GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1130
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 12
bin: 5.75e1
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GenotypeQuality
all individuals: 9058
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 26
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4778
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.378929950358522e-3
allele num: 3626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.088e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.78e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.571e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

DP
type: SiteQuality
SIO_000300: 1.75759e5

GenotypeQuality
all individuals: 135
bin: 9.75e1
variant carriers: 80

GenotypeQuality
all individuals: 9131
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 6

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 4547
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 45
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.790178571428571e-4
allele num: 3584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.376344086021506e-3
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 79
allele frequency: 1.376306620209059e-1
allele num: 574
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

DP
type: SiteQuality
SIO_000300: 1.76063e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.15e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

QD
type: SiteQuality
SIO_000300: 1.393e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

GenotypeQuality
all individuals: 140
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9109
bin: 7.5e0
variant carriers: 8

GenotypeQuality
all individuals: 35
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 76

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.376344086021506e-3
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.852253280091272e-4
allele num: 3506
num of homozygotes: 0

African
type: Population
allele count: 79
allele frequency: 1.381118881118881e-1
allele num: 572
num of homozygotes: 2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.192e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

DP
type: SiteQuality
SIO_000300: 1.72122e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.273e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.69979e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.93e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.45475705557172e-4
allele num: 6874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.88e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.53e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

DP
type: SiteQuality
SIO_000300: 1.63654e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e0

GenotypeQuality
all individuals: 310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 2289
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variant carriers: 0

GenotypeQuality
all individuals: 910
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GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8172
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 59
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GenotypeQuality
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GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.662786830728301e-4
allele num: 6014
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.169e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.981e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.797e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 1.39238e5

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
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GenotypeQuality
all individuals: 68
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1685
bin: 6.25e1
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GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 9.084302325581395e-4
allele num: 5504
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.54639175257732e-2
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.882352941176471e-3
allele num: 170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.692e0

FS
type: SiteQuality
SIO_000300: 1.182e0

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 1.558e1

MQ
type: SiteQuality
SIO_000300: 5.992e1

VQSLOD
type: SiteQuality
SIO_000300: -7.984e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.63e-2

DP
type: SiteQuality
SIO_000300: 1.26078e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 195
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GenotypeQuality
all individuals: 84
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
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South Asian
type: Population
allele count: 2
allele frequency: 3.750937734433609e-4
allele num: 5332
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.411e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.052e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.783e0

DP
type: SiteQuality
SIO_000300: 1.21819e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 66
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.886792452830189e-4
allele num: 5300
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.841e0

DP
type: SiteQuality
SIO_000300: 1.21619e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.994415636218588e-4
allele num: 5014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

QD
type: SiteQuality
SIO_000300: 1.385e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.63e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.16651e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.63e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.222222222222222e-3
allele num: 450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1812
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

DP
type: SiteQuality
SIO_000300: 8.4622e4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.392e0

VQSLOD
type: SiteQuality
SIO_000300: -2.925e0

QD
type: SiteQuality
SIO_000300: 2.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.45e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 595
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 100
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 5.694760820045558e-4
allele num: 1756
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.4105e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.932e0

QD
type: SiteQuality
SIO_000300: 7.21e0

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
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GenotypeQuality
all individuals: 321
bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.794e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 6.9686e4

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.207e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.495e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.98e-2

GenotypeQuality
all individuals: 73
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6665
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 558
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 2040
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.92e-2

DP
type: SiteQuality
SIO_000300: 6.8467e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

QD
type: SiteQuality
SIO_000300: 1.94e1

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 34

GenotypeQuality
all individuals: 914
bin: 9.75e1
variant carriers: 891

GenotypeQuality
all individuals: 1787
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 13

GenotypeQuality
all individuals: 50
bin: 7.75e1
variant carriers: 24

GenotypeQuality
all individuals: 67
bin: 6.75e1
variant carriers: 31

GenotypeQuality
all individuals: 213
bin: 6.25e1
variant carriers: 125

GenotypeQuality
all individuals: 664
bin: 1.75e1
variant carriers: 617

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 218

GenotypeQuality
all individuals: 664
bin: 2.25e1
variant carriers: 465

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 92

GenotypeQuality
all individuals: 438
bin: 1.25e1
variant carriers: 385

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 127

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 45

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 116

GenotypeQuality
all individuals: 44
bin: 7.25e1
variant carriers: 19

European (Non-Finnish)
type: Population
allele count: 544
allele frequency: 5.08411214953271e-1
allele num: 1070
num of homozygotes: 132

Latino
type: Population
allele count: 59
allele frequency: 5.673076923076923e-1
allele num: 104
num of homozygotes: 15

Other
type: Population
allele count: 14
allele frequency: 5.384615384615384e-1
allele num: 26
num of homozygotes: 2

African
type: Population
allele count: 106
allele frequency: 2.774869109947644e-1
allele num: 382
num of homozygotes: 15

South Asian
type: Population
allele count: 382
allele frequency: 6.324503311258278e-1
allele num: 604
num of homozygotes: 108

East Asian
type: Population
allele count: 63
allele frequency: 6.428571428571429e-1
allele num: 98
num of homozygotes: 18

European (Finnish)
type: Population
allele count: 11
allele frequency: 6.111111111111112e-1
allele num: 18
num of homozygotes: 3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.068e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.519e-1

QD
type: SiteQuality
SIO_000300: 2.113e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 9.5675e4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

GenotypeQuality
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 10
bin: 2.75e1
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GenotypeQuality
all individuals: 387
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2559
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GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 0
bin: 5.25e1
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GenotypeQuality
all individuals: 561
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.379999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.037e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.339e1

DP
type: SiteQuality
SIO_000300: 7.5583e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 166
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 32909
bin: 7.5e0
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GenotypeQuality
all individuals: 2698
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 945
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 8.56e0

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.74895e5

GenotypeQuality
all individuals: 40
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 999
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.400000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 2.077e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 1.84427e5

VQSLOD
type: SiteQuality
SIO_000300: -1.176e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.53e0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9555
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1234
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.708097928436911e-4
allele num: 2124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0