6-31921918-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921918
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921918
    reference: chr 6
allele count: 2
allele frequency: 1.702359470225733e-5
allele num: 117484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-7A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-7A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-7A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-7A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-7A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-7A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-7A>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 7.25e1
  variant carriers: 0
hgvs: c.888-7A>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

6-31921925-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921925
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921925
    reference: chr 6
allele count: 1
allele frequency: 8.4888202237653e-6
allele num: 117802
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-14T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-14T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-14T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-14T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-14T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-14T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-14T>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4075
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-31921930-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921930
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921930
    reference: chr 6
allele count: 1
allele frequency: 8.479318941102651e-6
allele num: 117934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-19G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-19G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-19G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-19G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-19G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-19G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-19G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 14161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3203
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

6-31921931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921931
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921931
    reference: chr 6
allele count: 3
allele frequency: 2.540994714730993e-5
allele num: 118064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-20C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-20C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-20C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-20C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-20C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-20C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-20C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14247
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

6-31921935-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921935
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921935
    reference: chr 6
allele count: 1
allele frequency: 8.450942280064228e-6
allele num: 118330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-24T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-24T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-24T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-24T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-24T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-24T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-24T>C
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

6-31921948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921948
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921948
    reference: chr 6
allele count: 1
allele frequency: 8.41283462049703e-6
allele num: 118866
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-37C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-37C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-37C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-37C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-37C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-37C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-37C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23675
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8738
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

6-31921949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921949
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921949
    reference: chr 6
allele count: 171
allele frequency: 1.43796565700735e-3
allele num: 118918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-38C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-38C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-38C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-38C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-38C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-38C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-38C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23571
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 14649
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25099
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8897
  bin: 9.75e1
  variant carriers: 169
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

6-31921953-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921953
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921953
    reference: chr 6
allele count: 1
allele frequency: 8.396164631996104e-6
allele num: 119102
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-42A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-42A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-42A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-42A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-42A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-42A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-42A>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31921959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921959
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921959
    reference: chr 6
allele count: 1
allele frequency: 8.386025527061704e-6
allele num: 119246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-48C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-48C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-48C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-48C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-48C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-48C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-48C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

6-31921960-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31921960
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31921959
    reference: chr 6
allele count: 1
allele frequency: 8.383916294979712e-6
allele num: 119276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.909-50delT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.888-50delT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.873-50delT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.967-50delT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1527-50delT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1209-50delT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.798-50delT
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8018
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: GA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

6-31922024-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922024
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922024
    reference: chr 6
allele count: 1
allele frequency: 8.306889734345666e-6
allele num: 120382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.797+51G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.908+51G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1208+51G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1526+51G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.872+51G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.887+51G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.966+51G>C
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-31922025-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922025
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922025
    reference: chr 6
allele count: 1
allele frequency: 8.305233958440609e-6
allele num: 120406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.872+50T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.908+50T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1526+50T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.887+50T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.966+50T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.797+50T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1208+50T>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

6-31922026-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922026
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922026
    reference: chr 6
allele count: 1
allele frequency: 8.30937463646486e-6
allele num: 120346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1526+49G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.872+49G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1208+49G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.966+49G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.797+49G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.908+49G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.887+49G>C
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

6-31922032-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922032
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922032
    reference: chr 6
allele count: 5
allele frequency: 4.157796700372538e-5
allele num: 120256
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.887+43C>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1526+43C>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.872+43C>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.797+43C>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1208+43C>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.966+43C>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.908+43C>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

6-31922037-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922037
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922037
    reference: chr 6
allele count: 1
allele frequency: 8.324869715788949e-6
allele num: 120122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1526+38A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.797+38A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.908+38A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.872+38A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.966+38A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.887+38A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1208+38A>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52013
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

6-31922044-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922044
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922044
    reference: chr 6
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.872+31T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1526+31T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.887+31T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.908+31T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1208+31T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.966+31T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.797+31T>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52012
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-31922048-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922048
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922048
    reference: chr 6
allele count: 1
allele frequency: 8.335834083558401e-6
allele num: 119964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1526+27G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.908+27G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1208+27G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.966+27G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.872+27G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.797+27G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.887+27G>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13713
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

6-31922074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922074
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922074
    reference: chr 6
allele count: 1
allele frequency: 8.333194446759221e-6
allele num: 120002
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.887+1G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1526+1G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.908+1G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.966+1G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1208+1G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.872+1G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.797+1G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13714
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
hgvs: c.887+1G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

6-31922075-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922075
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922075
    reference: chr 6
allele count: 1
allele frequency: 8.327642777435419e-6
allele num: 120082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.966A>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1208A>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1526A>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.908A>C
  hgvsp: ENSP00000364574.5:p.Asn303Thr
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.797A>C
  hgvsp: ENSP00000388400.2:p.Asn266Thr
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.872A>C
  hgvsp: ENSP00000397914.1:p.Asn291Thr
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.887A>C
  hgvsp: ENSP00000364578.3:p.Asn296Thr
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13713
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn296Thr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

6-31922091-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922091
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922091
    reference: chr 6
allele count: 1
allele frequency: 8.316838270762986e-6
allele num: 120238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1510A>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.871A>T
  hgvsp: ENSP00000409389.1:p.Met291Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.871A>T
  hgvsp: ENSP00000364578.3:p.Met291Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.892A>T
  hgvsp: ENSP00000364574.5:p.Met298Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.950A>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.781A>T
  hgvsp: ENSP00000388400.2:p.Met261Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1192A>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.856A>T
  hgvsp: ENSP00000397914.1:p.Met286Leu
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52012
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met291Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

6-31922125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922125
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922125
    reference: chr 6
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.837C>T
  hgvsp: ENST00000454913.1:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.837C>T
  hgvsp: ENST00000375429.3:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1158C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.747C>T
  hgvsp: ENST00000444811.2:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.858C>T
  hgvsp: ENST00000375425.5:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.822C>T
  hgvsp: ENST00000441998.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.916C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1476C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala279Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS

http://identifiers.org/exac.variant/6-31922127-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922127
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922127
    reference: chr 6
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1474G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.914G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.856G>T
  hgvsp: ENSP00000364574.5:p.Ala286Ser
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.745G>T
  hgvsp: ENSP00000388400.2:p.Ala249Ser
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.820G>T
  hgvsp: ENSP00000397914.1:p.Ala274Ser
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.835G>T
  hgvsp: ENSP00000364578.3:p.Ala279Ser
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.835G>T
  hgvsp: ENSP00000409389.1:p.Ala279Ser
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1156G>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52015
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala279Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

6-31922139-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922139
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922139
    reference: chr 6
allele count: 1
allele frequency: 8.29531314807134e-6
allele num: 120550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.733C>G
  hgvsp: ENSP00000388400.2:p.Leu245Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.823C>G
  hgvsp: ENSP00000364578.3:p.Leu275Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1462C>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.808C>G
  hgvsp: ENSP00000397914.1:p.Leu270Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.823C>G
  hgvsp: ENSP00000409389.1:p.Leu275Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1144C>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.902C>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.844C>G
  hgvsp: ENSP00000364574.5:p.Leu282Val
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu275Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

6-31922140-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922140
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922140
    reference: chr 6
allele count: 26
allele frequency: 2.15688877090523e-4
allele num: 120544
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.822C>T
  hgvsp: ENST00000375429.3:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1143C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.822C>T
  hgvsp: ENST00000454913.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1461C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.732C>T
  hgvsp: ENST00000444811.2:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.843C>T
  hgvsp: ENST00000375425.5:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.901C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.807C>T
  hgvsp: ENST00000441998.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13714
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr274Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

6-31922158-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922158
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922158
    reference: chr 6
allele count: 1
allele frequency: 8.31766839119658e-6
allele num: 120226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.825A>C
  hgvsp: ENST00000375425.5:c.825A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.804A>C
  hgvsp: ENST00000375429.3:c.804A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.714A>C
  hgvsp: ENST00000444811.2:c.714A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.883A>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1125A>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.789A>C
  hgvsp: ENST00000441998.1:c.789A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.804A>C
  hgvsp: ENST00000454913.1:c.804A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1443A>C
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13710
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly268Gly
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

6-31922171-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922171
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922171
    reference: chr 6
allele count: 3
allele frequency: 2.50731299623903e-5
allele num: 119650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.701T>C
  hgvsp: ENSP00000388400.2:p.Leu234Pro
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.776T>C
  hgvsp: ENSP00000397914.1:p.Leu259Pro
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.812T>C
  hgvsp: ENSP00000364574.5:p.Leu271Pro
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1112T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.791T>C
  hgvsp: ENSP00000409389.1:p.Leu264Pro
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.870T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.791T>C
  hgvsp: ENSP00000364578.3:p.Leu264Pro
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1430T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.776T>C
  hgvsp: ENSP00000414029.2:p.Leu259Pro
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13711
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu264Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

6-31922185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922185
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922185
    reference: chr 6
allele count: 1
allele frequency: 8.448371998715848e-6
allele num: 118366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.856G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.777G>A
  hgvsp: ENST00000454913.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.798G>A
  hgvsp: ENST00000375425.5:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1098G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.777G>A
  hgvsp: ENST00000375429.3:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.687G>A
  hgvsp: ENST00000444811.2:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.762G>A
  hgvsp: ENST00000441998.1:c.762G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.762G>A
  hgvsp: ENST00000436289.2:c.762G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1416G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13710
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg259Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

6-31922192-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922192
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922192
    reference: chr 6
allele count: 1
allele frequency: 8.48219587086705e-6
allele num: 117894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.680C>T
  hgvsp: ENSP00000388400.2:p.Ala227Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.791C>T
  hgvsp: ENSP00000364574.5:p.Ala264Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.755C>T
  hgvsp: ENSP00000397914.1:p.Ala252Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.770C>T
  hgvsp: ENSP00000364578.3:p.Ala257Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1091C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.770C>T
  hgvsp: ENSP00000409389.1:p.Ala257Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.755C>T
  hgvsp: ENSP00000414029.2:p.Ala252Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.849C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1409C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala257Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

6-31922195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922195
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922195
    reference: chr 6
allele count: 6
allele frequency: 5.103516322746372e-5
allele num: 117566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.767G>A
  hgvsp: ENSP00000409389.1:p.Arg256Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.788G>A
  hgvsp: ENSP00000364574.5:p.Arg263Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.767G>A
  hgvsp: ENSP00000364578.3:p.Arg256Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1088G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.846G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1406G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.752G>A
  hgvsp: ENSP00000397914.1:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.752G>A
  hgvsp: ENSP00000414029.2:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.677G>A
  hgvsp: ENSP00000388400.2:p.Arg226Gln
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13711
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52018
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg256Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

6-31922196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922196
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922196
    reference: chr 6
allele count: 2
allele frequency: 1.703258333191395e-5
allele num: 117422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.751C>T
  hgvsp: ENSP00000414029.2:p.Arg251Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.751C>T
  hgvsp: ENSP00000397914.1:p.Arg251Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.845C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.787C>T
  hgvsp: ENSP00000364574.5:p.Arg263Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.766C>T
  hgvsp: ENSP00000364578.3:p.Arg256Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.766C>T
  hgvsp: ENSP00000409389.1:p.Arg256Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1405C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.676C>T
  hgvsp: ENSP00000388400.2:p.Arg226Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1087C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13711
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg256Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

6-31922198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922198
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922198
    reference: chr 6
allele count: 11
allele frequency: 9.379743165578048e-5
allele num: 117274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.749G>A
  hgvsp: ENSP00000414029.2:p.Arg250Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.764G>A
  hgvsp: ENSP00000409389.1:p.Arg255Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1403G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.764G>A
  hgvsp: ENSP00000364578.3:p.Arg255Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1085G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.785G>A
  hgvsp: ENSP00000364574.5:p.Arg262Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.674G>A
  hgvsp: ENSP00000388400.2:p.Arg225Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.843G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.749G>A
  hgvsp: ENSP00000397914.1:p.Arg250Gln
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg255Gln
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

6-31922199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922199
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922199
    reference: chr 6
allele count: 1
allele frequency: 8.540001366400219e-6
allele num: 117096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1084C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.763C>T
  hgvsp: ENSP00000409389.1:p.Arg255Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.748C>T
  hgvsp: ENSP00000397914.1:p.Arg250Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.784C>T
  hgvsp: ENSP00000364574.5:p.Arg262Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.763C>T
  hgvsp: ENSP00000364578.3:p.Arg255Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.673C>T
  hgvsp: ENSP00000388400.2:p.Arg225Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.842C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1402C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.748C>T
  hgvsp: ENSP00000414029.2:p.Arg250Trp
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg255Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

6-31922201-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922201
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922201
    reference: chr 6
allele count: 1
allele frequency: 8.540147232138282e-6
allele num: 117094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.761A>G
  hgvsp: ENSP00000409389.1:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.671A>G
  hgvsp: ENSP00000388400.2:p.Glu224Gly
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.746A>G
  hgvsp: ENSP00000414029.2:p.Glu249Gly
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.782A>G
  hgvsp: ENSP00000364574.5:p.Glu261Gly
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.761A>G
  hgvsp: ENSP00000364578.3:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1082A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1400A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.746A>G
  hgvsp: ENSP00000397914.1:p.Glu249Gly
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.840A>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13713
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu254Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-31922215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922215
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922215
    reference: chr 6
allele count: 10
allele frequency: 8.613412806422161e-5
allele num: 116098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.747G>A
  hgvsp: ENST00000454913.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1386G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.826G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.732G>A
  hgvsp: ENST00000441998.1:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.732G>A
  hgvsp: ENST00000436289.2:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.657G>A
  hgvsp: ENST00000444811.2:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.768G>A
  hgvsp: ENST00000375425.5:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1068G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.747G>A
  hgvsp: ENST00000375429.3:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser249Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

6-31922216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922216
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922216
    reference: chr 6
allele count: 1
allele frequency: 8.624853377492582e-6
allele num: 115944
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.746C>T
  hgvsp: ENSP00000364578.3:p.Ser249Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.767C>T
  hgvsp: ENSP00000364574.5:p.Ser256Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.746C>T
  hgvsp: ENSP00000409389.1:p.Ser249Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.825C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.656C>T
  hgvsp: ENSP00000388400.2:p.Ser219Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.731C>T
  hgvsp: ENSP00000414029.2:p.Ser244Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1067C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.731C>T
  hgvsp: ENSP00000397914.1:p.Ser244Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1385C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13715
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser249Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

6-31922236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922236
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922236
    reference: chr 6
allele count: 1
allele frequency: 8.703371686191231e-6
allele num: 114898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.822-17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1064-17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.728-17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.653-17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.743-17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1382-17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.743-17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.764-17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.728-17G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

6-31922240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922240
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922240
    reference: chr 6
allele count: 1
allele frequency: 8.707767328456984e-6
allele num: 114840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.728-21C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1382-21C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.653-21C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.728-21C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.764-21C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1064-21C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.822-21C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.743-21C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.743-21C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13717
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ

6-31922244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922244
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922244
    reference: chr 6
allele count: 1
allele frequency: 8.731946700197342e-6
allele num: 114522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1064-25G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.743-25G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.743-25G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1382-25G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.822-25G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.764-25G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.728-25G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.653-25G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.728-25G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

6-31922251-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922251
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922251
    reference: chr 6
allele count: 2
allele frequency: 1.74864916851732e-5
allele num: 114374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.822-32A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.728-32A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.728-32A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.764-32A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1064-32A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.653-32A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1382-32A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.743-32A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.743-32A>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-31922254-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922254
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922254
    reference: chr 6
allele count: 89064
allele frequency: 7.746716534748195e-1
allele num: 114970
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.653-35T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.728-35T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1382-35T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.822-35T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.728-35T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.743-35T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.743-35T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1064-35T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.764-35T>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 9.25e1
  variant carriers: 1862
genotype depth: GenotypeDepth
  all individuals: 39652
  bin: 9.75e1
  variant carriers: 38589
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 410
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 594
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 1.25e1
  variant carriers: 1768
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 7.5e0
  variant carriers: 2508
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 491
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 8.25e1
  variant carriers: 1565
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 8.75e1
  variant carriers: 1649
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 5.75e1
  variant carriers: 766
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.5e0
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.75e1
  variant carriers: 1399
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.25e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 7.25e1
  variant carriers: 1233
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 2.75e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 468
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.25e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 6.25e1
  variant carriers: 922
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 6.75e1
  variant carriers: 1108
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 2.25e1
  variant carriers: 1009
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 1.75e1
  variant carriers: 792
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 253
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 54883
  bin: 9.75e1
  variant carriers: 51595
num of homozygotes: 35074
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

6-31922259-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922259
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922259
    reference: chr 6
allele count: 8
allele frequency: 7.014836378941461e-5
allele num: 114044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1064-40C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.743-40C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.728-40C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.764-40C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1382-40C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.743-40C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.653-40C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.822-40C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.728-40C>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38468
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-31922286-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922286
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922286
    reference: chr 6
allele count: 2
allele frequency: 1.757592800899888e-5
allele num: 113792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.742+46A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.763+46A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.742+46A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.727+46A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.727+46A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1381+46A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.821+46A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1063+46A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.652+46A>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/6-31922288-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922288
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922286
    reference: chr 6
allele count: 62
allele frequency: 5.449591280653951e-4
allele num: 113770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1381+42_1381+43delGT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.763+42_763+43delGT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.652+42_652+43delGT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.821+42_821+43delGT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.742+42_742+43delGT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.727+42_727+43delGT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.742+42_742+43delGT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.727+42_727+43delGT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1063+42_1063+43delGT
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AAC
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

6-31922298-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922298
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922298
    reference: chr 6
allele count: 1
allele frequency: 8.782715615668365e-6
allele num: 113860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.763+34T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.742+34T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.742+34T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.821+34T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.652+34T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.727+34T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1063+34T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1381+34T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.727+34T>C
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-31922315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922315
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922315
    reference: chr 6
allele count: 1
allele frequency: 8.740494712000699e-6
allele num: 114410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.727+17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.742+17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.727+17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.742+17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.821+17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.763+17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.652+17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1381+17G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1063+17G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8649
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

6-31922318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922318
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922318
    reference: chr 6
allele count: 1
allele frequency: 8.731336767659129e-6
allele num: 114530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1063+14G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.763+14G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.727+14G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.742+14G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1381+14G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.742+14G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.727+14G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.821+14G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.652+14G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8647
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/6-31922322-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922322
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922322
    reference: chr 6
allele count: 1
allele frequency: 8.708829010851202e-6
allele num: 114826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.763+10T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1063+10T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.652+10T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.727+10T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.742+10T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.727+10T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.742+10T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1381+10T>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.821+10T>G
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10303
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

6-31922334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922334
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922334
    reference: chr 6
allele count: 21
allele frequency: 1.821209282963888e-4
allele num: 115308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.650G>A
  hgvsp: ENSP00000388400.2:p.Arg217His
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.819G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.725G>A
  hgvsp: ENSP00000397914.1:p.Arg242His
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.725G>A
  hgvsp: ENSP00000414029.2:p.Arg242His
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.740G>A
  hgvsp: ENSP00000409389.1:p.Arg247His
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.761G>A
  hgvsp: ENSP00000364574.5:p.Arg254His
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1061G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.740G>A
  hgvsp: ENSP00000364578.3:p.Arg247His
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1379G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg247His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

6-31922335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922335
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922335
    reference: chr 6
allele count: 3
allele frequency: 2.595245510225267e-5
allele num: 115596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1378C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.724C>T
  hgvsp: ENSP00000414029.2:p.Arg242Cys
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.739C>T
  hgvsp: ENSP00000409389.1:p.Arg247Cys
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.760C>T
  hgvsp: ENSP00000364574.5:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.739C>T
  hgvsp: ENSP00000364578.3:p.Arg247Cys
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.724C>T
  hgvsp: ENSP00000397914.1:p.Arg242Cys
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.649C>T
  hgvsp: ENSP00000388400.2:p.Arg217Cys
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.818C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1060C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg247Cys
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-31922339-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922339
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922339
    reference: chr 6
allele count: 6
allele frequency: 5.177323323841574e-5
allele num: 115890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.756T>A
  hgvsp: ENST00000375425.5:c.756T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1374T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.735T>A
  hgvsp: ENST00000454913.1:c.735T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.720T>A
  hgvsp: ENST00000441998.1:c.720T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.720T>A
  hgvsp: ENST00000436289.2:c.720T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1056T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.814T>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.735T>A
  hgvsp: ENST00000375429.3:c.735T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.645T>A
  hgvsp: ENST00000444811.2:c.645T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro245Pro
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

6-31922345-CTCTCGGTCTCGGTCTCGATCCCGCTCCCGATCCCTGTCCCGTTCCCGGTCTCGATCTCGATCCCGATCCCGATCCCTGTCCCGCTCTCTGTCTCTGTCTCGATCCCGGTCTCGATCCCGCTCCCGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922345
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922219
    reference: chr 6
allele count: 89
allele frequency: 7.67413385758877e-4
allele num: 115974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsp: ENSP00000414029.2:p.Asp196_Arg237del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsp: ENSP00000364578.3:p.Asp201_Arg242del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsp: ENSP00000397914.1:p.Asp196_Arg237del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsp: ENSP00000409389.1:p.Asp201_Arg242del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsp: ENSP00000364574.5:p.Asp208_Arg249del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsp: ENSP00000388400.2:p.Asp171_Arg212del
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 9.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10169
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 2
hgvs: p.Asp201_Arg242del
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: CTCTCGGTCTCGGTCTCGATCCCGCTCCCGATCCCTGTCCCGTTCCCGGTCTCGATCTCGATCCCGATCCCGATCCCTGTCCCGCTCTCTGTCTCTGTCTCGATCCCGGTCTCGATCCCGCTCCCGA
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

6-31922345-C-CTCTCGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922345
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922351
    reference: chr 6
allele count: 3
allele frequency: 2.586786693569248e-5
allele num: 115974
alternate allele: CTCTCGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.802_807dupCCGAGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.633_638dupCCGAGA
  hgvsp: ENSP00000388400.2:p.Asp211_Arg212dup
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.744_749dupCCGAGA
  hgvsp: ENSP00000364574.5:p.Asp248_Arg249dup
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1044_1049dupCCGAGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.723_728dupCCGAGA
  hgvsp: ENSP00000409389.1:p.Asp241_Arg242dup
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1362_1367dupCCGAGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.708_713dupCCGAGA
  hgvsp: ENSP00000414029.2:p.Asp236_Arg237dup
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.723_728dupCCGAGA
  hgvsp: ENSP00000364578.3:p.Asp241_Arg242dup
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.708_713dupCCGAGA
  hgvsp: ENSP00000397914.1:p.Asp236_Arg237dup
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14525
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9183
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp241_Arg242dup
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

6-31922345-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922345
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922345
    reference: chr 6
allele count: 1
allele frequency: 8.622622311897494e-6
allele num: 115974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.714G>C
  hgvsp: ENSP00000397914.1:p.Glu238Asp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.750G>C
  hgvsp: ENSP00000364574.5:p.Glu250Asp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1368G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1050G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.729G>C
  hgvsp: ENSP00000409389.1:p.Glu243Asp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.729G>C
  hgvsp: ENSP00000364578.3:p.Glu243Asp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.808G>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.714G>C
  hgvsp: ENSP00000414029.2:p.Glu238Asp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.639G>C
  hgvsp: ENSP00000388400.2:p.Glu213Asp
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14258
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu243Asp
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

6-31922345-CTCTCGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922345
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922339
    reference: chr 6
allele count: 957
allele frequency: 8.251849552485903e-3
allele num: 115974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.708_713delCCGAGA
  hgvsp: ENSP00000414029.2:p.Asp236_Arg237del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.723_728delCCGAGA
  hgvsp: ENSP00000409389.1:p.Asp241_Arg242del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.744_749delCCGAGA
  hgvsp: ENSP00000364574.5:p.Asp248_Arg249del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.633_638delCCGAGA
  hgvsp: ENSP00000388400.2:p.Asp211_Arg212del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.802_807delCCGAGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.708_713delCCGAGA
  hgvsp: ENSP00000397914.1:p.Asp236_Arg237del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.723_728delCCGAGA
  hgvsp: ENSP00000364578.3:p.Asp241_Arg242del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1362_1367delCCGAGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1044_1049delCCGAGA
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 3.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 14258
  bin: 2.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14525
  bin: 3.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 4.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 5.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 21578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp241_Arg242del
num of homozygotes: 37
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: CTCTCGG
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

6-31922349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922349
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922349
    reference: chr 6
allele count: 3
allele frequency: 2.637594513803411e-5
allele num: 113740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.635G>A
  hgvsp: ENSP00000388400.2:p.Arg212Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.710G>A
  hgvsp: ENSP00000397914.1:p.Arg237Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.725G>A
  hgvsp: ENSP00000364578.3:p.Arg242Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.725G>A
  hgvsp: ENSP00000409389.1:p.Arg242Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.710G>A
  hgvsp: ENSP00000414029.2:p.Arg237Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.746G>A
  hgvsp: ENSP00000364574.5:p.Arg249Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.804G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1046G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1364G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3928
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg242Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31922350-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922350
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922350
    reference: chr 6
allele count: 1
allele frequency: 8.786265310067303e-6
allele num: 113814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.634C>T
  hgvsp: ENSP00000388400.2:p.Arg212Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.803C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.709C>T
  hgvsp: ENSP00000397914.1:p.Arg237Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.709C>T
  hgvsp: ENSP00000414029.2:p.Arg237Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1363C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1045C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.724C>T
  hgvsp: ENSP00000409389.1:p.Arg242Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.745C>T
  hgvsp: ENSP00000364574.5:p.Arg249Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.724C>T
  hgvsp: ENSP00000364578.3:p.Arg242Ter
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg242Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31922352-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922352
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922352
    reference: chr 6
allele count: 1
allele frequency: 8.770698849284312e-6
allele num: 114016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.722A>T
  hgvsp: ENSP00000409389.1:p.Asp241Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1043A>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.801A>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.707A>T
  hgvsp: ENSP00000397914.1:p.Asp236Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.743A>T
  hgvsp: ENSP00000364574.5:p.Asp248Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.707A>T
  hgvsp: ENSP00000414029.2:p.Asp236Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.722A>T
  hgvsp: ENSP00000364578.3:p.Asp241Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.632A>T
  hgvsp: ENSP00000388400.2:p.Asp211Val
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1361A>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp241Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-31922355-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922355
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922355
    reference: chr 6
allele count: 1
allele frequency: 8.619500758516067e-6
allele num: 116016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.629G>T
  hgvsp: ENSP00000388400.2:p.Arg210Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.719G>T
  hgvsp: ENSP00000409389.1:p.Arg240Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.704G>T
  hgvsp: ENSP00000397914.1:p.Arg235Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.740G>T
  hgvsp: ENSP00000364574.5:p.Arg247Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1040G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.719G>T
  hgvsp: ENSP00000364578.3:p.Arg240Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.704G>T
  hgvsp: ENSP00000414029.2:p.Arg235Leu
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.798G>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1358G>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg240Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

6-31922355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922355
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922355
    reference: chr 6
allele count: 3
allele frequency: 2.58585022755482e-5
allele num: 116016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1040G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.740G>A
  hgvsp: ENSP00000364574.5:p.Arg247Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.629G>A
  hgvsp: ENSP00000388400.2:p.Arg210Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.719G>A
  hgvsp: ENSP00000409389.1:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.704G>A
  hgvsp: ENSP00000414029.2:p.Arg235Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.719G>A
  hgvsp: ENSP00000364578.3:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.798G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.704G>A
  hgvsp: ENSP00000397914.1:p.Arg235Gln
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1358G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14900
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg240Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-31922356-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922356
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922356
    reference: chr 6
allele count: 1
allele frequency: 9.929106181861509e-6
allele num: 100714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.703C>T
  hgvsp: ENSP00000414029.2:p.Arg235Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.628C>T
  hgvsp: ENSP00000388400.2:p.Arg210Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.718C>T
  hgvsp: ENSP00000409389.1:p.Arg240Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.718C>T
  hgvsp: ENSP00000364578.3:p.Arg240Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.739C>T
  hgvsp: ENSP00000364574.5:p.Arg247Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.703C>T
  hgvsp: ENSP00000397914.1:p.Arg235Ter
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.797C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1039C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1357C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9351
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg240Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

6-31922356-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922356
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922356
    reference: chr 6
allele count: 349
allele frequency: 3.465258057469667e-3
allele num: 100714
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.718C>A
  hgvsp: ENST00000375429.3:c.718C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.797C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1357C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.739C>A
  hgvsp: ENST00000375425.5:c.739C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.703C>A
  hgvsp: ENST00000436289.2:c.703C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1039C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.718C>A
  hgvsp: ENST00000454913.1:c.718C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.628C>A
  hgvsp: ENST00000444811.2:c.628C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.703C>A
  hgvsp: ENST00000441998.1:c.703C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 2.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 15128
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14628
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 9351
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 2.25e1
  variant carriers: 40
hgvs: p.Arg240Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-31922360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922360
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922360
    reference: chr 6
allele count: 227
allele frequency: 2.204225899168803e-3
allele num: 102984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.735A>G
  hgvsp: ENST00000375425.5:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.624A>G
  hgvsp: ENST00000444811.2:c.624A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.793A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.714A>G
  hgvsp: ENST00000375429.3:c.714A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1353A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.699A>G
  hgvsp: ENST00000436289.2:c.699A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.714A>G
  hgvsp: ENST00000454913.1:c.714A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1035A>G
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.699A>G
  hgvsp: ENST00000441998.1:c.699A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 2.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15759
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14993
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 3.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 9.25e1
  variant carriers: 8
hgvs: p.Arg238Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

6-31922363-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922363
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922363
    reference: chr 6
allele count: 204
allele frequency: 1.999843149556898e-3
allele num: 102008
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.732T>C
  hgvsp: ENST00000375425.5:c.732T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.711T>C
  hgvsp: ENST00000375429.3:c.711T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.696T>C
  hgvsp: ENST00000441998.1:c.696T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1032T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.621T>C
  hgvsp: ENST00000444811.2:c.621T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.790T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1350T>C
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.696T>C
  hgvsp: ENST00000436289.2:c.696T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.711T>C
  hgvsp: ENST00000454913.1:c.711T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15305
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16463
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 4.75e1
  variant carriers: 12
hgvs: p.Asp237Asp
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

6-31922365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922365
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922365
    reference: chr 6
allele count: 157
allele frequency: 1.494327267189523e-3
allele num: 105064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.694G>A
  hgvsp: ENSP00000414029.2:p.Asp232Asn
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.619G>A
  hgvsp: ENSP00000388400.2:p.Asp207Asn
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1348G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.709G>A
  hgvsp: ENSP00000364578.3:p.Asp237Asn
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1030G>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.730G>A
  hgvsp: ENSP00000364574.5:p.Asp244Asn
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.694G>A
  hgvsp: ENSP00000397914.1:p.Asp232Asn
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.709G>A
  hgvsp: ENSP00000409389.1:p.Asp237Asn
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.788G>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 16759
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15527
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9555
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 6089
  bin: 2.5e0
  variant carriers: 11
hgvs: p.Asp237Asn
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

6-31922367-C-CTCTCATG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922367
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922374
    reference: chr 6
allele count: 8
allele frequency: 6.746955436359343e-5
allele num: 118572
alternate allele: CTCTCATG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.785_786insCATGAGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.691_692insCATGAGA
  hgvsp: ENSP00000397914.1:p.Arg231ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.727_728insCATGAGA
  hgvsp: ENSP00000364574.5:p.Arg243ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.706_707insCATGAGA
  hgvsp: ENSP00000364578.3:p.Arg236ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.706_707insCATGAGA
  hgvsp: ENSP00000409389.1:p.Arg236ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1027_1028insCATGAGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1345_1346insCATGAGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.691_692insCATGAGA
  hgvsp: ENSP00000414029.2:p.Arg231ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.616_617insCATGAGA
  hgvsp: ENSP00000388400.2:p.Arg206ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg236ProfsTer2
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

6-31922368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922368
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922368
    reference: chr 6
allele count: 1
allele frequency: 9.764099359475081e-6
allele num: 102416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.706C>T
  hgvsp: ENSP00000409389.1:p.Arg236Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1027C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1345C>T
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.727C>T
  hgvsp: ENSP00000364574.5:p.Arg243Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.706C>T
  hgvsp: ENSP00000364578.3:p.Arg236Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.616C>T
  hgvsp: ENSP00000388400.2:p.Arg206Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.691C>T
  hgvsp: ENSP00000414029.2:p.Arg231Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.691C>T
  hgvsp: ENSP00000397914.1:p.Arg231Trp
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.785C>T
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15672
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg236Trp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

6-31922368-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922368
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922368
    reference: chr 6
allele count: 85
allele frequency: 8.299484455553819e-4
allele num: 102416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.785C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.706C>A
  hgvsp: ENST00000454913.1:c.706C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.616C>A
  hgvsp: ENST00000444811.2:c.616C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.727C>A
  hgvsp: ENST00000375425.5:c.727C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.706C>A
  hgvsp: ENST00000375429.3:c.706C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1345C>A
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.691C>A
  hgvsp: ENST00000441998.1:c.691C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.691C>A
  hgvsp: ENST00000436289.2:c.691C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1027C>A
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17297
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15672
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9024
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 5.25e1
  variant carriers: 2
hgvs: p.Arg236Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

6-31922369-CTCCCGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922369
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922363
    reference: chr 6
allele count: 1
allele frequency: 8.430850166930833e-6
allele num: 118612
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.609_614delTCGGGA
  hgvsp: ENSP00000388400.2:p.Asp203_Arg204del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.699_704delTCGGGA
  hgvsp: ENSP00000364578.3:p.Asp233_Arg234del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.699_704delTCGGGA
  hgvsp: ENSP00000409389.1:p.Asp233_Arg234del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.684_689delTCGGGA
  hgvsp: ENSP00000397914.1:p.Asp228_Arg229del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1338_1343delTCGGGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.684_689delTCGGGA
  hgvsp: ENSP00000414029.2:p.Asp228_Arg229del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1020_1025delTCGGGA
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.720_725delTCGGGA
  hgvsp: ENSP00000364574.5:p.Asp240_Arg241del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.778_783delTCGGGA
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp233_Arg234del
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: CTCCCGA
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

6-31922369-CTCCCGATCCCTGTCCCGTTCCCGGTCTCGATCTCGATCCCGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922369
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922327
    reference: chr 6
allele count: 2
allele frequency: 1.686170033386167e-5
allele num: 118612
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsp: ENSP00000388400.2:p.Asp191_Arg204del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsp: ENSP00000414029.2:p.Asp216_Arg229del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsp: ENSP00000397914.1:p.Asp216_Arg229del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsp: ENSP00000364578.3:p.Asp221_Arg234del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsp: ENSP00000409389.1:p.Asp221_Arg234del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsp: ENSP00000364574.5:p.Asp228_Arg241del
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16105
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4222
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24330
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp221_Arg234del
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: CTCCCGATCCCTGTCCCGTTCCCGGTCTCGATCTCGATCCCGA
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

6-31922371-C-CATGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922371
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31922375
    reference: chr 6
allele count: 4
allele frequency: 3.366209984178813e-5
allele num: 118828
alternate allele: CATGG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364574
  ensembl transcript: ENST00000375425
  gene symbol: NELFE
  hgvsc: ENST00000375425.5:c.723_724insCCAT
  hgvsp: ENSP00000364574.5:p.Glu242ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000388400
  ensembl transcript: ENST00000444811
  gene symbol: NELFE
  hgvsc: ENST00000444811.2:c.612_613insCCAT
  hgvsp: ENSP00000388400.2:p.Glu205ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000481121
  gene symbol: NELFE
  hgvsc: ENST00000481121.1:n.781_782insCCAT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000492185
  gene symbol: NELFE
  hgvsc: ENST00000492185.1:n.1023_1024insCCAT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204356
  ensembl transcript: ENST00000488426
  gene symbol: NELFE
  hgvsc: ENST00000488426.1:n.1341_1342insCCAT
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000409389
  ensembl transcript: ENST00000454913
  gene symbol: NELFE
  hgvsc: ENST00000454913.1:c.702_703insCCAT
  hgvsp: ENSP00000409389.1:p.Glu235ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000414029
  ensembl transcript: ENST00000436289
  gene symbol: NELFE
  hgvsc: ENST00000436289.2:c.687_688insCCAT
  hgvsp: ENSP00000414029.2:p.Glu230ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000397914
  ensembl transcript: ENST00000441998
  gene symbol: NELFE
  hgvsc: ENST00000441998.1:c.687_688insCCAT
  hgvsp: ENSP00000397914.1:p.Glu230ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204356
  ensembl protein: ENSP00000364578
  ensembl transcript: ENST00000375429
  gene symbol: NELFE
  hgvsc: ENST00000375429.3:c.702_703insCCAT
  hgvsp: ENSP00000364578.3:p.Glu235ProfsTer2
  variant of: http://identifiers.org/hgnc/13974
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Glu235ProfsTer2
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

6-31922371-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31922371
    reference: chr 6
allele count: 7
allele frequency: 5.890867472312923e-5
allele num: 118828
alternate allele: G
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
hgvs: p.Glu235Gln
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 26209
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7536
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8661
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.108292925525301e-5
allele num: 64344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.225e1

FS
type: SiteQuality
SIO_000300: 1.582e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 1.721973e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

GenotypeQuality
all individuals: 8689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25506
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549090683768628e-5
allele num: 64554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

FS
type: SiteQuality
SIO_000300: 3.898e0

DP
type: SiteQuality
SIO_000300: 1.72499e6

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 1.42e1

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8692
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547269070091289e-5
allele num: 64630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.729336e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.776e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.205e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.933999999999999e-1

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8697
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545069682642687e-5
allele num: 64722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743071291615827e-4
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.731775e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.47e1

FS
type: SiteQuality
SIO_000300: 2.058e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

GenotypeQuality
all individuals: 7739
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8703
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4193
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25642
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540642139643804e-5
allele num: 64908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.092e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

FS
type: SiteQuality
SIO_000300: 1.5121e1

DP
type: SiteQuality
SIO_000300: 1.7358e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.595e0

QD
type: SiteQuality
SIO_000300: 1.271e1

MQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25519
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531956614988664e-5
allele num: 65276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.185e0

DP
type: SiteQuality
SIO_000300: 1.748581e6

MQRankSum
type: SiteQuality
SIO_000300: -1.339e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.497e0

QD
type: SiteQuality
SIO_000300: 1.848e1

GenotypeQuality
all individuals: 438
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3640
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4358
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 9.25e1
variant carriers: 1

Other
type: Population
allele count: 3
allele frequency: 3.36322869955157e-3
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 38
allele frequency: 3.295750216825672e-3
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.126512482769183e-4
allele num: 65290
num of homozygotes: 1

African
type: Population
allele count: 90
allele frequency: 9.420138162026376e-3
allele num: 9554
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

DP
type: SiteQuality
SIO_000300: 1.752613e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8852
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529005229197884e-5
allele num: 65402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

DP
type: SiteQuality
SIO_000300: 1.756114e6

VQSLOD
type: SiteQuality
SIO_000300: -7.455000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.882e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

GenotypeQuality
all individuals: 1885
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4482
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8865
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25608
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526670941345302e-5
allele num: 65502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.57e0

FS
type: SiteQuality
SIO_000300: 1.726e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.882e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.494e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.7618e6

GenotypeQuality
all individuals: 254
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4508
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8871
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.042e1

DP
type: SiteQuality
SIO_000300: 1.763023e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.603e1

GenotypeQuality
all individuals: 1015
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 52013
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505072092953252e-5
allele num: 66442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15922
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.904e1

DP
type: SiteQuality
SIO_000300: 4.553096e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 1.981e0

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.08e-2

QD
type: SiteQuality
SIO_000300: 1.469e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 4.552024e6

VQSLOD
type: SiteQuality
SIO_000300: -3.075e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 1.3746e1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.69e0

QD
type: SiteQuality
SIO_000300: 1.36e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505072092953252e-5
allele num: 66442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.372e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.550792e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.372e0

QD
type: SiteQuality
SIO_000300: 1.72e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505570611261668e-5
allele num: 66420
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.457814661134163e-4
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.48e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.363e1

FS
type: SiteQuality
SIO_000300: 1.805e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 4.546134e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 586
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

MQ
type: SiteQuality
SIO_000300: 5.902e1

QD
type: SiteQuality
SIO_000300: 1.497e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 4.543658e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

FS
type: SiteQuality
SIO_000300: 3.031e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

DP
type: SiteQuality
SIO_000300: 4.542021e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.52e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.173e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele frequency: 6.418485237483954e-5
allele num: 15580
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East Asian
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African
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DP
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 6.2e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.879e0

DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8652
num of homozygotes: 0

Other
type: Population
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allele num: 896
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.507113576079093e-5
allele num: 66352
num of homozygotes: 0

European (Finnish)
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allele num: 6614
num of homozygotes: 0

Latino
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num of homozygotes: 0

DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

QD
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FS
type: SiteQuality
SIO_000300: 1.02e1

ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.881e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

DP
type: SiteQuality
SIO_000300: 4.550368e6

VQSLOD
type: SiteQuality
SIO_000300: -2.43e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 15966
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

DP
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SIO_000300: 4.565131e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-1

MQ
type: SiteQuality
SIO_000300: 5.694e1

QD
type: SiteQuality
SIO_000300: 1.133e1

FS
type: SiteQuality
SIO_000300: 1.907e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e0

VQSLOD
type: SiteQuality
SIO_000300: -2.792e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
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SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 4.565528e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.213e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.466e0

DP
type: SiteQuality
SIO_000300: 4.565379e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: -2.94e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

MQRankSum
type: SiteQuality
SIO_000300: -2.28e0

FS
type: SiteQuality
SIO_000300: 2.547e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.213e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

GenotypeQuality
all individuals: 303
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.500480861704174e-3
allele num: 10398
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.335e1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

FS
type: SiteQuality
SIO_000300: 1.743e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.529e0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 4.565726e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15718
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.581e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

BaseQRankSum
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SIO_000300: -5.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.773e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.329e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15326
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.53021654435082e-5
allele num: 66222
num of homozygotes: 0

African
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e-1

FS
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ReadPosRankSum
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DP
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

African
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South Asian
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East Asian
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Latino
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Other
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European (Finnish)
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ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.520681265206813e-5
allele num: 65760
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East Asian
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African
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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FS
type: SiteQuality
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2860
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.939625260235947e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.474e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.606e0

FS
type: SiteQuality
SIO_000300: 4.266e0

DP
type: SiteQuality
SIO_000300: 4.518712e6

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.073e1

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 249
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52016
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523414886810274e-5
allele num: 65642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.372e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.635e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.24e0

VQSLOD
type: SiteQuality
SIO_000300: -3.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.053e0

DP
type: SiteQuality
SIO_000300: 4.516987e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.87e0

GenotypeQuality
all individuals: 223
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 492
bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524622655892666e-5
allele num: 65590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 7.312079555425563e-4
allele num: 13676
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 4.206e0

QD
type: SiteQuality
SIO_000300: 1.719e1

DP
type: SiteQuality
SIO_000300: 4.515947e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 1471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 384
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variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
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GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
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GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.179e1

VQSLOD
type: SiteQuality
SIO_000300: -1.584e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 4.514838e6

FS
type: SiteQuality
SIO_000300: 4.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.71e-1

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 468
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variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.231e0

VQSLOD
type: SiteQuality
SIO_000300: -3.942e-1

DP
type: SiteQuality
SIO_000300: 4.51337e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: -8.66e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.931e0

GenotypeQuality
all individuals: 493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 7.75e1
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GenotypeQuality
all individuals: 3015
bin: 2.25e1
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GenotypeQuality
all individuals: 1073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 425
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GenotypeQuality
all individuals: 268
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GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52019
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.377832210655236e-4
allele num: 65320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.689922480620155e-5
allele num: 10320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 3.223e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 4.505599e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
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variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
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GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 6.75e1
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GenotypeQuality
all individuals: 52
bin: 5.25e1
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GenotypeQuality
all individuals: 2890
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
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GenotypeQuality
all individuals: 985
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GenotypeQuality
all individuals: 493
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52018
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531909678605349e-5
allele num: 65278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.529e0

QD
type: SiteQuality
SIO_000300: 9.25e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

DP
type: SiteQuality
SIO_000300: 4.504109e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 409
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 519
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GenotypeQuality
all individuals: 47
bin: 4.25e1
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GenotypeQuality
all individuals: 343
bin: 7.75e1
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GenotypeQuality
all individuals: 420
bin: 6.75e1
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GenotypeQuality
all individuals: 491
bin: 9.25e1
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GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52023
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538745614574998e-5
allele num: 64988
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.382e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.25e1

DP
type: SiteQuality
SIO_000300: 4.499165e6

GenotypeQuality
all individuals: 442
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 7.5e0
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GenotypeQuality
all individuals: 407
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 924
bin: 6.25e1
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GenotypeQuality
all individuals: 215
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.75e1
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GenotypeQuality
all individuals: 514
bin: 2.75e1
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GenotypeQuality
all individuals: 393
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variant carriers: 0

GenotypeQuality
all individuals: 52023
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 277
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539266693347289e-5
allele num: 64966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.315e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.028e0

VQSLOD
type: SiteQuality
SIO_000300: -3.076e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

FS
type: SiteQuality
SIO_000300: 1.0586e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 4.498722e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.562e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 6.25e1
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GenotypeQuality
all individuals: 425
bin: 6.75e1
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GenotypeQuality
all individuals: 278
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52024
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540499738115044e-5
allele num: 64914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.889e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

FS
type: SiteQuality
SIO_000300: 5.871e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 1.315e1

DP
type: SiteQuality
SIO_000300: 4.498201e6

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52027
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 354
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 2.75e1
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GenotypeQuality
all individuals: 398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
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GenotypeQuality
all individuals: 221
bin: 3.75e1
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GenotypeQuality
all individuals: 898
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variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.613264427217915e-5
allele num: 11610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.306e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.359e0

DP
type: SiteQuality
SIO_000300: 4.49821e6

QD
type: SiteQuality
SIO_000300: 1.381e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: 8.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 118

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 190

GenotypeQuality
all individuals: 470
bin: 2.75e1
variant carriers: 463

GenotypeQuality
all individuals: 119
bin: 6.75e1
variant carriers: 96

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 55

GenotypeQuality
all individuals: 256
bin: 1.25e1
variant carriers: 253

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 165

GenotypeQuality
all individuals: 115
bin: 6.25e1
variant carriers: 65

GenotypeQuality
all individuals: 170
bin: 8.25e1
variant carriers: 137

GenotypeQuality
all individuals: 531
bin: 3.75e1
variant carriers: 522

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 74

GenotypeQuality
all individuals: 812
bin: 3.25e1
variant carriers: 808

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 148

GenotypeQuality
all individuals: 133
bin: 7.75e1
variant carriers: 113

Other
type: Population
allele count: 697
allele frequency: 8.219339622641509e-1
allele num: 848
num of homozygotes: 287

East Asian
type: Population
allele count: 6115
allele frequency: 7.125378699603822e-1
allele num: 8582
num of homozygotes: 2198

European (Finnish)
type: Population
allele count: 4920
allele frequency: 7.447774750227066e-1
allele num: 6606
num of homozygotes: 1833

Latino
type: Population
allele count: 8577
allele frequency: 7.4453125e-1
allele num: 11520
num of homozygotes: 3196

European (Non-Finnish)
type: Population
allele count: 47977
allele frequency: 7.379033498415823e-1
allele num: 65018
num of homozygotes: 17902

African
type: Population
allele count: 9407
allele frequency: 9.122381691233514e-1
allele num: 10312
num of homozygotes: 4303

South Asian
type: Population
allele count: 11371
allele frequency: 9.409963588215823e-1
allele num: 12084
num of homozygotes: 5355

QD
type: SiteQuality
SIO_000300: 2.785e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.17e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

DP
type: SiteQuality
SIO_000300: 6.80017e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
all individuals: 201
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GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 807
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variant carriers: 0

GenotypeQuality
all individuals: 128
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variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 53609
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.306654257794323e-4
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 6.659792e6

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQ
type: SiteQuality
SIO_000300: 5.902e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.667e0

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeQuality
all individuals: 2175
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21421
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
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variant carriers: 0

GenotypeQuality
all individuals: 447
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 8682
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4399
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 10313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
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variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4186
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.087277330122565e-5
allele num: 64782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.76e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 2.160038e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 1.805e0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

GenotypeQuality
all individuals: 21391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4395
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
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variant carriers: 0

GenotypeQuality
all individuals: 525
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variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 8702
bin: 9.75e1
variant carriers: 62

GenotypeQuality
all individuals: 4184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.474635163307853e-4
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 56
allele frequency: 5.448530842576377e-3
allele num: 10278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.087563295047548e-5
allele num: 64776
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.159745e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

QD
type: SiteQuality
SIO_000300: 1.644e1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

GenotypeQuality
all individuals: 4397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 2794
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GenotypeQuality
all individuals: 4176
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variant carriers: 0

GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 398
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GenotypeQuality
all individuals: 10304
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 21517
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GenotypeQuality
all individuals: 484
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variant carriers: 0

GenotypeQuality
all individuals: 8652
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variant carriers: 1

GenotypeQuality
all individuals: 2705
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.896797153024912e-5
allele num: 11240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 1.6044e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e0

DP
type: SiteQuality
SIO_000300: 2.157531e6

MQ
type: SiteQuality
SIO_000300: 5.924e1

VQSLOD
type: SiteQuality
SIO_000300: -3.862e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.308e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e0

GenotypeQuality
all individuals: 2793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 498
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variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
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GenotypeQuality
all individuals: 4396
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GenotypeQuality
all individuals: 4175
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GenotypeQuality
all individuals: 536
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GenotypeQuality
all individuals: 61
bin: 4.25e1
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GenotypeQuality
all individuals: 21608
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540309910353963e-5
allele num: 64922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.592e0

DP
type: SiteQuality
SIO_000300: 2.162237e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.171e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

FS
type: SiteQuality
SIO_000300: 7.723e0

QD
type: SiteQuality
SIO_000300: 1.307e1

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

GenotypeQuality
all individuals: 10310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539598472718315e-5
allele num: 64952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

MQ
type: SiteQuality
SIO_000300: 5.693e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.645e0

FS
type: SiteQuality
SIO_000300: 1.862e0

QD
type: SiteQuality
SIO_000300: 1.107e1

DP
type: SiteQuality
SIO_000300: 2.163633e6

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4395
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8648
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538130248869474e-5
allele num: 65014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11928
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.165216e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -8.945e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.521e0

GenotypeQuality
all individuals: 4394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21857
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10301
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 517
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8653
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 1721
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.210647508519849e-5
allele num: 65142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 1.140065146579805e-3
allele num: 12280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

QD
type: SiteQuality
SIO_000300: 1.315e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 6.16e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 2.170457e6

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8631
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.993605115907275e-5
allele num: 12510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65198
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.394e1

FS
type: SiteQuality
SIO_000300: 2.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.17139e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
all individuals: 1526
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 505
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variant carriers: 0

GenotypeQuality
all individuals: 4162
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8626
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1721
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65274
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.954102920723226e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 3.943e0

QD
type: SiteQuality
SIO_000300: 1.248e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.326e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 2.17321e6

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 2730
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2735
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 360
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4343
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 9183
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21578
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 11
allele frequency: 1.068999028182702e-3
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 6.899512434454632e-4
allele num: 65222
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.689607229753215e-4
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.131970260223048e-4
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.240887234372576e-3
allele num: 12894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.431e0

FS
type: SiteQuality
SIO_000300: 1.966e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

MQ
type: SiteQuality
SIO_000300: 5.467e1

DP
type: SiteQuality
SIO_000300: 2.179911e6

QD
type: SiteQuality
SIO_000300: 2.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.17e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21578
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.066449970868725e-5
allele num: 65222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.179911e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQ
type: SiteQuality
SIO_000300: 5.467e1

FS
type: SiteQuality
SIO_000300: 1.966e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.17e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.431e0

QD
type: SiteQuality
SIO_000300: 2.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9183
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 202
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.718172983479106e-5
allele num: 10290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.17e-2

MQ
type: SiteQuality
SIO_000300: 5.467e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

FS
type: SiteQuality
SIO_000300: 1.966e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: -2.431e0

DP
type: SiteQuality
SIO_000300: 2.179911e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

QD
type: SiteQuality
SIO_000300: 2.35e0

GenotypeQuality
all individuals: 2735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9183
bin: 9.75e1
variant carriers: 913

GenotypeQuality
all individuals: 233
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 109
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variant carriers: 1

GenotypeQuality
all individuals: 4091
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.066449970868726e-4
allele num: 65222
num of homozygotes: 0

Latino
type: Population
allele count: 67
allele frequency: 5.822036843934654e-3
allele num: 11508
num of homozygotes: 1

South Asian
type: Population
allele count: 11
allele frequency: 8.531099736311463e-4
allele num: 12894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 858
allele frequency: 8.338192419825073e-2
allele num: 10290
num of homozygotes: 36

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.190476190476191e-3
allele num: 840
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.431e0

FS
type: SiteQuality
SIO_000300: 1.966e0

QD
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

MQ
type: SiteQuality
SIO_000300: 5.467e1

DP
type: SiteQuality
SIO_000300: 2.179911e6

GenotypeQuality
all individuals: 569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2645
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 446
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variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.083564600678385e-5
allele num: 64860
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.755545214828603e-5
allele num: 12894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 3.141e1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

FS
type: SiteQuality
SIO_000300: 2.805e0

DP
type: SiteQuality
SIO_000300: 2.098796e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541117001602762e-5
allele num: 64888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13076
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.575e1

DP
type: SiteQuality
SIO_000300: 2.092807e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: -6.45e-1

FS
type: SiteQuality
SIO_000300: 2.445e0

VQSLOD
type: SiteQuality
SIO_000300: -4.121e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 2730
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21738
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variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539645881447267e-5
allele num: 64950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.306e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.459e1

FS
type: SiteQuality
SIO_000300: 2.958e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.29e-1

DP
type: SiteQuality
SIO_000300: 2.145834e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
all individuals: 202
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3989
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variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
all individuals: 472
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GenotypeQuality
all individuals: 8182
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variant carriers: 1

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 245
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2666
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 10063
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537893700787402e-5
allele num: 65024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.635e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

DP
type: SiteQuality
SIO_000300: 2.127107e6

FS
type: SiteQuality
SIO_000300: 3.143e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 282
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10063
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variant carriers: 0

GenotypeQuality
all individuals: 202
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4286
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
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GenotypeQuality
all individuals: 1672
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.613681102362205e-5
allele num: 65024
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

VQSLOD
type: SiteQuality
SIO_000300: 2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

MQ
type: SiteQuality
SIO_000300: 5.917e1

QD
type: SiteQuality
SIO_000300: 1.635e1

FS
type: SiteQuality
SIO_000300: 3.143e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 2.127107e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20776
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.647989452867502e-4
allele num: 6068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.605e1

MQ
type: SiteQuality
SIO_000300: 5.884e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.208e0

QD
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 7.291800000000001e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.156e0

DP
type: SiteQuality
SIO_000300: 2.167117e6

GenotypeQuality
all individuals: 20776
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 546
bin: 1.25e1
variant carriers: 53

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 865
bin: 4.75e1
variant carriers: 26

GenotypeQuality
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variant carriers: 37

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 23

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 992
bin: 9.25e1
variant carriers: 9

East Asian
type: Population
allele count: 9
allele frequency: 1.138663967611336e-3
allele num: 7904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.943968358602505e-4
allele num: 6068
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.714285714285714e-3
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.490942028985507e-3
allele num: 8832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 170
allele frequency: 2.929014472777395e-3
allele num: 58040
num of homozygotes: 0

South Asian
type: Population
allele count: 134
allele frequency: 1.557053218684639e-2
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.626277925028399e-4
allele num: 10564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.156e0

FS
type: SiteQuality
SIO_000300: 7.291800000000001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.605e1

MQ
type: SiteQuality
SIO_000300: 5.884e1

QD
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 2.167117e6

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.208e0

GenotypeQuality
all individuals: 745
bin: 4.25e1
variant carriers: 12

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 479
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GenotypeQuality
all individuals: 813
bin: 4.75e1
variant carriers: 18

GenotypeQuality
all individuals: 499
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GenotypeQuality
all individuals: 21302
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GenotypeQuality
all individuals: 996
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GenotypeQuality
all individuals: 465
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GenotypeQuality
all individuals: 1205
bin: 2.25e1
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GenotypeQuality
all individuals: 920
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GenotypeQuality
all individuals: 2279
bin: 9.75e1
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GenotypeQuality
all individuals: 2006
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1146
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 9554
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 3990
bin: 7.25e1
variant carriers: 7

African
type: Population
allele count: 16
allele frequency: 1.76522506619594e-3
allele num: 9064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.873294346978557e-4
allele num: 6156
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 4.178272980501393e-3
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.498125468632841e-4
allele num: 8002
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.68867216804201e-4
allele num: 10664
num of homozygotes: 0

South Asian
type: Population
allele count: 82
allele frequency: 8.96566805160726e-3
allele num: 9146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 112
allele frequency: 1.890805956038762e-3
allele num: 59234
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.6283e1

VQSLOD
type: SiteQuality
SIO_000300: -2.872e1

DP
type: SiteQuality
SIO_000300: 2.11177e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.36e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.239e0

QD
type: SiteQuality
SIO_000300: 8.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.328e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

GenotypeQuality
all individuals: 3153
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 7477
bin: 2.5e0
variant carriers: 18

GenotypeQuality
all individuals: 1355
bin: 2.25e1
variant carriers: 15

GenotypeQuality
all individuals: 535
bin: 1.25e1
variant carriers: 21

GenotypeQuality
all individuals: 2151
bin: 9.75e1
variant carriers: 49

GenotypeQuality
all individuals: 1034
bin: 5.25e1
variant carriers: 12

GenotypeQuality
all individuals: 517
bin: 7.5e0
variant carriers: 23

GenotypeQuality
all individuals: 9261
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 822
bin: 4.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1036
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 881
bin: 3.25e1
variant carriers: 16

GenotypeQuality
all individuals: 21362
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1873
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 822
bin: 3.75e1
variant carriers: 13

GenotypeQuality
all individuals: 3773
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 946
bin: 9.25e1
variant carriers: 8

African
type: Population
allele count: 19
allele frequency: 2.099911582670203e-3
allele num: 9048
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.52823086574655e-4
allele num: 7970
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.73305566073457e-4
allele num: 10564
num of homozygotes: 0

South Asian
type: Population
allele count: 64
allele frequency: 7.226738934056007e-3
allele num: 8856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 103
allele frequency: 1.753131808278867e-3
allele num: 58752
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.571030640668524e-3
allele num: 718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.918032786885246e-4
allele num: 6100
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.003e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.278e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 2.077199e6

FS
type: SiteQuality
SIO_000300: 6.2147e1

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.386e0

GenotypeQuality
all individuals: 543
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3277
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 456
bin: 1.25e1
variant carriers: 15

GenotypeQuality
all individuals: 21991
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 784
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 891
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 471
bin: 7.5e0
variant carriers: 17

GenotypeQuality
all individuals: 1487
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 930
bin: 3.25e1
variant carriers: 12

GenotypeQuality
all individuals: 2192
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 976
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3956
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 807
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 971
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1919
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 992
bin: 5.75e1
variant carriers: 8

Latino
type: Population
allele count: 5
allele frequency: 4.630487127245786e-4
allele num: 10798
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.93756727664155e-3
allele num: 9290
num of homozygotes: 0

South Asian
type: Population
allele count: 44
allele frequency: 4.548273723382261e-3
allele num: 9674
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.178942165101335e-4
allele num: 8092
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.329787234042553e-3
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 81
allele frequency: 1.344844761746638e-3
allele num: 60230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.816955684007707e-4
allele num: 6228
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

QD
type: SiteQuality
SIO_000300: 9.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.067e1

FS
type: SiteQuality
SIO_000300: 6.2598e1

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.529e0

DP
type: SiteQuality
SIO_000300: 2.059044e6

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4980
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 496
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10748
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.793527963418924e-5
allele num: 11372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-4
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.411900487304436e-5
allele num: 15596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.800078400627205e-5
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.583931791094948e-5
allele num: 65446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.863e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.953e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 2.04712e6

FS
type: SiteQuality
SIO_000300: 4.1826e1

MQ
type: SiteQuality
SIO_000300: 5.831e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.675e0

GenotypeQuality
all individuals: 1092
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7198
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2950
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9024
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.114578689255461e-4
allele num: 8972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.035551e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

QD
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -2.35e0

FS
type: SiteQuality
SIO_000300: 5.677e1

VQSLOD
type: SiteQuality
SIO_000300: -1.881e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.077e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.937e0

MQ
type: SiteQuality
SIO_000300: 5.86e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2950
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 506
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 949
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1002
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1746
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 599
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1101
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3662
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7198
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 987
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2034
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 557
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 940
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1013
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 21525
bin: 6.25e1
variant carriers: 5

South Asian
type: Population
allele count: 21
allele frequency: 2.340615247436469e-3
allele num: 8972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.36986301369863e-3
allele num: 730
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.895016107636915e-4
allele num: 10554
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.767897513187641e-4
allele num: 7962
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.223581757508343e-3
allele num: 8990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.956661587946504e-4
allele num: 59070
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 5.677e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.077e0

QD
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: -1.881e1

MQ
type: SiteQuality
SIO_000300: 5.86e1

DP
type: SiteQuality
SIO_000300: 2.035551e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.937e0

GenotypeQuality
all individuals: 628
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24330
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1400
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65408
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.371861858034918e-5
allele num: 15694
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.606e1

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 1.981145e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

GenotypeQuality
all individuals: 796
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2558
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528864970645792e-5
allele num: 65408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.371861858034918e-5
allele num: 15694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.606e1

DP
type: SiteQuality
SIO_000300: 1.981145e6

QD
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 1592
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4032
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.314725940894166e-5
allele num: 15836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.580572266161786e-5
allele num: 65494
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 8.6e-1

DP
type: SiteQuality
SIO_000300: 1.982261e6

MQ
type: SiteQuality
SIO_000300: 5.847e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -2.424e0

FS
type: SiteQuality
SIO_000300: 3.9999e1

VQSLOD
type: SiteQuality
SIO_000300: -4.879e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.737e0