5-75961020-CACTCTGAGTTTGGGAGTAAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75961020
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75961000
    reference: chr 5
allele count: 1
allele frequency: 8.310617645103384e-6
allele num: 120328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: CACTCTGAGTTTGGGAGTAAT
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

5-75961021-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75961021
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75961019
    reference: chr 5
allele count: 5
allele frequency: 4.154756365086751e-5
allele num: 120344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1185+24_1185+25delCT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2529+24_2529+25delCT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1338+24_1338+25delCT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1167+24_1167+25delCT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1167+24_1167+25delCT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2679+24_2679+25delCT
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23596
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: ACT
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

5-75961030-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75961030
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75961030
    reference: chr 5
allele count: 13
allele frequency: 1.081836792437129e-4
allele num: 120166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2529+30T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1167+30T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2679+30T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1338+30T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1167+30T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1185+30T>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10224
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23606
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

5-75961043-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75961043
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75961043
    reference: chr 5
allele count: 1
allele frequency: 8.345434212942099e-6
allele num: 119826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1167+43T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2529+43T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1338+43T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1167+43T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2679+43T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1185+43T>C
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-75961046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75961046
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75961046
    reference: chr 5
allele count: 1
allele frequency: 8.356592515835743e-6
allele num: 119666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1338+46G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1185+46G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1167+46G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2529+46G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2679+46G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1167+46G>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7913
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4636
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-75961050-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75961050
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75961050
    reference: chr 5
allele count: 1
allele frequency: 8.382370198997468e-6
allele num: 119298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1167+50C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1167+50C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1185+50C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2529+50C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1338+50C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2679+50C>T
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4597
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23595
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4127
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

5-75961051-A-ATGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75961051
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75961055
    reference: chr 5
allele count: 6
allele frequency: 5.024788958863728e-5
allele num: 119408
alternate allele: ATGTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2679+55_2679+58dupTTGT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1167+55_1167+58dupTTGT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1338+55_1338+58dupTTGT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1185+55_1185+58dupTTGT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1167+55_1167+58dupTTGT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2529+55_2529+58dupTTGT
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9681
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3508
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4178
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

5-75961051-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75961051
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75961051
    reference: chr 5
allele count: 1
allele frequency: 8.374648264772879e-6
allele num: 119408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1338+51A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2679+51A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1167+51A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1185+51A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1167+51A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2529+51A>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4605
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4178
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

5-75964455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964455
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964455
    reference: chr 5
allele count: 2
allele frequency: 1.840569840422595e-5
allele num: 108662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-51C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-51C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-51C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-51C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-51C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-51C>T
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4824
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5679
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

5-75964458-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964458
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964458
    reference: chr 5
allele count: 10
allele frequency: 9.180038923365035e-5
allele num: 108932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-48A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-48A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-48A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-48A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-48A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-48A>T
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11586
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13391
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7976
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12232
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5121
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6236
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13323
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5611
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-75964461-GTTTTGTGGGATT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964461
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964449
    reference: chr 5
allele count: 2
allele frequency: 1.820697691355328e-5
allele num: 109848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4477
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: GTTTTGTGGGATT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

5-75964462-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964462
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964462
    reference: chr 5
allele count: 21290
allele frequency: 1.909108843415413e-1
allele num: 111518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-44T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-44T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-44T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-44T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-44T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-44T>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 15935
  bin: 2.25e1
  variant carriers: 3773
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 1.75e1
  variant carriers: 3824
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 3.25e1
  variant carriers: 1542
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 7.5e0
  variant carriers: 550
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 496
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 1.25e1
  variant carriers: 2197
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.25e1
  variant carriers: 495
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 2.75e1
  variant carriers: 2518
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.75e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 3.75e1
  variant carriers: 820
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 575
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 444
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 3.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.25e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 8.25e1
  variant carriers: 215
genotype quality: GenotypeQuality
  all individuals: 13625
  bin: 6.25e1
  variant carriers: 218
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 3.75e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 5.75e1
  variant carriers: 152
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 2.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 4.25e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 1.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 2.75e1
  variant carriers: 43
num of homozygotes: 2435
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

5-75964466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964466
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964466
    reference: chr 5
allele count: 2
allele frequency: 1.778821352971521e-5
allele num: 112434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-40G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-40G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-40G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-40G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-40G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-40G>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11802
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-75964471-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964471
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964472
    reference: chr 5
allele count: 204
allele frequency: 1.802120141342756e-3
allele num: 113200
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-28dupT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-28dupT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-28dupT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-28dupT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-28dupT
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-28dupT
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23877
  bin: 2.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5451
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 7.25e1
  variant carriers: 2
num of homozygotes: 4
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

5-75964475-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964475
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964475
    reference: chr 5
allele count: 1
allele frequency: 8.731946700197342e-6
allele num: 114522
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-31T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-31T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-31T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-31T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-31T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-31T>C
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5819
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3915
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/5-75964484-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964484
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964484
    reference: chr 5
allele count: 10
allele frequency: 8.604222952625148e-5
allele num: 116222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-22C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-22C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-22C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-22C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-22C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-22C>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14287
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29779
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

5-75964484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964484
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964484
    reference: chr 5
allele count: 1
allele frequency: 8.604222952625148e-6
allele num: 116222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-22C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-22C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-22C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-22C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-22C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-22C>T
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14287
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-75964485-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964485
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964485
    reference: chr 5
allele count: 101
allele frequency: 8.65244581512893e-4
allele num: 116730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-21T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-21T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-21T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-21T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-21T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-21T>C
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 30187
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 14386
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 2
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

5-75964489-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964489
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964489
    reference: chr 5
allele count: 3
allele frequency: 2.546862265688671e-5
allele num: 117792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-17T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-17T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-17T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-17T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-17T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-17T>C
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31300
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14838
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39150
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

5-75964492-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964492
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964492
    reference: chr 5
allele count: 1
allele frequency: 8.43668269636379e-6
allele num: 118530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-14T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-14T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-14T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-14T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-14T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-14T>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-75964501-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964501
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964501
    reference: chr 5
allele count: 1
allele frequency: 8.345852111500584e-6
allele num: 119820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186-5T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680-5T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168-5T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339-5T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530-5T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168-5T>C
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41726
  bin: 6.25e1
  variant carriers: 0
hgvs: c.2680-5T>C
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

5-75964506-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964506
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964506
    reference: chr 5
allele count: 1
allele frequency: 8.314763694415805e-6
allele num: 120268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1168A>G
  hgvsp: ENSP00000426027.1:p.Thr390Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2680A>G
  hgvsp: ENSP00000274364.6:p.Thr894Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2530A>G
  hgvsp: ENSP00000421097.1:p.Thr844Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1339A>G
  hgvsp: ENSP00000422661.1:p.Thr447Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1186A>G
  hgvsp: ENSP00000442313.1:p.Thr396Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1168A>G
  hgvsp: ENSP00000379535.3:p.Thr390Ala
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42045
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr894Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

5-75964507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964507
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964507
    reference: chr 5
allele count: 2034
allele frequency: 1.690379629014028e-2
allele num: 120328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2531C>T
  hgvsp: ENSP00000421097.1:p.Thr844Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1169C>T
  hgvsp: ENSP00000426027.1:p.Thr390Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1169C>T
  hgvsp: ENSP00000379535.3:p.Thr390Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1187C>T
  hgvsp: ENSP00000442313.1:p.Thr396Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1340C>T
  hgvsp: ENSP00000422661.1:p.Thr447Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2681C>T
  hgvsp: ENSP00000274364.6:p.Thr894Ile
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 32075
  bin: 2.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.75e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 15442
  bin: 2.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 3.25e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.75e1
  variant carriers: 2
hgvs: p.Thr894Ile
num of homozygotes: 31
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

5-75964512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964512
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964512
    reference: chr 5
allele count: 1
allele frequency: 8.294349888855711e-6
allele num: 120564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2536C>T
  hgvsp: ENSP00000421097.1:p.Pro846Ser
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1192C>T
  hgvsp: ENSP00000442313.1:p.Pro398Ser
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1174C>T
  hgvsp: ENSP00000379535.3:p.Pro392Ser
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1174C>T
  hgvsp: ENSP00000426027.1:p.Pro392Ser
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1345C>T
  hgvsp: ENSP00000422661.1:p.Pro449Ser
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2686C>T
  hgvsp: ENSP00000274364.6:p.Pro896Ser
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41898
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro896Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

5-75964523-GGCTAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964523
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964518
    reference: chr 5
allele count: 2
allele frequency: 1.655409879486161e-5
allele num: 120816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1360_1364delAAGCT
  hgvsp: ENSP00000422661.1:p.Lys454AspfsTer11
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1189_1193delAAGCT
  hgvsp: ENSP00000426027.1:p.Lys397AspfsTer11
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1207_1211delAAGCT
  hgvsp: ENSP00000442313.1:p.Lys403AspfsTer11
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2551_2555delAAGCT
  hgvsp: ENSP00000421097.1:p.Lys851AspfsTer11
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2701_2705delAAGCT
  hgvsp: ENSP00000274364.6:p.Lys901AspfsTer11
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1189_1193delAAGCT
  hgvsp: ENSP00000379535.3:p.Lys397AspfsTer11
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3961
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys901AspfsTer11
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: GGCTAA
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-75964539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964539
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964539
    reference: chr 5
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2713C>T
  hgvsp: ENSP00000274364.6:p.Gln905Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1201C>T
  hgvsp: ENSP00000426027.1:p.Gln401Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1219C>T
  hgvsp: ENSP00000442313.1:p.Gln407Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2563C>T
  hgvsp: ENSP00000421097.1:p.Gln855Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1372C>T
  hgvsp: ENSP00000422661.1:p.Gln458Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1201C>T
  hgvsp: ENSP00000379535.3:p.Gln401Ter
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln905Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

5-75964540-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964540
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964540
    reference: chr 5
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1373A>G
  hgvsp: ENSP00000422661.1:p.Gln458Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1202A>G
  hgvsp: ENSP00000379535.3:p.Gln401Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2714A>G
  hgvsp: ENSP00000274364.6:p.Gln905Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1202A>G
  hgvsp: ENSP00000426027.1:p.Gln401Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2564A>G
  hgvsp: ENSP00000421097.1:p.Gln855Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1220A>G
  hgvsp: ENSP00000442313.1:p.Gln407Arg
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln905Arg
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-75964560-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964560
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964560
    reference: chr 5
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2734A>G
  hgvsp: ENSP00000274364.6:p.Thr912Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1240A>G
  hgvsp: ENSP00000442313.1:p.Thr414Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1222A>G
  hgvsp: ENSP00000426027.1:p.Thr408Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1222A>G
  hgvsp: ENSP00000379535.3:p.Thr408Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1393A>G
  hgvsp: ENSP00000422661.1:p.Thr465Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2584A>G
  hgvsp: ENSP00000421097.1:p.Thr862Ala
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6593
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42066
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr912Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

5-75964567-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964567
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964567
    reference: chr 5
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2591T>G
  hgvsp: ENSP00000421097.1:p.Phe864Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2741T>G
  hgvsp: ENSP00000274364.6:p.Phe914Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1400T>G
  hgvsp: ENSP00000422661.1:p.Phe467Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1247T>G
  hgvsp: ENSP00000442313.1:p.Phe416Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1229T>G
  hgvsp: ENSP00000426027.1:p.Phe410Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1229T>G
  hgvsp: ENSP00000379535.3:p.Phe410Cys
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6579
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe914Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

5-75964575-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964575
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964575
    reference: chr 5
allele count: 2
allele frequency: 1.65264671371201e-5
allele num: 121018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1408A>G
  hgvsp: ENSP00000422661.1:p.Thr470Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1255A>G
  hgvsp: ENSP00000442313.1:p.Thr419Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2749A>G
  hgvsp: ENSP00000274364.6:p.Thr917Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1237A>G
  hgvsp: ENSP00000426027.1:p.Thr413Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2599A>G
  hgvsp: ENSP00000421097.1:p.Thr867Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1237A>G
  hgvsp: ENSP00000379535.3:p.Thr413Ala
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41766
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr917Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-75964586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964586
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964586
    reference: chr 5
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.4C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1248C>T
  hgvsp: ENST00000396234.3:c.1248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1419C>T
  hgvsp: ENST00000514001.1:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2610C>T
  hgvsp: ENST00000505766.1:c.2610C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1248C>T
  hgvsp: ENST00000502745.1:c.1248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2760C>T
  hgvsp: ENST00000274364.6:c.2760C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1266C>T
  hgvsp: ENST00000379730.3:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41742
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe920Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP

5-75964589-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964589
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964589
    reference: chr 5
allele count: 5
allele frequency: 4.133597883597883e-5
allele num: 120960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1422A>G
  hgvsp: ENST00000514001.1:c.1422A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.7A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1269A>G
  hgvsp: ENST00000379730.3:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1251A>G
  hgvsp: ENST00000396234.3:c.1251A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2613A>G
  hgvsp: ENST00000505766.1:c.2613A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2763A>G
  hgvsp: ENST00000274364.6:c.2763A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1251A>G
  hgvsp: ENST00000502745.1:c.1251A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6560
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3961
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr921Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-75964590-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964590
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964590
    reference: chr 5
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1252C>G
  hgvsp: ENSP00000426027.1:p.Leu418Val
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1423C>G
  hgvsp: ENSP00000422661.1:p.Leu475Val
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2764C>G
  hgvsp: ENSP00000274364.6:p.Leu922Val
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1270C>G
  hgvsp: ENSP00000442313.1:p.Leu424Val
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2614C>G
  hgvsp: ENSP00000421097.1:p.Leu872Val
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1252C>G
  hgvsp: ENSP00000379535.3:p.Leu418Val
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.8C>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu922Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

5-75964594-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964594
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964594
    reference: chr 5
allele count: 13
allele frequency: 1.07482430756511e-4
allele num: 120950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1274A>G
  hgvsp: ENSP00000442313.1:p.Tyr425Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2618A>G
  hgvsp: ENSP00000421097.1:p.Tyr873Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1256A>G
  hgvsp: ENSP00000379535.3:p.Tyr419Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.12A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1256A>G
  hgvsp: ENSP00000426027.1:p.Tyr419Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2768A>G
  hgvsp: ENSP00000274364.6:p.Tyr923Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1427A>G
  hgvsp: ENSP00000422661.1:p.Tyr476Cys
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr923Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-75964606-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964606
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964606
    reference: chr 5
allele count: 3
allele frequency: 2.481964392084188e-5
allele num: 120872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2630C>G
  hgvsp: ENSP00000421097.1:p.Ser877Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1268C>G
  hgvsp: ENSP00000379535.3:p.Ser423Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1439C>G
  hgvsp: ENSP00000422661.1:p.Ser480Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2780C>G
  hgvsp: ENSP00000274364.6:p.Ser927Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1268C>G
  hgvsp: ENSP00000426027.1:p.Ser423Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1286C>G
  hgvsp: ENSP00000442313.1:p.Ser429Cys
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.24C>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6535
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser927Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

5-75964614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964614
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964614
    reference: chr 5
allele count: 1
allele frequency: 8.276912380605539e-6
allele num: 120818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1447C>T
  hgvsp: ENSP00000422661.1:p.Arg483Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1294C>T
  hgvsp: ENSP00000442313.1:p.Arg432Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1276C>T
  hgvsp: ENSP00000379535.3:p.Arg426Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2788C>T
  hgvsp: ENSP00000274364.6:p.Arg930Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.32C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2638C>T
  hgvsp: ENSP00000421097.1:p.Arg880Ter
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1276C>T
  hgvsp: ENSP00000426027.1:p.Arg426Ter
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg930Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

5-75964615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964615
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964615
    reference: chr 5
allele count: 2
allele frequency: 1.655546909921693e-5
allele num: 120806
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2789G>A
  hgvsp: ENSP00000274364.6:p.Arg930Gln
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1295G>A
  hgvsp: ENSP00000442313.1:p.Arg432Gln
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1277G>A
  hgvsp: ENSP00000426027.1:p.Arg426Gln
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1277G>A
  hgvsp: ENSP00000379535.3:p.Arg426Gln
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.33G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2639G>A
  hgvsp: ENSP00000421097.1:p.Arg880Gln
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1448G>A
  hgvsp: ENSP00000422661.1:p.Arg483Gln
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41724
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg930Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/5-75964619-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964619
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964619
    reference: chr 5
allele count: 1
allele frequency: 8.279242283746192e-6
allele num: 120784
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1299A>C
  hgvsp: ENSP00000442313.1:p.Glu433Asp
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.37A>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1281A>C
  hgvsp: ENSP00000426027.1:p.Glu427Asp
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2793A>C
  hgvsp: ENSP00000274364.6:p.Glu931Asp
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1452A>C
  hgvsp: ENSP00000422661.1:p.Glu484Asp
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2643A>C
  hgvsp: ENSP00000421097.1:p.Glu881Asp
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1281A>C
  hgvsp: ENSP00000379535.3:p.Glu427Asp
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu931Asp
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

5-75964621-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964621
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964621
    reference: chr 5
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2645A>G
  hgvsp: ENSP00000421097.1:p.Glu882Gly
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1283A>G
  hgvsp: ENSP00000426027.1:p.Glu428Gly
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.39A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1454A>G
  hgvsp: ENSP00000422661.1:p.Glu485Gly
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1301A>G
  hgvsp: ENSP00000442313.1:p.Glu434Gly
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1283A>G
  hgvsp: ENSP00000379535.3:p.Glu428Gly
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2795A>G
  hgvsp: ENSP00000274364.6:p.Glu932Gly
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu932Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-75964622-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964622
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964622
    reference: chr 5
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.40A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1284A>G
  hgvsp: ENST00000396234.3:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1302A>G
  hgvsp: ENST00000379730.3:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2646A>G
  hgvsp: ENST00000505766.1:c.2646A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1284A>G
  hgvsp: ENST00000502745.1:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1455A>G
  hgvsp: ENST00000514001.1:c.1455A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2796A>G
  hgvsp: ENST00000274364.6:c.2796A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu932Glu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-75964669-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964669
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964669
    reference: chr 5
allele count: 1
allele frequency: 8.421478137842754e-6
allele num: 118744
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843A>T
  hgvsp: ENSP00000274364.6:p.Lys948Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349A>T
  hgvsp: ENSP00000442313.1:p.Lys450Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693A>T
  hgvsp: ENSP00000421097.1:p.Lys898Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331A>T
  hgvsp: ENSP00000426027.1:p.Lys444Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331A>T
  hgvsp: ENSP00000379535.3:p.Lys444Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502A>T
  hgvsp: ENSP00000422661.1:p.Lys501Ile
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys948Ile
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

5-75964670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964670
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964670
    reference: chr 5
allele count: 2
allele frequency: 1.685857342751656e-5
allele num: 118634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+1G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+1G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+1G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+1G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+1G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+1G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+1G>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15693
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36814
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.25e1
  variant carriers: 0
hgvs: c.2843+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-75964685-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964685
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964685
    reference: chr 5
allele count: 1
allele frequency: 8.50311213904289e-6
allele num: 117604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+16T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+16T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+16T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+16T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+16T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+16T>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+16T>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13624
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

5-75964686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964686
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964686
    reference: chr 5
allele count: 46
allele frequency: 3.915626755647866e-4
allele num: 117478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+17G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+17G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+17G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+17G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+17G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+17G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+17G>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13416
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24349
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/5-75964693-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964693
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964693
    reference: chr 5
allele count: 56
allele frequency: 4.783462885453147e-4
allele num: 117070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+24A>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+24A>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+24A>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+24A>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+24A>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+24A>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+24A>C
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6732
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23136
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26399
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

5-75964698-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964698
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964698
    reference: chr 5
allele count: 1
allele frequency: 8.588556607176597e-6
allele num: 116434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+29A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+29A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+29A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+29A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+29A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+29A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+29A>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3821
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

5-75964702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964702
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964702
    reference: chr 5
allele count: 35528
allele frequency: 3.077029672099912e-1
allele num: 115462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+33G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+33G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+33G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+33G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+33G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+33G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+33G>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 3.25e1
  variant carriers: 3734
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 341
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 7.5e0
  variant carriers: 578
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 2.75e1
  variant carriers: 5123
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 3.75e1
  variant carriers: 2413
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 1.25e1
  variant carriers: 2682
genotype depth: GenotypeDepth
  all individuals: 16285
  bin: 2.25e1
  variant carriers: 6017
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 526
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 4.25e1
  variant carriers: 1429
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 1.75e1
  variant carriers: 5115
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.75e1
  variant carriers: 855
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 3.25e1
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 3.75e1
  variant carriers: 323
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 2.75e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 2.25e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.5e0
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 7.25e1
  variant carriers: 302
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.5e0
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 8.25e1
  variant carriers: 491
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 4.75e1
  variant carriers: 456
num of homozygotes: 5877
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

5-75964703-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964703
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964703
    reference: chr 5
allele count: 11
allele frequency: 9.685656423351237e-5
allele num: 113570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+34T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+34T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+34T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+34T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+34T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+34T>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+34T>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12103
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9492
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5873
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7143
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

5-75964707-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964707
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964707
    reference: chr 5
allele count: 1
allele frequency: 8.864462370357237e-6
allele num: 112810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+38T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+38T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+38T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+38T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+38T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+38T>C
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+38T>C
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12976
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7024
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

5-75964713-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964713
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964713
    reference: chr 5
allele count: 19
allele frequency: 1.701106614618773e-4
allele num: 111692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+44C>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+44C>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+44C>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+44C>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+44C>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+44C>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+44C>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12093
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12844
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14579
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

5-75964721-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75964721
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75964721
    reference: chr 5
allele count: 1
allele frequency: 9.059119815918686e-6
allele num: 110386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2843+52A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1349+52A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1502+52A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.87+52A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1331+52A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2693+52A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1331+52A>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5792
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

5-75967534-A-AAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967534
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967536
    reference: chr 5
allele count: 1
allele frequency: 1.130173368594742e-5
allele num: 88482
alternate allele: AAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1332-50_1332-49insAG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2844-50_2844-49insAG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1350-50_1350-49insAG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2694-50_2694-49insAG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1332-50_1332-49insAG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.88-50_88-49insAG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1503-50_1503-49insAG
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

5-75967534-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967534
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967535
    reference: chr 5
allele count: 2
allele frequency: 2.260346737189485e-5
allele num: 88482
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1332-50_1332-49insG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1350-50_1350-49insG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1332-50_1332-49insG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2694-50_2694-49insG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1503-50_1503-49insG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.88-50_88-49insG
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2844-50_2844-49insG
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18070
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3753
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6148
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

5-75967534-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967534
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967534
    reference: chr 5
allele count: 66
allele frequency: 7.4591442327253e-4
allele num: 88482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1332-50A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1350-50A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1503-50A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.88-50A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1332-50A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2694-50A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2844-50A>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18070
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13538
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 6148
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 9.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6571
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3753
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/5-75967543-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967543
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967543
    reference: chr 5
allele count: 10
allele frequency: 1.001381907031704e-4
allele num: 99862
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2844-41C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1332-41C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1503-41C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2694-41C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1332-41C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1350-41C>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.88-41C>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29082
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

5-75967544-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967544
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967544
    reference: chr 5
allele count: 1
allele frequency: 9.838839804010311e-6
allele num: 101638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1350-40A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2844-40A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2694-40A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1503-40A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1332-40A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.88-40A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1332-40A>T
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31218
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9516
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-75967562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967562
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967562
    reference: chr 5
allele count: 2
allele frequency: 1.719956657092241e-5
allele num: 116282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1332-22G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2694-22G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1503-22G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.88-22G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2844-22G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1332-22G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1350-22G>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13492
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

5-75967572-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967572
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967572
    reference: chr 5
allele count: 1
allele frequency: 8.361763328650746e-6
allele num: 119592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.88-12G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1332-12G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2844-12G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1332-12G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1350-12G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1503-12G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2694-12G>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

5-75967574-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967574
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967573
    reference: chr 5
allele count: 1
allele frequency: 8.34599142032082e-6
allele num: 119818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2694-9delC
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2844-9delC
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.88-9delC
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1332-9delC
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1332-9delC
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1350-9delC
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1503-9delC
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5636
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: GC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

5-75967598-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967598
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967598
    reference: chr 5
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.102A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2708A>G
  hgvsp: ENSP00000421097.1:p.Gln903Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2858A>G
  hgvsp: ENSP00000274364.6:p.Gln953Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1364A>G
  hgvsp: ENSP00000442313.1:p.Gln455Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1346A>G
  hgvsp: ENSP00000426027.1:p.Gln449Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1517A>G
  hgvsp: ENSP00000422661.1:p.Gln506Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1346A>G
  hgvsp: ENSP00000379535.3:p.Gln449Arg
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln953Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

5-75967602-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967602
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967602
    reference: chr 5
allele count: 1
allele frequency: 8.256547442121603e-6
allele num: 121116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1350A>T
  hgvsp: ENST00000396234.3:c.1350A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.106A>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1521A>T
  hgvsp: ENST00000514001.1:c.1521A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1368A>T
  hgvsp: ENST00000379730.3:c.1368A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1350A>T
  hgvsp: ENST00000502745.1:c.1350A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2862A>T
  hgvsp: ENST00000274364.6:c.2862A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2712A>T
  hgvsp: ENST00000505766.1:c.2712A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5639
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val954Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

5-75967604-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967604
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967604
    reference: chr 5
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000422661
  ensembl transcript: ENST00000514001
  gene symbol: IQGAP2
  hgvsc: ENST00000514001.1:c.1523A>G
  hgvsp: ENSP00000422661.1:p.Gln508Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1352A>G
  hgvsp: ENSP00000426027.1:p.Gln451Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.108A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1370A>G
  hgvsp: ENSP00000442313.1:p.Gln457Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1352A>G
  hgvsp: ENSP00000379535.3:p.Gln451Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2864A>G
  hgvsp: ENSP00000274364.6:p.Gln955Arg
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2714A>G
  hgvsp: ENSP00000421097.1:p.Gln905Arg
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln955Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-75967625-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967625
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967625
    reference: chr 5
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1373C>T
  hgvsp: ENSP00000379535.3:p.Pro458Leu
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1391C>T
  hgvsp: ENSP00000442313.1:p.Pro464Leu
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1373C>T
  hgvsp: ENSP00000426027.1:p.Pro458Leu
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2735C>T
  hgvsp: ENSP00000421097.1:p.Pro912Leu
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.129C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2885C>T
  hgvsp: ENSP00000274364.6:p.Pro962Leu
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro962Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-75967627-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967627
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967627
    reference: chr 5
allele count: 2
allele frequency: 1.64883180266781e-5
allele num: 121298
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2887A>G
  hgvsp: ENSP00000274364.6:p.Thr963Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2737A>G
  hgvsp: ENSP00000421097.1:p.Thr913Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1375A>G
  hgvsp: ENSP00000426027.1:p.Thr459Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.131A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1393A>G
  hgvsp: ENSP00000442313.1:p.Thr465Ala
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1375A>G
  hgvsp: ENSP00000379535.3:p.Thr459Ala
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5636
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr963Ala
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

5-75967645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967645
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967645
    reference: chr 5
allele count: 5
allele frequency: 4.120041530018623e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.149G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2755G>A
  hgvsp: ENSP00000421097.1:p.Val919Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1411G>A
  hgvsp: ENSP00000442313.1:p.Val471Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2905G>A
  hgvsp: ENSP00000274364.6:p.Val969Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1393G>A
  hgvsp: ENSP00000426027.1:p.Val465Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1393G>A
  hgvsp: ENSP00000379535.3:p.Val465Ile
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val969Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-75967655-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967655
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967655
    reference: chr 5
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.159A>G
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1403A>G
  hgvsp: ENSP00000426027.1:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1421A>G
  hgvsp: ENSP00000442313.1:p.Asn474Ser
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2765A>G
  hgvsp: ENSP00000421097.1:p.Asn922Ser
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1403A>G
  hgvsp: ENSP00000379535.3:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2915A>G
  hgvsp: ENSP00000274364.6:p.Asn972Ser
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5627
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn972Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/5-75967665-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967665
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967665
    reference: chr 5
allele count: 107
allele frequency: 8.8176154530771e-4
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2775C>A
  hgvsp: ENST00000505766.1:c.2775C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1413C>A
  hgvsp: ENST00000502745.1:c.1413C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1413C>A
  hgvsp: ENST00000396234.3:c.1413C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1431C>A
  hgvsp: ENST00000379730.3:c.1431C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2925C>A
  hgvsp: ENST00000274364.6:c.2925C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.169C>A
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 40346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 9.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala975Ala
num of homozygotes: 2
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

5-75967665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967665
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967665
    reference: chr 5
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1431C>T
  hgvsp: ENST00000379730.3:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2925C>T
  hgvsp: ENST00000274364.6:c.2925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1413C>T
  hgvsp: ENST00000396234.3:c.1413C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2775C>T
  hgvsp: ENST00000505766.1:c.2775C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1413C>T
  hgvsp: ENST00000502745.1:c.1413C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.169C>T
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala975Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-75967667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967667
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967667
    reference: chr 5
allele count: 4
allele frequency: 3.296250515039143e-5
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1415G>A
  hgvsp: ENSP00000426027.1:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2927G>A
  hgvsp: ENSP00000274364.6:p.Arg976Gln
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.171G>A
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2777G>A
  hgvsp: ENSP00000421097.1:p.Arg926Gln
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1433G>A
  hgvsp: ENSP00000442313.1:p.Arg478Gln
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1415G>A
  hgvsp: ENSP00000379535.3:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50663
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg976Gln
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

5-75967677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967677
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967677
    reference: chr 5
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2787C>T
  hgvsp: ENST00000505766.1:c.2787C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2937C>T
  hgvsp: ENST00000274364.6:c.2937C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1425C>T
  hgvsp: ENST00000396234.3:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.181C>T
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1425C>T
  hgvsp: ENST00000502745.1:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1443C>T
  hgvsp: ENST00000379730.3:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn979Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

5-75967679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967679
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967679
    reference: chr 5
allele count: 2
allele frequency: 1.648152421135907e-5
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2939C>T
  hgvsp: ENSP00000274364.6:p.Thr980Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1427C>T
  hgvsp: ENSP00000379535.3:p.Thr476Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1445C>T
  hgvsp: ENSP00000442313.1:p.Thr482Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1427C>T
  hgvsp: ENSP00000426027.1:p.Thr476Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2789C>T
  hgvsp: ENSP00000421097.1:p.Thr930Ile
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.183C>T
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr980Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

5-75967680-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75967680
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 75967680
    reference: chr 5
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000379535
  ensembl transcript: ENST00000396234
  gene symbol: IQGAP2
  hgvsc: ENST00000396234.3:c.1428C>G
  hgvsp: ENST00000396234.3:c.1428C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000421097
  ensembl transcript: ENST00000505766
  gene symbol: IQGAP2
  hgvsc: ENST00000505766.1:c.2790C>G
  hgvsp: ENST00000505766.1:c.2790C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000274364
  ensembl transcript: ENST00000274364
  gene symbol: IQGAP2
  hgvsc: ENST00000274364.6:c.2940C>G
  hgvsp: ENST00000274364.6:c.2940C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000426027
  ensembl transcript: ENST00000502745
  gene symbol: IQGAP2
  hgvsc: ENST00000502745.1:c.1428C>G
  hgvsp: ENST00000502745.1:c.1428C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145703
  ensembl protein: ENSP00000442313
  ensembl transcript: ENST00000379730
  gene symbol: IQGAP2
  hgvsc: ENST00000379730.3:c.1446C>G
  hgvsp: ENST00000379730.3:c.1446C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6111
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145703
  ensembl transcript: ENST00000512383
  gene symbol: IQGAP2
  hgvsc: ENST00000512383.1:n.184C>G
  variant of: http://identifiers.org/hgnc/6111
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5605
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr980Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.321e0

VQSLOD
type: SiteQuality
SIO_000300: -7.967e-1

DP
type: SiteQuality
SIO_000300: 2.301753e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 5.279e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQ
type: SiteQuality
SIO_000300: 5.384e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

GenotypeQuality
all individuals: 2887
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.02028837181301e-5
allele num: 66442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.974e0

DP
type: SiteQuality
SIO_000300: 2.300025e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

QD
type: SiteQuality
SIO_000300: 1.653e1

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 8.265513733468973e-4
allele num: 15728
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

DP
type: SiteQuality
SIO_000300: 2.284488e6

FS
type: SiteQuality
SIO_000300: 4.114e0

QD
type: SiteQuality
SIO_000300: 1.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

GenotypeQuality
all individuals: 9691
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23595
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4678
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50793172085168e-5
allele num: 66316
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.27555e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

QD
type: SiteQuality
SIO_000300: 1.756e1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
all individuals: 23595
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3507
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508750754375377e-5
allele num: 66280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.274465e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.694e0

MQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

FS
type: SiteQuality
SIO_000300: 2.087e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.412e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8865
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variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.781e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.489e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.616e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e0

DP
type: SiteQuality
SIO_000300: 2.274247e6

VQSLOD
type: SiteQuality
SIO_000300: -7.242e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

GenotypeQuality
all individuals: 4605
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23601
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1327
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.971880083662561e-4
allele num: 8606
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15180
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.416e1

MQ
type: SiteQuality
SIO_000300: 5.488e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.869e0

FS
type: SiteQuality
SIO_000300: 1.0083e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 2.274461e6

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23601
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2391
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.587615283267457e-5
allele num: 15180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.488e1

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 2.274461e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.869e0

QD
type: SiteQuality
SIO_000300: 1.416e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

FS
type: SiteQuality
SIO_000300: 1.0083e1

GenotypeQuality
all individuals: 606
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4781
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6219
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 718
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.416014371872192e-5
allele num: 15586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.707941929974381e-5
allele num: 58550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.372573e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.52e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
all individuals: 2982
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3834
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4780
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.703925845147219e-4
allele num: 58688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 1.384534e6

QD
type: SiteQuality
SIO_000300: 1.197e1

VQSLOD
type: SiteQuality
SIO_000300: 7.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 4088
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6237
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4664
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5413
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.376667229444538e-5
allele num: 59230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.55e-1

FS
type: SiteQuality
SIO_000300: 2.438e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.899e0

QD
type: SiteQuality
SIO_000300: 3.54e0

DP
type: SiteQuality
SIO_000300: 1.406437e6

MQ
type: SiteQuality
SIO_000300: 5.185e1

GenotypeQuality
all individuals: 19213
bin: 9.75e1
variant carriers: 16979

GenotypeQuality
all individuals: 544
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variant carriers: 167

GenotypeQuality
all individuals: 2540
bin: 4.75e1
variant carriers: 204

GenotypeQuality
all individuals: 478
bin: 8.75e1
variant carriers: 151

GenotypeQuality
all individuals: 1306
bin: 7.75e1
variant carriers: 219

GenotypeQuality
all individuals: 3129
bin: 6.75e1
variant carriers: 224

GenotypeQuality
all individuals: 1357
bin: 5.25e1
variant carriers: 243

Other
type: Population
allele count: 143
allele frequency: 1.647465437788019e-1
allele num: 868
num of homozygotes: 15

European (Finnish)
type: Population
allele count: 829
allele frequency: 1.310464748656339e-1
allele num: 6326
num of homozygotes: 51

East Asian
type: Population
allele count: 587
allele frequency: 7.394809775762157e-2
allele num: 7938
num of homozygotes: 16

South Asian
type: Population
allele count: 5894
allele frequency: 3.685592796398199e-1
allele num: 15992
num of homozygotes: 1127

African
type: Population
allele count: 1263
allele frequency: 1.383957922419461e-1
allele num: 9126
num of homozygotes: 93

Latino
type: Population
allele count: 1260
allele frequency: 1.151315789473684e-1
allele num: 10944
num of homozygotes: 73

European (Non-Finnish)
type: Population
allele count: 11314
allele frequency: 1.875538757376832e-1
allele num: 60324
num of homozygotes: 1060

VQSLOD
type: SiteQuality
SIO_000300: 6.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

DP
type: SiteQuality
SIO_000300: 1.48631e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.69e1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

GenotypeQuality
all individuals: 549
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24613
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
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variant carriers: 2

GenotypeQuality
all individuals: 1795
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5188
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6411737674785e-5
allele num: 60932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.233636703652911e-5
allele num: 16042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.85e-1

FS
type: SiteQuality
SIO_000300: 2.202e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.691e0

QD
type: SiteQuality
SIO_000300: 7.97e0

DP
type: SiteQuality
SIO_000300: 1.42231e6

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

GenotypeQuality
all individuals: 216
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2924
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4072
bin: 9.75e1
variant carriers: 186

GenotypeQuality
all individuals: 687
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 28713
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3664
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 6
allele frequency: 6.896551724137931e-3
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.115816542430259e-4
allele num: 61442
num of homozygotes: 1

African
type: Population
allele count: 168
allele frequency: 1.812297734627832e-2
allele num: 9270
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.364089775561097e-4
allele num: 16040
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.236705416769726e-4
allele num: 8086
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 8.124210146235783e-4
allele num: 11078
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

DP
type: SiteQuality
SIO_000300: 1.470685e6

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.037e1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.45e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
all individuals: 707
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31677
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62278
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.188884762965714e-5
allele num: 16158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.495671e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.878e-1

QD
type: SiteQuality
SIO_000300: 1.787e1

GenotypeQuality
all individuals: 1120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3924
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 5942
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.574654363367241e-4
allele num: 63506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.764e0

VQSLOD
type: SiteQuality
SIO_000300: -1.701e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQ
type: SiteQuality
SIO_000300: 5.892e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.009e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.076e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

QD
type: SiteQuality
SIO_000300: 7.33e0

DP
type: SiteQuality
SIO_000300: 1.549998e6

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 773
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5942
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 338
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.574654363367241e-5
allele num: 63506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.549998e6

FS
type: SiteQuality
SIO_000300: 3.764e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQ
type: SiteQuality
SIO_000300: 5.892e1

VQSLOD
type: SiteQuality
SIO_000300: -1.701e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

QD
type: SiteQuality
SIO_000300: 7.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.009e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.076e0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3989
bin: 9.75e1
variant carriers: 98

GenotypeQuality
all individuals: 37443
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 99
allele frequency: 6.084818684695759e-3
allele num: 16270
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.3872045834328e-4
allele num: 8378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

DP
type: SiteQuality
SIO_000300: 1.556672e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.474e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3902
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.646984107314353e-5
allele num: 64558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

FS
type: SiteQuality
SIO_000300: 5.4e0

DP
type: SiteQuality
SIO_000300: 1.572377e6

QD
type: SiteQuality
SIO_000300: 1.456e1

GenotypeQuality
all individuals: 1521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.748906386701662e-5
allele num: 11430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.414e0

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 4.017e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -5.895e-1

DP
type: SiteQuality
SIO_000300: 1.585994e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007455168245013e-4
allele num: 9926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.338e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.851e1

VQSLOD
type: SiteQuality
SIO_000300: -8.545e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.603395e6

GenotypeQuality
all individuals: 2018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3915
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66146
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.557e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.60848e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 2.951e0

QD
type: SiteQuality
SIO_000300: 8.41e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e-1

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40883
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5632
bin: 9.75e1
variant carriers: 1982

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1446
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6222
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 533
bin: 2.25e1
variant carriers: 1

South Asian
type: Population
allele count: 121
allele frequency: 7.347583191644401e-3
allele num: 16468
num of homozygotes: 4

Latino
type: Population
allele count: 69
allele frequency: 5.989583333333334e-3
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 367
allele frequency: 5.567354368932039e-2
allele num: 6592
num of homozygotes: 7

Other
type: Population
allele count: 28
allele frequency: 3.104212860310421e-2
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1413
allele frequency: 2.134828065510365e-2
allele num: 66188
num of homozygotes: 20

African
type: Population
allele count: 36
allele frequency: 3.581376840429765e-3
allele num: 10052
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

FS
type: SiteQuality
SIO_000300: 3.163e0

DP
type: SiteQuality
SIO_000300: 1.671206e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.258e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 9.25e1
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GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508022680661117e-5
allele num: 66312
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.757e0

VQSLOD
type: SiteQuality
SIO_000300: -1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

QD
type: SiteQuality
SIO_000300: 9.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.63e-1

MQ
type: SiteQuality
SIO_000300: 5.88e1

FS
type: SiteQuality
SIO_000300: 4.583e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

DP
type: SiteQuality
SIO_000300: 1.623052e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.626032e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.897e-1

QD
type: SiteQuality
SIO_000300: 5.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 1.1799e1

MQRankSum
type: SiteQuality
SIO_000300: -4.123e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

MQ
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SIO_000300: 5.331e1

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 1.628592e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.919e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.43e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

QD
type: SiteQuality
SIO_000300: 7.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.628677e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.401e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.789e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 740
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.399e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.16e-1

FS
type: SiteQuality
SIO_000300: 5.738e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 1.629687e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

VQSLOD
type: SiteQuality
SIO_000300: -1.652e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
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GenotypeQuality
all individuals: 3957
bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 6.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

DP
type: SiteQuality
SIO_000300: 1.629108e6

VQSLOD
type: SiteQuality
SIO_000300: -1.268e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.27e-1

QD
type: SiteQuality
SIO_000300: 2.537e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21256214380987e-4
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.628371e6

FS
type: SiteQuality
SIO_000300: 3.545e0

QD
type: SiteQuality
SIO_000300: 1.238e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.69e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.303e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 5.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

DP
type: SiteQuality
SIO_000300: 1.627955e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.906413485758574e-4
allele num: 10322
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8614
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.131e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.85201358563804e-4
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.804504295333178e-4
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 5.86e-1

DP
type: SiteQuality
SIO_000300: 1.628396e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.385e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 2051
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
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GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3951
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.482702577199907e-4
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.627098e6

VQSLOD
type: SiteQuality
SIO_000300: 3.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

FS
type: SiteQuality
SIO_000300: 6.434e0

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.292e0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6515
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

DP
type: SiteQuality
SIO_000300: 1.626493e6

QD
type: SiteQuality
SIO_000300: 1.104e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 737
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GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009962977455377e-5
allele num: 66446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.626297e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

FS
type: SiteQuality
SIO_000300: 1.4079e1

VQSLOD
type: SiteQuality
SIO_000300: -9.304e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 41729
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variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505434618974498e-5
allele num: 66426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.625492e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.177e0

FS
type: SiteQuality
SIO_000300: 5.301e0

VQSLOD
type: SiteQuality
SIO_000300: -2.676e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.81e-1

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.027e0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3947
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.526e1

FS
type: SiteQuality
SIO_000300: 9.673e0

VQSLOD
type: SiteQuality
SIO_000300: -8.85e-1

DP
type: SiteQuality
SIO_000300: 1.625182e6

MQRankSum
type: SiteQuality
SIO_000300: -1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 6511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3947
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41667
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.62489e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.279e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

GenotypeQuality
all individuals: 293
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 2484
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variant carriers: 0

GenotypeQuality
all individuals: 184
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GenotypeQuality
all individuals: 3939
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37149
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173158141717503e-4
allele num: 8524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.373e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.149e0

DP
type: SiteQuality
SIO_000300: 1.568838e6

GenotypeQuality
all individuals: 842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532567049808429e-5
allele num: 65250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.155361319709468e-5
allele num: 16246
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

FS
type: SiteQuality
SIO_000300: 1.195e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.565315e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.618e0

QD
type: SiteQuality
SIO_000300: 2.769e1

GenotypeQuality
all individuals: 829
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30963
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variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.22975330176925e-5
allele num: 16052
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.943e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-1

QD
type: SiteQuality
SIO_000300: 1.002e1

MQRankSum
type: SiteQuality
SIO_000300: -9.03e-1

DP
type: SiteQuality
SIO_000300: 1.500742e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-2

GenotypeQuality
all individuals: 2141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3979
bin: 9.75e1
variant carriers: 45

GenotypeQuality
all individuals: 1639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.807468733485996e-5
allele num: 11354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 44
allele frequency: 5.213270142180095e-3
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54669471339747e-5
allele num: 64654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16042
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.659e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.643e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

QD
type: SiteQuality
SIO_000300: 1.085e1

DP
type: SiteQuality
SIO_000300: 1.496467e6

GenotypeQuality
all individuals: 323
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
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GenotypeQuality
all individuals: 1426
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3989
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 2013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 44
allele frequency: 2.756201453269857e-3
allele num: 15964
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.432494279176201e-3
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.396084757856855e-4
allele num: 64466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

DP
type: SiteQuality
SIO_000300: 1.463558e6

QD
type: SiteQuality
SIO_000300: 1.685e1

GenotypeQuality
all individuals: 3935
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2926
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559429872438636e-5
allele num: 64126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.603e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 1.443983e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

MQRankSum
type: SiteQuality
SIO_000300: -4.38e-1

QD
type: SiteQuality
SIO_000300: 1.937e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

GenotypeQuality
all individuals: 2453
bin: 6.75e1
variant carriers: 504

GenotypeQuality
all individuals: 1007
bin: 4.25e1
variant carriers: 239

GenotypeQuality
all individuals: 26361
bin: 9.75e1
variant carriers: 24936

GenotypeQuality
all individuals: 832
bin: 5.25e1
variant carriers: 506

GenotypeQuality
all individuals: 247
bin: 1.75e1
variant carriers: 82

GenotypeQuality
all individuals: 1227
bin: 7.75e1
variant carriers: 502

GenotypeQuality
all individuals: 12757
bin: 6.25e1
variant carriers: 525

GenotypeQuality
all individuals: 595
bin: 5.75e1
variant carriers: 298

GenotypeQuality
all individuals: 493
bin: 8.75e1
variant carriers: 267

GenotypeQuality
all individuals: 623
bin: 9.25e1
variant carriers: 373

East Asian
type: Population
allele count: 603
allele frequency: 7.2598121839634e-2
allele num: 8306
num of homozygotes: 19

European (Finnish)
type: Population
allele count: 1839
allele frequency: 2.854703508227259e-1
allele num: 6442
num of homozygotes: 251

European (Non-Finnish)
type: Population
allele count: 20836
allele frequency: 3.284570275553313e-1
allele num: 63436
num of homozygotes: 3338

South Asian
type: Population
allele count: 7411
allele frequency: 4.703007995938571e-1
allele num: 15758
num of homozygotes: 1739

Latino
type: Population
allele count: 2207
allele frequency: 1.967023172905526e-1
allele num: 11220
num of homozygotes: 208

African
type: Population
allele count: 2374
allele frequency: 2.514830508474576e-1
allele num: 9440
num of homozygotes: 284

Other
type: Population
allele count: 258
allele frequency: 3.0e-1
allele num: 860
num of homozygotes: 38

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.372e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.43e-2

QD
type: SiteQuality
SIO_000300: 1.784e1

VQSLOD
type: SiteQuality
SIO_000300: 6.54e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

DP
type: SiteQuality
SIO_000300: 1.546205e6

GenotypeQuality
all individuals: 3219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.080613788631943e-3
allele num: 9254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.952551477170994e-5
allele num: 11170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62392
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.736e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.362178e6

GenotypeQuality
all individuals: 860
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17228
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6365
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
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variant carriers: 0

GenotypeQuality
all individuals: 378
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variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.613892385655725e-5
allele num: 61962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15030
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

QD
type: SiteQuality
SIO_000300: 1.086e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.330708e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 2.291e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1078
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6401
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3730
bin: 9.75e1
variant carriers: 19

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61352
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 2.308626974483597e-3
allele num: 8230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.307674e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.427e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.57e0

GenotypeQuality
all individuals: 1194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6881
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4972
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6733
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3715
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.874742197167606e-5
allele num: 14546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.264e0

QD
type: SiteQuality
SIO_000300: 1.642e1

VQSLOD
type: SiteQuality
SIO_000300: -1.468e0

DP
type: SiteQuality
SIO_000300: 1.294659e6

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.992e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 5848
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7874
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
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variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6571
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50790
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.328021248339973e-4
allele num: 7530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

FS
type: SiteQuality
SIO_000300: 8.35e-1

QD
type: SiteQuality
SIO_000300: 1.144e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 9.96098e5

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.816e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.74e-2

GenotypeQuality
all individuals: 2899
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7874
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6571
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.656042496679947e-4
allele num: 7530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 5.816e1

DP
type: SiteQuality
SIO_000300: 9.96098e5

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.74e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.144e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

GenotypeQuality
all individuals: 2378
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7874
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 315
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1971
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 493
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5848
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1524
bin: 6.75e1
variant carriers: 1

Latino
type: Population
allele count: 3
allele frequency: 4.017139796464917e-4
allele num: 7468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

African
type: Population
allele count: 61
allele frequency: 8.100929614873837e-3
allele num: 7530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.937783028155148e-5
allele num: 50790
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.144e1

DP
type: SiteQuality
SIO_000300: 9.96098e5

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 5.816e1

FS
type: SiteQuality
SIO_000300: 8.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.74e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

GenotypeQuality
all individuals: 10353
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31058
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.581277672359266e-4
allele num: 56916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.647989452867502e-4
allele num: 6068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7050
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

FS
type: SiteQuality
SIO_000300: 5.498e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.814e-1

DP
type: SiteQuality
SIO_000300: 1.22063e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

MQ
type: SiteQuality
SIO_000300: 5.893e1

QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
all individuals: 447
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2640
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.25e1
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GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
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variant carriers: 0

GenotypeQuality
all individuals: 33389
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.729804532087874e-5
allele num: 57810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12194
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -7.835e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.047e1

DP
type: SiteQuality
SIO_000300: 1.249285e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 437
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45806
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.109704641350211e-4
allele num: 9480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.05e-1

QD
type: SiteQuality
SIO_000300: 3.035e1

MQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

FS
type: SiteQuality
SIO_000300: 8.529e0

VQSLOD
type: SiteQuality
SIO_000300: -1.348e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.254e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.44e-1

DP
type: SiteQuality
SIO_000300: 1.460352e6

MQ
type: SiteQuality
SIO_000300: 5.847e1

GenotypeQuality
all individuals: 1748
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5627
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48834
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variant carriers: 0

GenotypeQuality
all individuals: 449
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variant carriers: 0

GenotypeQuality
all individuals: 936
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66136
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 2.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.355e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.436e0

DP
type: SiteQuality
SIO_000300: 1.480145e6

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.043e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

GenotypeQuality
all individuals: 135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48990
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variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509661835748792e-5
allele num: 66240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.096e0

FS
type: SiteQuality
SIO_000300: 7.012e0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

QD
type: SiteQuality
SIO_000300: 1.585e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 1.482608e6

MQ
type: SiteQuality
SIO_000300: 5.918e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
SIO_000300: 1.288e0

VQSLOD
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.474e0

DP
type: SiteQuality
SIO_000300: 1.489514e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 1.135e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.896e1

GenotypeQuality
all individuals: 406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 50459
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

VQSLOD
type: SiteQuality
SIO_000300: -1.17e0

MQ
type: SiteQuality
SIO_000300: 5.861e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.490165e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

FS
type: SiteQuality
SIO_000300: 1.608e0

QD
type: SiteQuality
SIO_000300: 1.002e1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5633
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.490637e6

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.435e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.727e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.911e0

MQRankSum
type: SiteQuality
SIO_000300: -7.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

MQ
type: SiteQuality
SIO_000300: 5.865e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.492481e6

FS
type: SiteQuality
SIO_000300: 3.053e0

VQSLOD
type: SiteQuality
SIO_000300: -3.001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.44e-2

QD
type: SiteQuality
SIO_000300: 1.447e1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.936858415649816e-4
allele num: 10326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.895e1

FS
type: SiteQuality
SIO_000300: 1.269e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.225e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

DP
type: SiteQuality
SIO_000300: 1.492516e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

QD
type: SiteQuality
SIO_000300: 1.415e1

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.148e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

MQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e-1

DP
type: SiteQuality
SIO_000300: 1.493474e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 1.139e1

GenotypeQuality
all individuals: 407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50662
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

FS
type: SiteQuality
SIO_000300: 2.498e0

QD
type: SiteQuality
SIO_000300: 1.472e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.17e0

DP
type: SiteQuality
SIO_000300: 1.493372e6

MQ
type: SiteQuality
SIO_000300: 5.757e1

VQSLOD
type: SiteQuality
SIO_000300: -2.069e0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5601
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.925298421255295e-4
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 1.988587238457548e-3
allele num: 11566
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 77
allele frequency: 1.15411133427261e-3
allele num: 66718
num of homozygotes: 1

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

DP
type: SiteQuality
SIO_000300: 1.498559e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.259e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
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variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

DP
type: SiteQuality
SIO_000300: 1.498559e6

QD
type: SiteQuality
SIO_000300: 1.259e1

MQ
type: SiteQuality
SIO_000300: 5.882e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

GenotypeQuality
all individuals: 1101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 5612
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.494161e6

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

FS
type: SiteQuality
SIO_000300: 1.781e0

MQRankSum
type: SiteQuality
SIO_000300: 8.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.899e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

QD
type: SiteQuality
SIO_000300: 1.055e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 5614
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.807e1

VQSLOD
type: SiteQuality
SIO_000300: -1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

DP
type: SiteQuality
SIO_000300: 1.493598e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e0

QD
type: SiteQuality
SIO_000300: 1.064e1

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50647
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 883
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variant carriers: 0

GenotypeQuality
all individuals: 5610
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.846e0

QD
type: SiteQuality
SIO_000300: 1.09e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.157e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 1.0602e1

MQ
type: SiteQuality
SIO_000300: 5.851e1

DP
type: SiteQuality
SIO_000300: 1.493738e6

GenotypeQuality
all individuals: 50636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
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variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

VQSLOD
type: SiteQuality
SIO_000300: -1.01e-2

FS
type: SiteQuality
SIO_000300: 2.716e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

DP
type: SiteQuality
SIO_000300: 1.493837e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 1.088e1