http://identifiers.org/exac.variant/5-134670724-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670724
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670724
    reference: chr 5
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1061T>G
  hgvsp: ENSP00000424971.1:p.Phe354Cys
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1061T>G
  hgvsp: ENSP00000423563.1:p.Phe354Cys
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1922T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1155T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.545T>G
  hgvsp: ENSP00000415121.2:p.Phe182Cys
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2901A>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*636T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1052T>G
  hgvsp: ENSP00000310169.4:p.Phe351Cys
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1058T>G
  hgvsp: ENSP00000302572.4:p.Phe353Cys
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+873A>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10329T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1091T>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe354Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/5-134670741-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670741
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670741
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1044G>T
  hgvsp: ENST00000510038.1:c.1044G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1035G>T
  hgvsp: ENST00000312469.4:c.1035G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1041G>T
  hgvsp: ENST00000304332.4:c.1041G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1044G>T
  hgvsp: ENST00000511689.1:c.1044G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1905G>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2884C>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.528G>T
  hgvsp: ENST00000423969.2:c.528G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10312G>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1138G>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*619G>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+890C>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1074G>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr348Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

5-134670741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670741
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670741
    reference: chr 5
allele count: 5884
allele frequency: 4.846787479406919e-2
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1035G>A
  hgvsp: ENST00000312469.4:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1044G>A
  hgvsp: ENST00000511689.1:c.1044G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1041G>A
  hgvsp: ENST00000304332.4:c.1041G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1138G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1044G>A
  hgvsp: ENST00000510038.1:c.1044G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10312G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*619G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.528G>A
  hgvsp: ENST00000423969.2:c.528G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1074G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+890C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1905G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2884C>T
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.25e1
  variant carriers: 422
genotype depth: GenotypeDepth
  all individuals: 13623
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.75e1
  variant carriers: 417
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 22030
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 9.25e1
  variant carriers: 408
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 9.75e1
  variant carriers: 2899
genotype quality: GenotypeQuality
hgvs: p.Thr348Thr
num of homozygotes: 174
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

5-134670742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670742
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670742
    reference: chr 5
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1904C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1137C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1034C>T
  hgvsp: ENSP00000310169.4:p.Thr345Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1040C>T
  hgvsp: ENSP00000302572.4:p.Thr347Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+891G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1043C>T
  hgvsp: ENSP00000424971.1:p.Thr348Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1043C>T
  hgvsp: ENSP00000423563.1:p.Thr348Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10311C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.527C>T
  hgvsp: ENSP00000415121.2:p.Thr176Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1073C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*618C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2883G>A
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr348Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

5-134670753-A-AGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670753
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670756
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: AGAG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*604_*606dupCTC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1123_1125dupCTC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1020_1022dupCTC
  hgvsp: ENSP00000310169.4:p.Ser341dup
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1029_1031dupCTC
  hgvsp: ENSP00000423563.1:p.Ser344dup
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1026_1028dupCTC
  hgvsp: ENSP00000302572.4:p.Ser343dup
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1029_1031dupCTC
  hgvsp: ENSP00000424971.1:p.Ser344dup
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2869_436-2867dupGGA
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10297_10299dupCTC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1059_1061dupCTC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+905_43+907dupGGA
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1890_1892dupCTC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.513_515dupCTC
  hgvsp: ENSP00000415121.2:p.Ser172dup
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser344dup
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum

5-134670755-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670755
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670755
    reference: chr 5
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.514T>A
  hgvsp: ENSP00000415121.2:p.Ser172Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1030T>A
  hgvsp: ENSP00000423563.1:p.Ser344Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1060T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2870A>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1030T>A
  hgvsp: ENSP00000424971.1:p.Ser344Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10298T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1891T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1021T>A
  hgvsp: ENSP00000310169.4:p.Ser341Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*605T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1027T>A
  hgvsp: ENSP00000302572.4:p.Ser343Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1124T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+904A>T
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser344Thr
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

5-134670757-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670757
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670757
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.512C>A
  hgvsp: ENSP00000415121.2:p.Ser171Tyr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2868G>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10296C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1025C>A
  hgvsp: ENSP00000302572.4:p.Ser342Tyr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1028C>A
  hgvsp: ENSP00000423563.1:p.Ser343Tyr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+906G>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*603C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1028C>A
  hgvsp: ENSP00000424971.1:p.Ser343Tyr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1019C>A
  hgvsp: ENSP00000310169.4:p.Ser340Tyr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1122C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1058C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1889C>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser343Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

5-134670759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670759
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670759
    reference: chr 5
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1026G>A
  hgvsp: ENSP00000424971.1:p.Met342Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1017G>A
  hgvsp: ENSP00000310169.4:p.Met339Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1056G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1887G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.510G>A
  hgvsp: ENSP00000415121.2:p.Met170Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1026G>A
  hgvsp: ENSP00000423563.1:p.Met342Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*601G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+908C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1120G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1023G>A
  hgvsp: ENSP00000302572.4:p.Met341Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10294G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2866C>T
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met342Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

5-134670760-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670760
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670760
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10293T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1016T>C
  hgvsp: ENSP00000310169.4:p.Met339Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1022T>C
  hgvsp: ENSP00000302572.4:p.Met341Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1119T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1055T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2865A>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1886T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1025T>C
  hgvsp: ENSP00000424971.1:p.Met342Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1025T>C
  hgvsp: ENSP00000423563.1:p.Met342Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.509T>C
  hgvsp: ENSP00000415121.2:p.Met170Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*600T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+909A>G
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met342Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

5-134670761-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670761
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670761
    reference: chr 5
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.508A>G
  hgvsp: ENSP00000415121.2:p.Met170Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1021A>G
  hgvsp: ENSP00000302572.4:p.Met341Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10292A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1015A>G
  hgvsp: ENSP00000310169.4:p.Met339Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1054A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*599A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1885A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1024A>G
  hgvsp: ENSP00000423563.1:p.Met342Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+910T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1118A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1024A>G
  hgvsp: ENSP00000424971.1:p.Met342Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2864T>C
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met342Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

5-134670765-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670765
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670765
    reference: chr 5
allele count: 10401
allele frequency: 8.568392262826638e-2
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*595T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1114T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.504T>C
  hgvsp: ENST00000423969.2:c.504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1017T>C
  hgvsp: ENST00000304332.4:c.1017T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2860A>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10288T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1011T>C
  hgvsp: ENST00000312469.4:c.1011T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1020T>C
  hgvsp: ENST00000510038.1:c.1020T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1020T>C
  hgvsp: ENST00000511689.1:c.1020T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1050T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1881T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+914A>G
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.75e1
  variant carriers: 601
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 21947
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.75e1
  variant carriers: 703
genotype depth: GenotypeDepth
  all individuals: 13545
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 3.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.75e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 9.75e1
  variant carriers: 4283
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 647
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 4.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 8.75e1
  variant carriers: 693
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 469
genotype quality: GenotypeQuality
hgvs: p.Ser340Ser
num of homozygotes: 668
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-134670769-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670769
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670769
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1877T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*591T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.500T>C
  hgvsp: ENSP00000415121.2:p.Val167Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1110T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1016T>C
  hgvsp: ENSP00000423563.1:p.Val339Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1013T>C
  hgvsp: ENSP00000302572.4:p.Val338Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1016T>C
  hgvsp: ENSP00000424971.1:p.Val339Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1007T>C
  hgvsp: ENSP00000310169.4:p.Val336Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10284T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2856A>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1046T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+918A>G
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val339Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

5-134670770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670770
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670770
    reference: chr 5
allele count: 12
allele frequency: 9.884678747940691e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1006G>A
  hgvsp: ENSP00000310169.4:p.Val336Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1015G>A
  hgvsp: ENSP00000423563.1:p.Val339Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1876G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1109G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1015G>A
  hgvsp: ENSP00000424971.1:p.Val339Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1045G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2855C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*590G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1012G>A
  hgvsp: ENSP00000302572.4:p.Val338Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.499G>A
  hgvsp: ENSP00000415121.2:p.Val167Met
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+919C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10283G>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val339Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-134670771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670771
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670771
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2854G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.498C>T
  hgvsp: ENST00000423969.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1875C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1005C>T
  hgvsp: ENST00000312469.4:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1014C>T
  hgvsp: ENST00000511689.1:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1014C>T
  hgvsp: ENST00000510038.1:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10282C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1044C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+920G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*589C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1011C>T
  hgvsp: ENST00000304332.4:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1108C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe338Phe
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

5-134670774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670774
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670774
    reference: chr 5
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.1011C>T
  hgvsp: ENST00000511689.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.1008C>T
  hgvsp: ENST00000304332.4:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*586C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+923G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.1011C>T
  hgvsp: ENST00000510038.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.495C>T
  hgvsp: ENST00000423969.2:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1041C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2851G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.1002C>T
  hgvsp: ENST00000312469.4:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10279C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1872C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1105C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr337Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

5-134670790-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670790
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670790
    reference: chr 5
allele count: 4
allele frequency: 3.29549012176836e-5
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.479A>G
  hgvsp: ENSP00000415121.2:p.Lys160Arg
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.995A>G
  hgvsp: ENSP00000424971.1:p.Lys332Arg
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+939T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1025A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1856A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2835T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10263A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.986A>G
  hgvsp: ENSP00000310169.4:p.Lys329Arg
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.995A>G
  hgvsp: ENSP00000423563.1:p.Lys332Arg
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1089A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*570A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.992A>G
  hgvsp: ENSP00000302572.4:p.Lys331Arg
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys332Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

5-134670792-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670792
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670792
    reference: chr 5
allele count: 9
allele frequency: 7.414974953862378e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1854G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.477G>C
  hgvsp: ENST00000423969.2:c.477G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.993G>C
  hgvsp: ENST00000511689.1:c.993G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1023G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.993G>C
  hgvsp: ENST00000510038.1:c.993G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.990G>C
  hgvsp: ENST00000304332.4:c.990G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.984G>C
  hgvsp: ENST00000312469.4:c.984G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2833C>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1087G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*568G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+941C>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10261G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2768G>C
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu331Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-134670796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670796
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670796
    reference: chr 5
allele count: 3
allele frequency: 2.471780505891077e-5
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.989T>C
  hgvsp: ENSP00000424971.1:p.Ile330Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.473T>C
  hgvsp: ENSP00000415121.2:p.Ile158Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10257T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1083T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.989T>C
  hgvsp: ENSP00000423563.1:p.Ile330Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.986T>C
  hgvsp: ENSP00000302572.4:p.Ile329Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.980T>C
  hgvsp: ENSP00000310169.4:p.Ile327Thr
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2829A>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*564T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2764T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+945A>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1850T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1019T>C
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile330Thr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

5-134670797-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670797
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670797
    reference: chr 5
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.472A>G
  hgvsp: ENSP00000415121.2:p.Ile158Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.988A>G
  hgvsp: ENSP00000424971.1:p.Ile330Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1082A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2763A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.988A>G
  hgvsp: ENSP00000423563.1:p.Ile330Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.979A>G
  hgvsp: ENSP00000310169.4:p.Ile327Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1018A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*563A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.985A>G
  hgvsp: ENSP00000302572.4:p.Ile329Val
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2828T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+946T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10256A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1849A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile330Val
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

5-134670810-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670810
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670810
    reference: chr 5
allele count: 8
allele frequency: 6.596523632045912e-5
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1005A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.975A>G
  hgvsp: ENST00000511689.1:c.975A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+959T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2750A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.975A>G
  hgvsp: ENST00000510038.1:c.975A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1069A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10243A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1836A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.459A>G
  hgvsp: ENST00000423969.2:c.459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.972A>G
  hgvsp: ENST00000304332.4:c.972A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2815T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.966A>G
  hgvsp: ENST00000312469.4:c.966A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*550A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Thr325Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

5-134670811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670811
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670811
    reference: chr 5
allele count: 5
allele frequency: 4.123371268349002e-5
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1835C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.974C>T
  hgvsp: ENSP00000423563.1:p.Thr325Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10242C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.458C>T
  hgvsp: ENSP00000415121.2:p.Thr153Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.971C>T
  hgvsp: ENSP00000302572.4:p.Thr324Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1068C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*549C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.965C>T
  hgvsp: ENSP00000310169.4:p.Thr322Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2749C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.974C>T
  hgvsp: ENSP00000424971.1:p.Thr325Ile
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1004C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2814G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+960G>A
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr325Ile
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

5-134670812-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670812
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670812
    reference: chr 5
allele count: 4
allele frequency: 3.298914657077821e-5
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1834A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2748A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.973A>G
  hgvsp: ENSP00000424971.1:p.Thr325Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1067A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+961T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.964A>G
  hgvsp: ENSP00000310169.4:p.Thr322Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.457A>G
  hgvsp: ENSP00000415121.2:p.Thr153Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.973A>G
  hgvsp: ENSP00000423563.1:p.Thr325Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*548A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.1003A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.970A>G
  hgvsp: ENSP00000302572.4:p.Thr324Ala
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10241A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2813T>C
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26341
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr325Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

5-134670827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670827
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670827
    reference: chr 5
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.958G>A
  hgvsp: ENSP00000424971.1:p.Gly320Ser
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1819G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+976C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1052G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.988G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.442G>A
  hgvsp: ENSP00000415121.2:p.Gly148Ser
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10226G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2733G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.955G>A
  hgvsp: ENSP00000302572.4:p.Gly319Ser
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.958G>A
  hgvsp: ENSP00000423563.1:p.Gly320Ser
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*533G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.949G>A
  hgvsp: ENSP00000310169.4:p.Gly317Ser
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2798C>T
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly320Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

5-134670828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670828
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670828
    reference: chr 5
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.954C>T
  hgvsp: ENST00000304332.4:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+977G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2797G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*532C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.957C>T
  hgvsp: ENST00000510038.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.948C>T
  hgvsp: ENST00000312469.4:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.987C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.441C>T
  hgvsp: ENST00000423969.2:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2732C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1818C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.957C>T
  hgvsp: ENST00000511689.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1051C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10225C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn319Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

5-134670839-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670839
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670839
    reference: chr 5
allele count: 3
allele frequency: 2.492770964203809e-5
allele num: 120348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2786A>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-8T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+988A>G
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.954-8T>C
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

5-134670842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670842
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670842
    reference: chr 5
allele count: 1
allele frequency: 8.314625426124552e-6
allele num: 120270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+991G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2783G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-11C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-11C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15266
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

5-134670843-A-AAGAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670843
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670847
    reference: chr 5
allele count: 2
allele frequency: 1.663589026966778e-5
allele num: 120222
alternate allele: AAGAT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-16_984-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-16_10222-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2780_436-2777dupGATA
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-16_1815-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-16_438-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-16_954-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-16_2729-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-16_954-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-16_951-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+994_43+997dupGATA
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-16_*529-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-16_1048-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-16_945-13dupATCT
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ

5-134670846-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670846
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670846
    reference: chr 5
allele count: 1
allele frequency: 8.332638946754437e-6
allele num: 120010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2779A>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+995A>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-15T>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-15T>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

5-134670847-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670847
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670847
    reference: chr 5
allele count: 6
allele frequency: 5.0e-5
allele num: 120000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+996T>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-16A>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2778T>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-16A>C
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14954
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

5-134670850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670850
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670850
    reference: chr 5
allele count: 1
allele frequency: 8.345434212942099e-6
allele num: 119826
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+999G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2775G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-19C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-19C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/5-134670852-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670852
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670852
    reference: chr 5
allele count: 3
allele frequency: 2.507564486200037e-5
allele num: 119638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1001A>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2773A>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-21T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-21T>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

5-134670855-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670855
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670855
    reference: chr 5
allele count: 2
allele frequency: 1.673892301769304e-5
allele num: 119482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1004C>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2770C>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-24G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-24G>C
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-134670856-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670856
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670856
    reference: chr 5
allele count: 1
allele frequency: 8.371983992766606e-6
allele num: 119446
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1005A>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-25T>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2769A>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-25T>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14105
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

5-134670861-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670861
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670861
    reference: chr 5
allele count: 2
allele frequency: 1.679035561973203e-5
allele num: 119116
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1010C>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-30G>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2764C>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-30G>C
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

5-134670861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670861
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670861
    reference: chr 5
allele count: 2
allele frequency: 1.679035561973203e-5
allele num: 119116
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1010C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-30G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2764C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-30G>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

5-134670872-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670872
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670873
    reference: chr 5
allele count: 1
allele frequency: 8.50210001870462e-6
allele num: 117618
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2748dupG
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1026dupG
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-42dupC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-42dupC
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11885
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

5-134670872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670872
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670872
    reference: chr 5
allele count: 4
allele frequency: 3.400840007481848e-5
allele num: 117618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1021C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2753C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-41G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-41G>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14122
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-134670873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670873
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670873
    reference: chr 5
allele count: 3
allele frequency: 2.566252074387094e-5
allele num: 116902
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1022G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2752G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-42C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-42C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7262
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

5-134670873-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670873
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670873
    reference: chr 5
allele count: 2
allele frequency: 1.710834716258062e-5
allele num: 116902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1022G>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-42C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2752G>T
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12264
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

5-134670876-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670876
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670876
    reference: chr 5
allele count: 1
allele frequency: 8.537230863797019e-6
allele num: 117134
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1025G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2749G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-45C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-45C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

5-134670876-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670876
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670876
    reference: chr 5
allele count: 1
allele frequency: 8.537230863797019e-6
allele num: 117134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1025G>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2749G>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-45C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-45C>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

5-134670882-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134670882
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134670882
    reference: chr 5
allele count: 5
allele frequency: 4.335310234800402e-5
allele num: 115332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-2743A>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.43+1031A>G
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-51T>C
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-51T>C
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13081
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

5-134673575-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134673575
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134673575
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.44-46G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-2744C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.436-50G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-2744C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

5-134673660-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134673660
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134673660
    reference: chr 5
allele count: 1
allele frequency: 1.982553528945282e-4
allele num: 5044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.32T>C
  hgvsp: ENSP00000452561.3:p.Val11Ala
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.83T>C
  hgvsp: ENSP00000402151.3:p.Val28Ala
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-2829A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224186
  ensembl transcript: ENST00000513931
  gene symbol: C5orf66
  hgvsc: ENST00000513931.2:n.471T>C
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val28Ala
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

5-134673708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134673708
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134673708
    reference: chr 5
allele count: 5
allele frequency: 1.565435190983093e-3
allele num: 3194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.126+5C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-2877G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-2877G>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.126+5C>T
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

5-134673723-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134673723
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134673723
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 2008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+20T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.126+20T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-2892A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-2892A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

5-134673730-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134673730
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134673729
    reference: chr 5
allele count: 1
allele frequency: 6.180469715698393e-4
allele num: 1618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+30delG
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.126+30delG
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-2900delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-2900delC
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: TG
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-134673737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134673737
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134673737
    reference: chr 5
allele count: 1
allele frequency: 7.496251874062968e-4
allele num: 1334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.438-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1815-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.951-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.984-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*529-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+34C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.126+34C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10222-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.954-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1048-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2729-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.954-2906G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.945-2906G>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

5-134678796-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678796
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678796
    reference: chr 5
allele count: 2
allele frequency: 3.230704616676897e-5
allele num: 61906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.127-49T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5093T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+154A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+154A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22187
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18587
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

5-134678815-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678815
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678815
    reference: chr 5
allele count: 1
allele frequency: 1.517220452131695e-5
allele num: 65910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.127-30T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5112T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+135A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+135A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-134678823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678823
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678823
    reference: chr 5
allele count: 1
allele frequency: 1.425963951631303e-5
allele num: 70128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5120G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.127-22G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+127C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+127C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13542
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-134678830-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678830
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678830
    reference: chr 5
allele count: 1
allele frequency: 1.316967813306643e-5
allele num: 75932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5127G>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+120C>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.127-15G>T
  variant of: http://identifiers.org/hgnc/48332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20124
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

5-134678836-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678836
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678836
    reference: chr 5
allele count: 7
allele frequency: 8.417103554422587e-5
allele num: 83164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.127-9T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5133T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+114A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+114A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25907
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-134678845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678845
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678845
    reference: chr 5
allele count: 1
allele frequency: 1.070663811563169e-5
allele num: 93400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5142G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.127G>A
  hgvsp: ENSP00000402151.3:p.Ala43Thr
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+105C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+105C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala43Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

5-134678846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678846
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678846
    reference: chr 5
allele count: 4
allele frequency: 4.226989326851949e-5
allele num: 94630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5143C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.128C>T
  hgvsp: ENSP00000402151.3:p.Ala43Val
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+104G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+104G>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32601
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala43Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

5-134678851-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678851
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678851
    reference: chr 5
allele count: 1
allele frequency: 9.711189232233379e-6
allele num: 102974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.133T>C
  hgvsp: ENSP00000402151.3:p.Ser45Pro
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5148T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+99A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+99A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser45Pro
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-134678853-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678853
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678853
    reference: chr 5
allele count: 1
allele frequency: 9.484426571569482e-6
allele num: 105436
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.135C>T
  hgvsp: ENST00000432382.3:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5150C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+97G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+97G>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser45Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

5-134678853-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678853
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678852
    reference: chr 5
allele count: 5
allele frequency: 4.742213285784741e-5
allele num: 105436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.136delG
  hgvsp: ENSP00000402151.3:p.Val46TrpfsTer26
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5151delG
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+96delC
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+96delC
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38063
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val46TrpfsTer26
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: CG
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

5-134678854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678854
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678854
    reference: chr 5
allele count: 2
allele frequency: 1.84777989245921e-5
allele num: 108238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.136G>A
  hgvsp: ENSP00000402151.3:p.Val46Met
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5151G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+96C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+96C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val46Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

5-134678862-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678862
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678862
    reference: chr 5
allele count: 1
allele frequency: 8.663709453839756e-6
allele num: 115424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5159T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.144T>C
  hgvsp: ENST00000432382.3:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+88A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+88A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42423
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu48Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

5-134678863-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678863
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678863
    reference: chr 5
allele count: 6490
allele frequency: 5.579819795034047e-2
allele num: 116312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.145G>A
  hgvsp: ENSP00000402151.3:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5160G>A
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+87C>T
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+87C>T
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10052
  bin: 2.75e1
  variant carriers: 960
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.75e1
  variant carriers: 505
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 3.25e1
  variant carriers: 1090
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 38468
  bin: 2.25e1
  variant carriers: 533
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 1070
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.25e1
  variant carriers: 810
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
hgvs: p.Ala49Thr
num of homozygotes: 236
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

5-134678866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678866
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678866
    reference: chr 5
allele count: 10
allele frequency: 8.488531993277083e-5
allele num: 117806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5163C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.148C>T
  hgvsp: ENSP00000402151.3:p.Gln50Ter
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+84G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+84G>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gln50Ter
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

5-134678871-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678871
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678871
    reference: chr 5
allele count: 12
allele frequency: 1.007759750075582e-4
allele num: 119076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5168T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.153T>C
  hgvsp: ENST00000432382.3:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+79A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+79A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39317
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser51Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

5-134678874-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678874
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678874
    reference: chr 5
allele count: 2
allele frequency: 1.671681711802073e-5
allele num: 119640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5171G>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.156G>C
  hgvsp: ENSP00000402151.3:p.Glu52Asp
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+76C>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+76C>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12067
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu52Asp
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

5-134678882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678882
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678882
    reference: chr 5
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5179C>T
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.164C>T
  hgvsp: ENSP00000402151.3:p.Thr55Ile
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+68G>A
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+68G>A
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr55Ile
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-134678888-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134678888
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 134678888
    reference: chr 5
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423718
  ensembl transcript: ENST00000506671
  gene symbol: H2AFY
  hgvsc: ENST00000506671.1:c.*528+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000451949
  gene symbol: H2AFY
  hgvsc: ENST00000451949.2:n.983+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000360597
  gene symbol: H2AFY
  hgvsc: ENST00000360597.4:n.1047+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000424971
  ensembl transcript: ENST00000510038
  gene symbol: H2AFY
  hgvsc: ENST00000510038.1:c.953+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000302572
  ensembl transcript: ENST00000304332
  gene symbol: H2AFY
  hgvsc: ENST00000304332.4:c.950+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000415121
  ensembl transcript: ENST00000423969
  gene symbol: H2AFY
  hgvsc: ENST00000423969.2:c.437+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000512507
  gene symbol: H2AFY
  hgvsc: ENST00000512507.1:n.10221+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000310169
  ensembl transcript: ENST00000312469
  gene symbol: H2AFY
  hgvsc: ENST00000312469.4:c.944+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000452561
  ensembl transcript: ENST00000555438
  gene symbol: C5orf66
  hgvsc: ENST00000555438.1:c.75+5185T>C
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000505827
  gene symbol: H2AFY
  hgvsc: ENST00000505827.1:n.2728+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000224186
  ensembl protein: ENSP00000402151
  ensembl transcript: ENST00000432382
  gene symbol: C5orf66
  hgvsc: ENST00000432382.3:c.170T>C
  hgvsp: ENSP00000402151.3:p.Met57Thr
  variant of: http://identifiers.org/hgnc/48332
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl transcript: ENST00000511494
  gene symbol: H2AFY
  hgvsc: ENST00000511494.1:n.1814+62A>G
  variant of: http://identifiers.org/hgnc/4740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113648
  ensembl protein: ENSP00000423563
  ensembl transcript: ENST00000511689
  gene symbol: H2AFY
  hgvsc: ENST00000511689.1:c.953+62A>G
  variant of: http://identifiers.org/hgnc/4740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met57Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

GenotypeDepth
all individuals: 659
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 774
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29056
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12229
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9040
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.325e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
SIO_000300: 4.142e0

MQRankSum
type: SiteQuality
SIO_000300: -1.195e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

DP
type: SiteQuality
SIO_000300: 2.43515e6

GenotypeDepth
all individuals: 579
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12920
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28793
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

QD
type: SiteQuality
SIO_000300: 1.412e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 2.499855e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeDepth
all individuals: 625
bin: 7.25e1
variant carriers: 317

GenotypeDepth
all individuals: 679
bin: 7.75e1
variant carriers: 347

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8929
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12920
bin: 9.75e1
variant carriers: 5702

GenotypeQuality
all individuals: 3242
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 825
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28793
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 414
allele frequency: 4.787234042553191e-2
allele num: 8648
num of homozygotes: 4

South Asian
type: Population
allele count: 1203
allele frequency: 7.28561046511628e-2
allele num: 16512
num of homozygotes: 55

Other
type: Population
allele count: 44
allele frequency: 4.845814977973568e-2
allele num: 908
num of homozygotes: 1

Latino
type: Population
allele count: 252
allele frequency: 2.176541717049577e-2
allele num: 11578
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 3527
allele frequency: 5.285161986393742e-2
allele num: 66734
num of homozygotes: 97

African
type: Population
allele count: 134
allele frequency: 1.287718623870844e-2
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 310
allele frequency: 4.68702751738736e-2
allele num: 6614
num of homozygotes: 14

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 2.499855e6

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.44e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

GenotypeDepth
all individuals: 875
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12847
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28807
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

QD
type: SiteQuality
SIO_000300: 1.208e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.436337e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeDepth
all individuals: 1204
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 745
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Other
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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QD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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East Asian
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Other
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Latino
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African
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European (Finnish)
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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num of homozygotes: 0

Other
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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Other
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African
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allele num: 10406
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East Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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MQRankSum
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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African
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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DP
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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African
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East Asian
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South Asian
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Other
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MQRankSum
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BaseQRankSum
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QD
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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GenotypeDepth
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variant carriers: 705

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

South Asian
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allele count: 1412
allele frequency: 8.551356589147287e-2
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num of homozygotes: 74

Latino
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allele count: 462
allele frequency: 3.9917055469155e-2
allele num: 11574
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European (Non-Finnish)
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allele frequency: 7.278367200143859e-2
allele num: 66732
num of homozygotes: 187

Other
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African
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allele count: 2797
allele frequency: 2.688389081122645e-1
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East Asian
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allele count: 436
allele frequency: 5.042794355771455e-2
allele num: 8646
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European (Finnish)
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allele count: 376
allele frequency: 5.686630369026013e-2
allele num: 6612
num of homozygotes: 19

VQSLOD
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DP
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MQRankSum
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QD
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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DP
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QD
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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MQ
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QD
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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South Asian
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Other
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European (Non-Finnish)
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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FS
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BaseQRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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East Asian
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African
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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QD
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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East Asian
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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African
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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Latino
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66712
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European (Finnish)
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East Asian
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Other
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FS
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QD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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allele num: 8650
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European (Finnish)
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Other
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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African
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Latino
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allele frequency: 3.457216940363008e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.5004500450045e-5
allele num: 66660
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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Other
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African
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European (Finnish)
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allele num: 6608
num of homozygotes: 0

South Asian
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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VQSLOD
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DP
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FS
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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African
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South Asian
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Other
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.401e1

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.808998e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9957
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507340749449821e-5
allele num: 66342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.0e-4

QD
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BaseQRankSum
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SIO_000300: -3.021e0

ClippingRankSum
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SIO_000300: 1.74e0

VQSLOD
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SIO_000300: -1.138e0

FS
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SIO_000300: 3.291e0

MQ
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SIO_000300: 5.886e1

MQRankSum
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.804292e6

ReadPosRankSum
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SIO_000300: -1.057e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.332633543270352e-4
allele num: 8574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

MQRankSum
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SIO_000300: -4.72e-1

ClippingRankSum
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SIO_000300: -7.43e-1

DP
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SIO_000300: 1.800924e6

ReadPosRankSum
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QD
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SIO_000300: 1.219e1

InbreedingCoeff
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SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9809
bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66268
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.301991429291656e-5
allele num: 15868
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.784491e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.278999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

QD
type: SiteQuality
SIO_000300: 1.504e1

FS
type: SiteQuality
SIO_000300: 1.0492e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.476447071093343e-4
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.336994624912363e-4
allele num: 8558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQ
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SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 1.787e0

QD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

DP
type: SiteQuality
SIO_000300: 1.783925e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2290
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.338742393509128e-5
allele num: 15776
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66212
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -3.0e-4

QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.510414228879008e-4
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66140
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 3.44e0

DP
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FS
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.944e1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.324e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1221
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.027825718351652e-5
allele num: 66054
num of homozygotes: 0

South Asian
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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ReadPosRankSum
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MQRankSum
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DP
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SIO_000300: 1.739072e6

BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66058
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65954
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South Asian
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East Asian
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.032416532734936e-5
allele num: 65954
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

DP
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SIO_000300: 1.69107e6

ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65426
num of homozygotes: 0

Other
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Latino
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European (Finnish)
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African
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East Asian
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South Asian
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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African
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East Asian
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European (Non-Finnish)
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Latino
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Other
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FS
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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Latino
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African
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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DP
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VQSLOD
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QD
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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Other
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East Asian
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European (Finnish)
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South Asian
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ReadPosRankSum
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 65248
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African
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South Asian
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Latino
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European (Finnish)
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East Asian
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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VQSLOD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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Other
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South Asian
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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BaseQRankSum
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DP
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MQ
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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South Asian
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ClippingRankSum
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QD
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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DP
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QD
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MQ
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 7
allele frequency: 5.559085133418043e-4
allele num: 12592
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7062
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45924
num of homozygotes: 0

MQRankSum
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SIO_000300: 5.29e-1

BaseQRankSum
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SIO_000300: -1.016e0

InbreedingCoeff
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SIO_000300: -1.5e-3

VQSLOD
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SIO_000300: 2.59e0

FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 2.58e-1

ClippingRankSum
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SIO_000300: -3.19e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

DP
type: SiteQuality
SIO_000300: 1.00749e6

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51574
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.549426712116517e-4
allele num: 6454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

DP
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SIO_000300: 1.125612e6

MQ
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SIO_000300: 5.901e1

BaseQRankSum
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SIO_000300: -2.536e0

VQSLOD
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SIO_000300: -1.412e-1

InbreedingCoeff
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SIO_000300: -1.0e-3

ReadPosRankSum
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SIO_000300: 1.81e-1

MQRankSum
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SIO_000300: 6.34e-1

FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.609e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.119951040391676e-4
allele num: 6536
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52278
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.914e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
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SIO_000300: -8.0e-4

ClippingRankSum
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SIO_000300: 3.87e-1

VQSLOD
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SIO_000300: 3.33e0

MQRankSum
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SIO_000300: -1.71e-1

DP
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SIO_000300: 1.142346e6

QD
type: SiteQuality
SIO_000300: 1.346e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 700
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GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8656
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.852131012744963e-5
allele num: 14594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

QD
type: SiteQuality
SIO_000300: 1.786e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 1.7e-3

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 2.45e-1

DP
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SIO_000300: 1.232556e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58306
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.132246376811594e-4
allele num: 8832
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.993e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14814
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 5.661231884057971e-4
allele num: 8832
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7226
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9584
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BaseQRankSum
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SIO_000300: 2.83e-1

ClippingRankSum
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FS
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 59790
num of homozygotes: 0

European (Finnish)
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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Other
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Latino
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allele num: 9958
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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ReadPosRankSum
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.569464498713039e-5
allele num: 63716
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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FS
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BaseQRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 2
allele frequency: 2.480774001488464e-4
allele num: 8062
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 7.209128553192815e-2
allele num: 64238
num of homozygotes: 179

South Asian
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allele count: 939
allele frequency: 5.886409227683049e-2
allele num: 15952
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African
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allele frequency: 1.125760649087221e-2
allele num: 9860
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Latino
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allele frequency: 3.31511839708561e-2
allele num: 10980
num of homozygotes: 5

European (Finnish)
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allele count: 383
allele frequency: 6.022012578616352e-2
allele num: 6360
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Other
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allele num: 860
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.611837048424289e-5
allele num: 65050
num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.35215120616762e-4
allele num: 16084
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 1
allele frequency: 6.162188809465122e-5
allele num: 16228
num of homozygotes: 0

Other
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allele count: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele count: 0
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Latino
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allele count: 11
allele frequency: 9.707024355806565e-4
allele num: 11332
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ReadPosRankSum
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SIO_000300: 1.0e0

InbreedingCoeff
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FS
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MQRankSum
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MQ
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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MQ
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BaseQRankSum
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FS
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MQRankSum
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DP
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ReadPosRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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QD
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