7-8272431-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8272431
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8272431
    reference: chr 7
allele count: 1
allele frequency: 8.976338372051273e-6
allele num: 111404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.4-68A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.18-46A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.18-49A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.18-49A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.18-46A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+29293A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.18-46A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.4-68A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.18-49A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.18-46A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.18-46A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.18-46A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.18-46A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.18-46A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.18-46A>G
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

7-8272432-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8272432
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8272432
    reference: chr 7
allele count: 1
allele frequency: 8.975210468685491e-6
allele num: 111418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.18-50A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.18-47A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.18-50A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.18-47A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.18-47A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.18-47A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+29292A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.18-47A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.18-47A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.18-47A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.18-47A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.4-69A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.4-69A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.18-47A>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.18-50A>C
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11707
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

7-8272433-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8272433
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8272433
    reference: chr 7
allele count: 1
allele frequency: 8.97166747411674e-6
allele num: 111462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.18-48T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.18-48T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.4-70T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.4-70T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.18-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.18-48T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.18-48T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.18-48T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+29291T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.18-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.18-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.18-48T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.18-48T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.18-48T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.18-48T>C
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

7-8272435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8272435
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8272435
    reference: chr 7
allele count: 1
allele frequency: 8.978111364493366e-6
allele num: 111382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.18-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.18-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.18-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.18-53C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.18-53C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.4-72C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.18-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.4-72C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.18-53C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.18-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.18-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+29289C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.18-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.18-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.18-50C>T
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

7-8275489-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275489
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275489
    reference: chr 7
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.3+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.3+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26235A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.17+51A>G
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

7-8275493-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275493
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275493
    reference: chr 7
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.3+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.3+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26231T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.17+47T>C
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

7-8275495-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275495
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275494
    reference: chr 7
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26228delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.3+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.3+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.17+44delA
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: AT
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

7-8275496-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275496
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275496
    reference: chr 7
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.3+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26228A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.3+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.17+44A>T
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

7-8275506-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275506
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275506
    reference: chr 7
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26218A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.3+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.3+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.17+34A>G
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

7-8275512-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275512
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275512
    reference: chr 7
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.3+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.3+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26212T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.17+28T>C
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

7-8275536-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275536
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275536
    reference: chr 7
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26188A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.3+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.3+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.17+4A>T
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.17+4A>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

7-8275538-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275538
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275538
    reference: chr 7
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.3+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.3+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26186T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.17+2T>C
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.17+2T>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

7-8275544-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275544
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275544
    reference: chr 7
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.13A>G
  hgvsp: ENSP00000397496.1:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.13A>G
  hgvsp: ENSP00000398435.1:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.13A>G
  hgvsp: ENSP00000385570.3:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.13A>G
  hgvsp: ENSP00000406722.1:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.13A>G
  hgvsp: ENSP00000385651.2:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.13A>G
  hgvsp: ENSP00000265577.7:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.13A>G
  hgvsp: ENSP00000403982.2:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-2A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.13A>G
  hgvsp: ENSP00000410341.1:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-2A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.13A>G
  hgvsp: ENSP00000393314.1:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.13A>G
  hgvsp: ENSP00000341603.6:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26180A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.13A>G
  hgvsp: ENSP00000379908.3:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.13A>G
  hgvsp: ENSP00000386021.1:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys5Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

7-8275545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275545
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275545
    reference: chr 7
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.12C>T
  hgvsp: ENST00000446305.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.12C>T
  hgvsp: ENST00000407906.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.12C>T
  hgvsp: ENST00000447326.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.12C>T
  hgvsp: ENST00000402384.3:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.12C>T
  hgvsp: ENST00000396675.3:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.12C>T
  hgvsp: ENST00000457755.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.12C>T
  hgvsp: ENST00000430867.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.12C>T
  hgvsp: ENST00000422063.2:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26179C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.12C>T
  hgvsp: ENST00000406470.2:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-3C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.12C>T
  hgvsp: ENST00000265577.7:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.12C>T
  hgvsp: ENST00000339809.6:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.12C>T
  hgvsp: ENST00000455539.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-3C>T
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His4His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

7-8275545-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275545
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275545
    reference: chr 7
allele count: 2
allele frequency: 1.648641519388024e-5
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.12C>A
  hgvsp: ENSP00000393314.1:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.12C>A
  hgvsp: ENSP00000385570.3:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.12C>A
  hgvsp: ENSP00000379908.3:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.12C>A
  hgvsp: ENSP00000385651.2:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.12C>A
  hgvsp: ENSP00000410341.1:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-3C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-3C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.12C>A
  hgvsp: ENSP00000265577.7:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000403982
  ensembl transcript: ENST00000422063
  gene symbol: ICA1
  hgvsc: ENST00000422063.2:c.12C>A
  hgvsp: ENSP00000403982.2:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.12C>A
  hgvsp: ENSP00000406722.1:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.12C>A
  hgvsp: ENSP00000398435.1:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.12C>A
  hgvsp: ENSP00000341603.6:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.12C>A
  hgvsp: ENSP00000386021.1:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.12C>A
  hgvsp: ENSP00000397496.1:p.His4Gln
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26179C>A
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His4Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-8275559-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275559
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275556
    reference: chr 7
allele count: 3
allele frequency: 2.473003050037095e-5
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-20_-18delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-20_-18delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-6_-4delGAA
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26162_52+26164delGAA
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: TTTC
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

7-8275562-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275562
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275562
    reference: chr 7
allele count: 2
allele frequency: 1.648695881557688e-5
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-20G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-20G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26162G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-6G>A
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

7-8275573-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275573
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275573
    reference: chr 7
allele count: 18
allele frequency: 1.483777367449222e-4
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-17T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-3T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-3T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-31T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-17T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26151T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-17T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-17T>C
  variant of: http://identifiers.org/hgnc/5343
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-14-3T>C
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

7-8275581-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275581
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275581
    reference: chr 7
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26143A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-11A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-25A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-25A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-25A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-11A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-25A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-25A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-39A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-25A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-25A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-39A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-25A>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-25A>T
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

7-8275581-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275581
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275581
    reference: chr 7
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-25A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-25A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-39A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-25A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-11A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-25A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-25A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-25A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-25A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-11A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-25A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-25A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-39A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26143A>G
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

7-8275582-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275582
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275582
    reference: chr 7
allele count: 5
allele frequency: 4.12173970389422e-5
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-40C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-12C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-26C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-26C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-26C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-26C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-40C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-26C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-26C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-26C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-26C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26142C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-12C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-26C>A
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

7-8275584-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275584
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275584
    reference: chr 7
allele count: 29
allele frequency: 2.39072727572505e-4
allele num: 121302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26140A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-28A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-28A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-42A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-28A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-14A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-28A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-14A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-42A>G
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

7-8275592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275592
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275592
    reference: chr 7
allele count: 3
allele frequency: 2.473614775725594e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-36C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-36C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-22C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26132C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-22C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-36C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-36C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-36C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-36C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-36C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-36C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-36C>T
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-8275594-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275594
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275593
    reference: chr 7
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-39delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-39delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-39delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-39delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-39delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26129delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-53delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-25delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-25delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-39delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-53delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-39delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-39delC
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-39delC
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: AG
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

7-8275595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275595
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275595
    reference: chr 7
allele count: 2
allele frequency: 1.649130908011478e-5
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-39C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-25C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-53C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-25C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-39C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-39C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-39C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26129C>T
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

7-8275597-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275597
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275597
    reference: chr 7
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-55C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-55C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-41C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-41C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-41C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-41C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-41C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-41C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-41C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-41C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-27C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26127C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-41C>A
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-27C>A
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD

7-8275600-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275600
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275600
    reference: chr 7
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-44T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-58T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-44T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-58T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-44T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-30T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-44T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26124T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-30T>C
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-8275607-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8275607
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8275607
    reference: chr 7
allele count: 4
allele frequency: 3.29918675046601e-5
allele num: 121242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl transcript: ENST00000486677
  gene symbol: ICA1
  hgvsc: ENST00000486677.1:n.52+26117T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000410341
  ensembl transcript: ENST00000455539
  gene symbol: ICA1
  hgvsc: ENST00000455539.1:c.-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000393314
  ensembl transcript: ENST00000457755
  gene symbol: ICA1
  hgvsc: ENST00000457755.1:c.-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000386021
  ensembl transcript: ENST00000407906
  gene symbol: ICA1
  hgvsc: ENST00000407906.1:c.-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000265577
  ensembl transcript: ENST00000265577
  gene symbol: ICA1
  hgvsc: ENST00000265577.7:c.-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385570
  ensembl transcript: ENST00000402384
  gene symbol: ICA1
  hgvsc: ENST00000402384.3:c.-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385651
  ensembl transcript: ENST00000406470
  gene symbol: ICA1
  hgvsc: ENST00000406470.2:c.-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000341603
  ensembl transcript: ENST00000339809
  gene symbol: ICA1
  hgvsc: ENST00000339809.6:c.-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000398435
  ensembl transcript: ENST00000447326
  gene symbol: ICA1
  hgvsc: ENST00000447326.1:c.-14-37T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000316074
  ensembl transcript: ENST00000317367
  gene symbol: ICA1
  hgvsc: ENST00000317367.5:c.-65T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000397496
  ensembl transcript: ENST00000430867
  gene symbol: ICA1
  hgvsc: ENST00000430867.1:c.-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000406722
  ensembl transcript: ENST00000446305
  gene symbol: ICA1
  hgvsc: ENST00000446305.1:c.-51T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000385305
  ensembl transcript: ENST00000401396
  gene symbol: ICA1
  hgvsc: ENST00000401396.1:c.-65T>C
  variant of: http://identifiers.org/hgnc/5343
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000003147
  ensembl protein: ENSP00000379908
  ensembl transcript: ENST00000396675
  gene symbol: ICA1
  hgvsc: ENST00000396675.3:c.-14-37T>C
  variant of: http://identifiers.org/hgnc/5343
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/7-8475297-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475297
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475297
    reference: chr 7
allele count: 2
allele frequency: 1.656397005234214e-5
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-47C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-47C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-47C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-496C>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

7-8475297-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475297
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475297
    reference: chr 7
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-496C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-8475297-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475297
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475295
    reference: chr 7
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-45_-44delAA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-45_-44delAA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-45_-44delAA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-494_-493delAA
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: CAA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/7-8475305-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475305
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475304
    reference: chr 7
allele count: 2
allele frequency: 1.656342134031205e-5
allele num: 120748
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-36delA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-36delA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-36delA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-485delA
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 50505
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: CA
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

7-8475305-CAAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475305
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475301
    reference: chr 7
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-36_-33delAGAA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-485_-482delAGAA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-36_-33delAGAA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-36_-33delAGAA
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50505
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genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: CAAAG
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

7-8475309-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475309
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475309
    reference: chr 7
allele count: 3
allele frequency: 2.484472049689441e-5
allele num: 120750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-35G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-35G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-484G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-35G>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1278
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50508
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-8475312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475312
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475312
    reference: chr 7
allele count: 11
allele frequency: 9.109579965549225e-5
allele num: 120752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-481G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

7-8475313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475313
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475313
    reference: chr 7
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-480G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50512
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

7-8475313-GCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475313
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475311
    reference: chr 7
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-29_-28delAC
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-29_-28delAC
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-29_-28delAC
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-478_-477delAC
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50512
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: GCA
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

7-8475318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475318
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475318
    reference: chr 7
allele count: 34
allele frequency: 2.815595084302229e-4
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-26G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-26G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-26G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-475G>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50516
  bin: 9.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

7-8475319-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475319
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475319
    reference: chr 7
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-474C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50516
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

7-8475322-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475322
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475322
    reference: chr 7
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-471A>G
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-22A>G
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-22A>G
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-22A>G
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50519
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

7-8475338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475338
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475338
    reference: chr 7
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-455G>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50520
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

7-8475342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475342
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475342
    reference: chr 7
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-451G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

7-8475350-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475350
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475350
    reference: chr 7
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.7G>C
  hgvsp: ENSP00000404689.1:p.Ala3Pro
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-443G>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.7G>C
  hgvsp: ENSP00000384551.1:p.Ala3Pro
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.7G>C
  hgvsp: ENSP00000408216.1:p.Ala3Pro
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50518
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala3Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

7-8475353-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475353
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475353
    reference: chr 7
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.10G>T
  hgvsp: ENSP00000408216.1:p.Ala4Ser
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-440G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.10G>T
  hgvsp: ENSP00000404689.1:p.Ala4Ser
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.10G>T
  hgvsp: ENSP00000384551.1:p.Ala4Ser
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala4Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

7-8475355-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475355
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475355
    reference: chr 7
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-438G>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.12G>A
  hgvsp: ENST00000429542.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.12G>A
  hgvsp: ENST00000405863.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.12G>A
  hgvsp: ENST00000438764.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala4Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

7-8475358-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475358
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475358
    reference: chr 7
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.15C>G
  hgvsp: ENSP00000384551.1:p.Cys5Trp
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.15C>G
  hgvsp: ENSP00000408216.1:p.Cys5Trp
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.15C>G
  hgvsp: ENSP00000404689.1:p.Cys5Trp
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-435C>G
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys5Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

7-8475366-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475366
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475366
    reference: chr 7
allele count: 3
allele frequency: 2.484142887898912e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.23T>C
  hgvsp: ENSP00000404689.1:p.Val8Ala
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.23T>C
  hgvsp: ENSP00000408216.1:p.Val8Ala
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.23T>C
  hgvsp: ENSP00000384551.1:p.Val8Ala
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-427T>C
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50520
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val8Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-8475368-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475368
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475368
    reference: chr 7
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.25C>G
  hgvsp: ENSP00000408216.1:p.Leu9Val
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.25C>G
  hgvsp: ENSP00000384551.1:p.Leu9Val
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-425C>G
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.25C>G
  hgvsp: ENSP00000404689.1:p.Leu9Val
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50518
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu9Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

7-8475383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475383
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475383
    reference: chr 7
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.40C>T
  hgvsp: ENSP00000384551.1:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.40C>T
  hgvsp: ENSP00000404689.1:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-410C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.40C>T
  hgvsp: ENSP00000408216.1:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50518
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro14Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

7-8475386-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475386
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475386
    reference: chr 7
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.43A>G
  hgvsp: ENSP00000404689.1:p.Thr15Ala
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.43A>G
  hgvsp: ENSP00000408216.1:p.Thr15Ala
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.43A>G
  hgvsp: ENSP00000384551.1:p.Thr15Ala
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-407A>G
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr15Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

7-8475389-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475389
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475389
    reference: chr 7
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.46G>T
  hgvsp: ENSP00000384551.1:p.Val16Phe
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.46G>T
  hgvsp: ENSP00000404689.1:p.Val16Phe
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.46G>T
  hgvsp: ENSP00000408216.1:p.Val16Phe
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-404G>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val16Phe
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS

7-8475393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475393
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475393
    reference: chr 7
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.50A>G
  hgvsp: ENSP00000384551.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.50A>G
  hgvsp: ENSP00000408216.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-400A>G
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.50A>G
  hgvsp: ENSP00000404689.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50519
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr17Cys
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

7-8475410-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475410
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475410
    reference: chr 7
allele count: 4364
allele frequency: 3.613779397151375e-2
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+13A>G
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+13A>G
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+13A>G
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+13A>G
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 6.75e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 4.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 6.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 8.75e1
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.25e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 7.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 9.75e1
  variant carriers: 2584
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 5.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 5.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 8.25e1
  variant carriers: 207
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51252
  bin: 9.75e1
  variant carriers: 4189
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 174
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

7-8475415-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475415
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475415
    reference: chr 7
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+18C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+18C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+18C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+18C>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7618
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50580
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

7-8475416-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475416
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475416
    reference: chr 7
allele count: 7
allele frequency: 5.796429399489914e-5
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+19G>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+19G>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+19G>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+19G>C
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50582
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

7-8475416-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475416
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475416
    reference: chr 7
allele count: 9
allele frequency: 7.452552085058461e-5
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+19G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+19G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+19G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+19G>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50582
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

7-8475424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475424
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475424
    reference: chr 7
allele count: 18
allele frequency: 1.490535102101654e-4
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+27C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+27C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+27C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+27C>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-8475426-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475426
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475426
    reference: chr 7
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+29C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+29C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+29C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+29C>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

7-8475426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475426
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475426
    reference: chr 7
allele count: 4
allele frequency: 3.312300226892566e-5
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+29C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+29C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+29C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+29C>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

7-8475427-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475427
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475428
    reference: chr 7
allele count: 2
allele frequency: 1.656150113446283e-5
allele num: 120762
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+35dupT
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+35dupT
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+35dupT
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+35dupT
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

7-8475429-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475429
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475429
    reference: chr 7
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+32T>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+32T>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+32T>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+32T>C
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50578
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-8475430-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475430
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475430
    reference: chr 7
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+33T>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+33T>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+33T>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+33T>C
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

7-8475432-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475432
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475432
    reference: chr 7
allele count: 3
allele frequency: 2.484266313348791e-5
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+35T>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+35T>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+35T>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+35T>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50581
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

7-8475432-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475432
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475432
    reference: chr 7
allele count: 17
allele frequency: 1.407750910897648e-4
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+35T>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+35T>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+35T>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+35T>C
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50581
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/7-8475436-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475436
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475436
    reference: chr 7
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+39C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+39C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+39C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+39C>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7881
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50572
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

7-8475437-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475437
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475437
    reference: chr 7
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+40C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+40C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+40C>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+40C>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50572
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

7-8475438-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475438
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475438
    reference: chr 7
allele count: 7
allele frequency: 5.796813408857531e-5
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+41G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+41G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+41G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+41G>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/7-8475441-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8475441
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8475441
    reference: chr 7
allele count: 2
allele frequency: 1.656342134031205e-5
allele num: 120748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-396+44C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.54+44C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.54+44C>A
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.54+44C>A
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50578
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

7-8790589-TATTCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8790589
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8790583
    reference: chr 7
allele count: 3
allele frequency: 2.567218333361858e-5
allele num: 116858
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.55-47_55-42delTTCTCA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.55-47_55-42delTTCTCA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl transcript: ENST00000497400
  gene symbol: NXPH1
  hgvsc: ENST00000497400.1:n.60-47_60-42delTTCTCA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-297-47_-297-42delTTCTCA
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.55-47_55-42delTTCTCA
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8772
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35684
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: TATTCTC
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-8790605-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8790605
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8790605
    reference: chr 7
allele count: 2
allele frequency: 1.705029838022165e-5
allele num: 117300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl transcript: ENST00000497400
  gene symbol: NXPH1
  hgvsc: ENST00000497400.1:n.60-33G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.55-33G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.55-33G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.55-33G>T
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-297-33G>T
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/7-8790606-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8790606
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 8790606
    reference: chr 7
allele count: 1
allele frequency: 8.523841183791064e-6
allele num: 117318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000473269
  ensembl transcript: ENST00000602349
  gene symbol: NXPH1
  hgvsc: ENST00000602349.1:c.-297-32A>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000408216
  ensembl transcript: ENST00000429542
  gene symbol: NXPH1
  hgvsc: ENST00000429542.1:c.55-32A>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000404689
  ensembl transcript: ENST00000438764
  gene symbol: NXPH1
  hgvsc: ENST00000438764.1:c.55-32A>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl protein: ENSP00000384551
  ensembl transcript: ENST00000405863
  gene symbol: NXPH1
  hgvsc: ENST00000405863.1:c.55-32A>C
  variant of: http://identifiers.org/hgnc/20693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122584
  ensembl transcript: ENST00000497400
  gene symbol: NXPH1
  hgvsc: ENST00000497400.1:n.60-32A>C
  variant of: http://identifiers.org/hgnc/20693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 11642
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 208
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 221
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31041
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 823
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 601
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5586
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561085266477255e-5
allele num: 64058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

FS
type: SiteQuality
SIO_000300: 6.85e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e0

QD
type: SiteQuality
SIO_000300: 1.537e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

DP
type: SiteQuality
SIO_000300: 1.518744e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 64080
num of homozygotes: 0

Latino
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East Asian
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Other
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 64054
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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Other
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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FS
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DP
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ClippingRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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European (Finnish)
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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MQ
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DP
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66680
num of homozygotes: 0

European (Finnish)
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Latino
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Other
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African
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East Asian
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South Asian
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ClippingRankSum
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FS
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VQSLOD
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DP
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 9.0e-4

FS
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MQ
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQ
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QD
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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SIO_000300: -3.612e0

MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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African
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

FS
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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SIO_000300: 3.768163e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 8654
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European (Finnish)
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Latino
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Other
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South Asian
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African
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European (Non-Finnish)
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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Latino
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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DP
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BaseQRankSum
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

African
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South Asian
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East Asian
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Latino
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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FS
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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BaseQRankSum
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QD
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VQSLOD
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MQ
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DP
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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South Asian
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African
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Other
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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East Asian
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QD
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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European (Finnish)
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African
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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DP
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.766188e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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SIO_000300: 1.254e1

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

FS
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.807692307692308e-4
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.61e-1

DP
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SIO_000300: 3.765887e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.99e-1

MQRankSum
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SIO_000300: -2.5e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.778e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

FS
type: SiteQuality
SIO_000300: 3.392e0

QD
type: SiteQuality
SIO_000300: 1.125e1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 29

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2517
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 28
allele frequency: 2.692307692307692e-3
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 1.514e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 3.765976e6

GenotypeDepth
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 770
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variant carriers: 0

GenotypeDepth
all individuals: 3975
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 1304
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variant carriers: 0

GenotypeDepth
all individuals: 5065
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variant carriers: 0

GenotypeQuality
all individuals: 3027
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 3166
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2907
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41815
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500180007200288e-5
allele num: 66664
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

DP
type: SiteQuality
SIO_000300: 3.762576e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.308e0

VQSLOD
type: SiteQuality
SIO_000300: -5.94e-1

FS
type: SiteQuality
SIO_000300: 8.704000000000001e0

QD
type: SiteQuality
SIO_000300: 1.266e1

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

GenotypeDepth
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
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variant carriers: 0

GenotypeDepth
all individuals: 5065
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2329
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 770
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

DP
type: SiteQuality
SIO_000300: 3.762307e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 8.831e0

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 2.48e0

MQRankSum
type: SiteQuality
SIO_000300: -1.162e0

QD
type: SiteQuality
SIO_000300: 1.346e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

GenotypeDepth
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bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1739
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variant carriers: 0

GenotypeDepth
all individuals: 5184
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2329
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
all individuals: 79
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41809
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923076923076923e-4
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.557e1

FS
type: SiteQuality
SIO_000300: 5.003e0

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
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SIO_000300: 9.379999999999999e-1

ReadPosRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 8.1e-3

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 3.76209e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 6
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -4.12e-1

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

QD
type: SiteQuality
SIO_000300: 1.458e1

GenotypeDepth
all individuals: 6943
bin: 4.25e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

FS
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MQ
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QD
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BaseQRankSum
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MQRankSum
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SIO_000300: -2.27e-1

VQSLOD
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ReadPosRankSum
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DP
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SIO_000300: 3.759991e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.001140216641162e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.756125e6

FS
type: SiteQuality
SIO_000300: 4.082e0

ClippingRankSum
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SIO_000300: 1.02e-1

BaseQRankSum
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SIO_000300: 4.99e0

MQRankSum
type: SiteQuality
SIO_000300: -9.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.554e-1

QD
type: SiteQuality
SIO_000300: 1.725e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

FS
type: SiteQuality
SIO_000300: 3.821e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

QD
type: SiteQuality
SIO_000300: 1.314e1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
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SIO_000300: -1.911e0

DP
type: SiteQuality
SIO_000300: 3.255181e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.77e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 3.255181e6

FS
type: SiteQuality
SIO_000300: 3.821e0

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.911e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
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num of homozygotes: 0

Other
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

VQSLOD
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.911e0

FS
type: SiteQuality
SIO_000300: 3.821e0

MQRankSum
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SIO_000300: -1.04e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
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East Asian
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allele count: 0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.256959e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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Other
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
type: Population
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South Asian
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.257421e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.040816326530612e-4
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 1
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allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.048972007432716e-4
allele num: 66732
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.7e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.257877e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 11
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.257869e6

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.998e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele num: 898
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DP
type: SiteQuality
SIO_000300: 3.257869e6

MQ
type: SiteQuality
SIO_000300: 5.998e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.502e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 1.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 3.895948213857588e-4
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.050129645635263e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

QD
type: SiteQuality
SIO_000300: 1.319e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

DP
type: SiteQuality
SIO_000300: 3.259277e6

GenotypeQuality
all individuals: 1732
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

DP
type: SiteQuality
SIO_000300: 3.258975e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.422e1

VQSLOD
type: SiteQuality
SIO_000300: -1.391e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.924e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.039e0

FS
type: SiteQuality
SIO_000300: 3.979e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e0

GenotypeQuality
all individuals: 1034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.502e-1

FS
type: SiteQuality
SIO_000300: 4.733e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

QD
type: SiteQuality
SIO_000300: 1.535e1

DP
type: SiteQuality
SIO_000300: 3.259001e6

GenotypeQuality
all individuals: 1275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

FS
type: SiteQuality
SIO_000300: 1.0254e1

VQSLOD
type: SiteQuality
SIO_000300: -1.406e0

DP
type: SiteQuality
SIO_000300: 3.259425e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.767e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.06e-1

GenotypeQuality
all individuals: 1458
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.225e0

DP
type: SiteQuality
SIO_000300: 3.259435e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.417e0

FS
type: SiteQuality
SIO_000300: 1.971e0

MQRankSum
type: SiteQuality
SIO_000300: -1.398e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 7.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.812e0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2223
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 3.259534e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 1.923e0

VQSLOD
type: SiteQuality
SIO_000300: 9.17e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
all individuals: 50518
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 3.259525e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.187e0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50518
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.595e0

QD
type: SiteQuality
SIO_000300: 1.128e1

DP
type: SiteQuality
SIO_000300: 3.259511e6

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

GenotypeQuality
all individuals: 50518
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 853
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.433e0

MQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.218e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
SIO_000300: 1.462e1

DP
type: SiteQuality
SIO_000300: 3.259485e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

QD
type: SiteQuality
SIO_000300: 8.82e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

FS
type: SiteQuality
SIO_000300: 9.294e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 3.259662e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.261e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 3.259522e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.289e0

FS
type: SiteQuality
SIO_000300: 3.076e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.137e1

GenotypeQuality
all individuals: 1734
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 3.259653e6

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 4.123e0

QD
type: SiteQuality
SIO_000300: 1.538e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

GenotypeQuality
all individuals: 50519
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.25955e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.822e0

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

FS
type: SiteQuality
SIO_000300: 3.022e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 8.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50519
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

QD
type: SiteQuality
SIO_000300: 8.67e0

MQRankSum
type: SiteQuality
SIO_000300: 7.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.508e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

DP
type: SiteQuality
SIO_000300: 3.259494e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

QD
type: SiteQuality
SIO_000300: 1.123e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-1

FS
type: SiteQuality
SIO_000300: 1.251e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 3.259572e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 138
allele frequency: 2.086483217417599e-2
allele num: 6614
num of homozygotes: 4

Latino
type: Population
allele count: 227
allele frequency: 1.960953697304768e-2
allele num: 11576
num of homozygotes: 4

African
type: Population
allele count: 1503
allele frequency: 1.533986527862829e-1
allele num: 9798
num of homozygotes: 118

East Asian
type: Population
allele count: 566
allele frequency: 6.564602180468569e-2
allele num: 8622
num of homozygotes: 22

Other
type: Population
allele count: 31
allele frequency: 3.452115812917594e-2
allele num: 898
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1301
allele frequency: 1.949355708720408e-2
allele num: 66740
num of homozygotes: 12

South Asian
type: Population
allele count: 598
allele frequency: 3.621608527131783e-2
allele num: 16512
num of homozygotes: 13

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 3.480483e6

VQSLOD
type: SiteQuality
SIO_000300: 4.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 1.234e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

DP
type: SiteQuality
SIO_000300: 3.281249e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.577e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 3.281834e6

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 1.292e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.34075723830735e-3
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

FS
type: SiteQuality
SIO_000300: 1.292e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.577e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 3.281834e6

GenotypeQuality
all individuals: 849
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50585
bin: 9.75e1
variant carriers: 18

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.689922480620155e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.040816326530612e-4
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 3.281339e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

FS
type: SiteQuality
SIO_000300: 4.205e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

QD
type: SiteQuality
SIO_000300: 1.231e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50578
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.280849e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

FS
type: SiteQuality
SIO_000300: 5.113e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.375e0

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50578
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.113e0

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.375e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 3.280849e6

MQ
type: SiteQuality
SIO_000300: 5.935e1

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeQuality
all individuals: 50579
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.040816326530612e-4
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.246e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

FS
type: SiteQuality
SIO_000300: 3.432e0

VQSLOD
type: SiteQuality
SIO_000300: 7.08e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

DP
type: SiteQuality
SIO_000300: 3.280691e6

QD
type: SiteQuality
SIO_000300: 2.393e1

GenotypeQuality
all individuals: 1187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 3.280399e6

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.622e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 6.787e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

GenotypeQuality
all individuals: 2228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

DP
type: SiteQuality
SIO_000300: 3.280331e6

VQSLOD
type: SiteQuality
SIO_000300: -2.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQRankSum
type: SiteQuality
SIO_000300: -1.161e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

FS
type: SiteQuality
SIO_000300: 6.316e0

QD
type: SiteQuality
SIO_000300: 1.377e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 3.28074e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

FS
type: SiteQuality
SIO_000300: 6.59e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.94803248718794e-4
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

DP
type: SiteQuality
SIO_000300: 3.28074e6

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

QD
type: SiteQuality
SIO_000300: 1.363e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1701
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

FS
type: SiteQuality
SIO_000300: 5.11e0

VQSLOD
type: SiteQuality
SIO_000300: -2.701e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.776e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

DP
type: SiteQuality
SIO_000300: 3.280142e6

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

QD
type: SiteQuality
SIO_000300: 2.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.629e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 3.280092e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50576
bin: 9.75e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

FS
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.436e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.52e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.51e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 3.280112e6

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

GenotypeQuality
all individuals: 845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 3.279827e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

FS
type: SiteQuality
SIO_000300: 6.813e0

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 5.12e0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526670941345302e-5
allele num: 65502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.09e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

FS
type: SiteQuality
SIO_000300: 6.98e-1

DP
type: SiteQuality
SIO_000300: 1.60337e6

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.623e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 1709
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2673
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524390243902439e-5
allele num: 65600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.905123601712471e-5
allele num: 14482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.991e0

VQSLOD
type: SiteQuality
SIO_000300: -3.052e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

DP
type: SiteQuality
SIO_000300: 1.614504e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 2.5e0