7-99674947-GTTCCTGAGATACGAGATCAGCCTGAGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99674947
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99674920
    reference: chr 7
allele count: 3
allele frequency: 2.485501242750621e-5
allele num: 120700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsp: ENSP00000388042.1:p.Thr3_Glu11del
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsp: ENSP00000416686.1:p.Thr3_Glu11del
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsp: ENSP00000399951.2:p.Thr3_Glu11del
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsp: ENSP00000405970.1:p.Thr3_Glu11del
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsp: ENSP00000415358.1:p.Thr3_Glu11del
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsp: ENSP00000306372.6:p.Thr3_Glu11del
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsp: ENSP00000299667.4:p.Thr3_Glu11del
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr3_Glu11del
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: GTTCCTGAGATACGAGATCAGCCTGAGT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

7-99674955-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99674955
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99674955
    reference: chr 7
allele count: 2
allele frequency: 1.657138122462507e-5
allele num: 120690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.26C>T
  hgvsp: ENSP00000416686.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1702C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.179C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.292C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.26C>T
  hgvsp: ENSP00000299667.4:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.26C>T
  hgvsp: ENSP00000306372.6:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-157C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.26C>T
  hgvsp: ENSP00000399951.2:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.26C>T
  hgvsp: ENSP00000405970.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.26C>T
  hgvsp: ENSP00000388042.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1702C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.326C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1702C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.26C>T
  hgvsp: ENSP00000415358.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.214C>T
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser9Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

7-99674959-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99674959
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99674959
    reference: chr 7
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.22G>C
  hgvsp: ENSP00000306372.6:p.Val8Leu
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.210G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.288G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.22G>C
  hgvsp: ENSP00000388042.1:p.Val8Leu
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.175G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.322G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.22G>C
  hgvsp: ENSP00000299667.4:p.Val8Leu
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.22G>C
  hgvsp: ENSP00000415358.1:p.Val8Leu
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.22G>C
  hgvsp: ENSP00000405970.1:p.Val8Leu
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.22G>C
  hgvsp: ENSP00000399951.2:p.Val8Leu
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.22G>C
  hgvsp: ENSP00000416686.1:p.Val8Leu
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1706G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-161G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1706G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1706G>C
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val8Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-99674960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99674960
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99674960
    reference: chr 7
allele count: 4
allele frequency: 3.314386092835955e-5
allele num: 120686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.209C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.21C>T
  hgvsp: ENST00000299667.4:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-162C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.21C>T
  hgvsp: ENST00000303915.6:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.21C>T
  hgvsp: ENST00000424697.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1707C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.174C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.321C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1707C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1707C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.21C>T
  hgvsp: ENST00000428683.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.21C>T
  hgvsp: ENST00000415068.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.21C>T
  hgvsp: ENST00000413658.2:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.287C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.21C>T
  hgvsp: ENST00000449785.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu7Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

7-99674962-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99674962
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99674962
    reference: chr 7
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1709C>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.19C>A
  hgvsp: ENSP00000388042.1:p.Leu7Ile
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.19C>A
  hgvsp: ENSP00000405970.1:p.Leu7Ile
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.285C>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-164C>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.207C>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.19C>A
  hgvsp: ENSP00000399951.2:p.Leu7Ile
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.19C>A
  hgvsp: ENSP00000299667.4:p.Leu7Ile
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.172C>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.19C>A
  hgvsp: ENSP00000416686.1:p.Leu7Ile
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1709C>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.19C>A
  hgvsp: ENSP00000306372.6:p.Leu7Ile
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.319C>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.19C>A
  hgvsp: ENSP00000415358.1:p.Leu7Ile
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1709C>A
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu7Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

7-99674970-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99674970
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99674970
    reference: chr 7
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.199A>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.11A>C
  hgvsp: ENSP00000415358.1:p.Gln4Pro
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.11A>C
  hgvsp: ENSP00000416686.1:p.Gln4Pro
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.11A>C
  hgvsp: ENSP00000299667.4:p.Gln4Pro
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.11A>C
  hgvsp: ENSP00000399951.2:p.Gln4Pro
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.11A>C
  hgvsp: ENSP00000306372.6:p.Gln4Pro
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.11A>C
  hgvsp: ENSP00000405970.1:p.Gln4Pro
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.164A>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.11A>C
  hgvsp: ENSP00000388042.1:p.Gln4Pro
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.277A>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1717A>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1717A>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.311A>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1717A>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-172A>C
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln4Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-99674990-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99674990
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99674990
    reference: chr 7
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.291T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1737T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.144T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-10T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.257T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1737T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-10T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-192T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.179T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1737T>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-10T>G
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-99674997-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99674997
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99674997
    reference: chr 7
allele count: 152
allele frequency: 1.259696346880594e-3
allele num: 120664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-17G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1744G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-17G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-199G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-17G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-17G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-17G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.172G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-17G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1744G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.284G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-17G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1744G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.250G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.137G>A
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 2
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

7-99674999-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99674999
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99674999
    reference: chr 7
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.282G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-19G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1746G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.135G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-19G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-19G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-19G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-19G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1746G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.170G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1746G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-201G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.248G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-19G>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-19G>C
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

7-99675007-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99675007
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99675007
    reference: chr 7
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-209G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-27G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1754G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.127G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-27G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.274G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-27G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1754G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.240G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1754G>A
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.162G>A
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

7-99675008-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99675008
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99675008
    reference: chr 7
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-28A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-210A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1755A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-28A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.126A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.239A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-28A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1755A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1755A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.161A>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.273A>G
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

7-99675010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99675010
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99675010
    reference: chr 7
allele count: 5
allele frequency: 4.143875352229405e-5
allele num: 120660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-30C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-30C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.237C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-30C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-212C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-30C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-30C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-30C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-30C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.271C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1757C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.124C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.159C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1757C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1757C>T
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

7-99675021-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99675021
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99675021
    reference: chr 7
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-41T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.226T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.148T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.113T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1768T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-41T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-223T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1768T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.260T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-41T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1768T>C
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-99675024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99675024
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99675024
    reference: chr 7
allele count: 4
allele frequency: 3.316144650229643e-5
allele num: 120622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-226C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-44C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.145C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-44C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1771C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1771C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1771C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.110C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.223C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.257C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-44C>T
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

7-99675031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99675031
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99675031
    reference: chr 7
allele count: 2
allele frequency: 1.658952537367906e-5
allele num: 120558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-233C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-51C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-51C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1778C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.216C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.250C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1778C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.103C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.138C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-51C>T
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1778C>T
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

7-99675032-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99675032
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99675032
    reference: chr 7
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000460331
  gene symbol: ZNF3
  hgvsc: ENST00000460331.1:n.137C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000306372
  ensembl transcript: ENST00000303915
  gene symbol: ZNF3
  hgvsc: ENST00000303915.6:c.-52C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000292393
  ensembl transcript: ENST00000292393
  gene symbol: ZNF3
  hgvsc: ENST00000292393.5:c.-234C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000299667
  ensembl transcript: ENST00000299667
  gene symbol: ZNF3
  hgvsc: ENST00000299667.4:c.-52C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000415358
  ensembl transcript: ENST00000424697
  gene symbol: ZNF3
  hgvsc: ENST00000424697.1:c.-52C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416686
  ensembl transcript: ENST00000415068
  gene symbol: ZNF3
  hgvsc: ENST00000415068.1:c.-52C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000388042
  ensembl transcript: ENST00000428683
  gene symbol: ZNF3
  hgvsc: ENST00000428683.1:c.-52C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000479192
  gene symbol: ZNF3
  hgvsc: ENST00000479192.1:n.249C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000487620
  gene symbol: ZNF3
  hgvsc: ENST00000487620.1:n.129-1779C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000399951
  ensembl transcript: ENST00000413658
  gene symbol: ZNF3
  hgvsc: ENST00000413658.2:c.-52C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000416088
  ensembl transcript: ENST00000412947
  gene symbol: ZNF3
  hgvsc: ENST00000412947.1:c.-53-1779C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000394113
  ensembl transcript: ENST00000441298
  gene symbol: ZNF3
  hgvsc: ENST00000441298.1:c.-53-1779C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166526
  ensembl protein: ENSP00000405970
  ensembl transcript: ENST00000449785
  gene symbol: ZNF3
  hgvsc: ENST00000449785.1:c.-52C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000466121
  gene symbol: ZNF3
  hgvsc: ENST00000466121.1:n.102C>G
  variant of: http://identifiers.org/hgnc/13089
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166526
  ensembl transcript: ENST00000485892
  gene symbol: ZNF3
  hgvsc: ENST00000485892.1:n.215C>G
  variant of: http://identifiers.org/hgnc/13089
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

7-99686615-T-TGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686615
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686618
    reference: chr 7
allele count: 1
allele frequency: 3.541076487252125e-4
allele num: 2824
alternate allele: TGGC
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.21_23dupGGC
  hgvsp: ENSP00000304102.3:p.Ala8dup
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.19_21dupGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.22_24dupGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-57_-55dupGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.21_23dupGGC
  hgvsp: ENSP00000400617.1:p.Ala8dup
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.43_45dupGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.30_32dupGGC
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4479
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala8dup
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

7-99686615-T-TGGCGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686615
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686621
    reference: chr 7
allele count: 12
allele frequency: 4.24929178470255e-3
allele num: 2824
alternate allele: TGGCGGC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.40_45dupGGCGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.16_21dupGGCGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.19_24dupGGCGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.27_32dupGGCGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-60_-55dupGGCGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.18_23dupGGCGGC
  hgvsp: ENSP00000304102.3:p.Ala7_Ala8dup
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.18_23dupGGCGGC
  hgvsp: ENSP00000400617.1:p.Ala7_Ala8dup
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23262
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19501
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala7_Ala8dup
num of homozygotes: 1
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-99686615-TGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686615
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686612
    reference: chr 7
allele count: 2
allele frequency: 7.08215297450425e-4
allele num: 2824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.30_32delGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.19_21delGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-57_-55delGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.43_45delGGC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.21_23delGGC
  hgvsp: ENSP00000304102.3:p.Ala10del
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.21_23delGGC
  hgvsp: ENSP00000400617.1:p.Ala10del
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.22_24delGGC
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23262
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala10del
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TGGC
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

7-99686618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686618
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686618
    reference: chr 7
allele count: 1
allele frequency: 5.241090146750524e-4
allele num: 1908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.14C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.3C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.5C>T
  hgvsp: ENSP00000400617.1:p.Ala2Val
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.5C>T
  hgvsp: ENSP00000304102.3:p.Ala2Val
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.6C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.27C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-73C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7627
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala2Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

7-99686628-G-GGCGGCGGCGGCGGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686628
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686643
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 3858
alternate allele: GGCGGCGGCGGCGGCT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsp: ENSP00000304102.3:p.Ala4_Ala8dup
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsp: ENSP00000400617.1:p.Ala4_Ala8dup
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: inframe insertion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23810
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3997
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala4_Ala8dup
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-99686631-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686631
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686631
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 4242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.27G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.18G>A
  hgvsp: ENST00000418625.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-60G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.16G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.40G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.18G>A
  hgvsp: ENST00000303904.3:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.19G>A
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala6Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

7-99686646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686646
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686646
    reference: chr 7
allele count: 1
allele frequency: 1.747640685075148e-4
allele num: 5722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.42G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.34G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.55G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-45G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.33G>A
  hgvsp: ENST00000303904.3:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.33G>A
  hgvsp: ENST00000418625.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.31G>A
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr11Thr
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

7-99686646-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686646
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686646
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 5722
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.33G>T
  hgvsp: ENST00000303904.3:c.33G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.31G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-45G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.55G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.34G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.33G>T
  hgvsp: ENST00000418625.1:c.33G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.42G>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr11Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-99686668-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686668
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686668
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 7318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.56G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.64G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.77G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.55G>A
  hgvsp: ENSP00000400617.1:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.53G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.55G>A
  hgvsp: ENSP00000304102.3:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31231
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly19Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

7-99686702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686702
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686702
    reference: chr 7
allele count: 2
allele frequency: 2.475247524752475e-4
allele num: 8080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.76+13G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.76+13G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.85+13G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.98+13G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.74+13G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-15+26G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.77+13G>A
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

7-99686713-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686713
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686713
    reference: chr 7
allele count: 1
allele frequency: 1.195314367678699e-4
allele num: 8366
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.76+24T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.85+24T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.76+24T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.74+24T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.77+24T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-15+37T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.98+24T>C
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

7-99686722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686722
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686722
    reference: chr 7
allele count: 18
allele frequency: 2.055263758849052e-3
allele num: 8758
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.76+33C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.85+33C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-15+46C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.77+33C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.74+33C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.76+33C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.98+33C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37503
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8737
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34862
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

7-99686873-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686873
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686873
    reference: chr 7
allele count: 5
allele frequency: 4.192661165895217e-5
allele num: 119256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.99-40G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.75-40G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.86-40G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-14-40G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.77-43G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.77-40G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.78-40G>C
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10924
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

7-99686873-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686873
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686873
    reference: chr 7
allele count: 33054
allele frequency: 2.77168444355001e-1
allele num: 119256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.86-40G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.78-40G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.99-40G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.75-40G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.77-43G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.77-40G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-14-40G>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 380
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 1.75e1
  variant carriers: 1058
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 338
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.25e1
  variant carriers: 435
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 6.25e1
  variant carriers: 1371
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 5.75e1
  variant carriers: 1055
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.25e1
  variant carriers: 616
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 5.25e1
  variant carriers: 780
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 8.25e1
  variant carriers: 2050
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 7.25e1
  variant carriers: 1858
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 1.25e1
  variant carriers: 1010
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.75e1
  variant carriers: 608
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 8.75e1
  variant carriers: 2088
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 6.75e1
  variant carriers: 1587
genotype depth: GenotypeDepth
  all individuals: 10924
  bin: 9.75e1
  variant carriers: 8467
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.75e1
  variant carriers: 1998
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.25e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 9.25e1
  variant carriers: 1925
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 6.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.75e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 2.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 45
num of homozygotes: 5188
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

7-99686876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686876
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686876
    reference: chr 7
allele count: 3
allele frequency: 2.511721366376423e-5
allele num: 119440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-14-37C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.86-37C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.78-37C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.99-37C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.77-40C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.75-37C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.77-37C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46657
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

7-99686882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686882
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686882
    reference: chr 7
allele count: 1
allele frequency: 8.356592515835743e-6
allele num: 119666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.77-34C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.77-31C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.75-31C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-14-31C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.99-31C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.86-31C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.78-31C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46653
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

7-99686894-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686894
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686894
    reference: chr 7
allele count: 1
allele frequency: 8.317530026283395e-6
allele num: 120228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.86-19C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.77-22C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.75-19C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.78-19C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-14-19C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.77-19C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.99-19C>G
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

7-99686894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686894
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686894
    reference: chr 7
allele count: 1
allele frequency: 8.317530026283395e-6
allele num: 120228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.86-19C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.77-22C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.75-19C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.78-19C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.99-19C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-14-19C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.77-19C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

7-99686895-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686895
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686895
    reference: chr 7
allele count: 1
allele frequency: 8.313934153641504e-6
allele num: 120280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.78-18C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.77-21C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.99-18C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.77-18C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.86-18C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-14-18C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.75-18C>G
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

7-99686900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686900
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686900
    reference: chr 7
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.78-13C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.77-13C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.86-13C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.99-13C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.77-16C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.75-13C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-14-13C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-99686911-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686911
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686911
    reference: chr 7
allele count: 1
allele frequency: 8.267879288962381e-6
allele num: 120950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.75-2A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.99-2A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.77-5A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.78-2A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.77-2A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-14-2A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.86-2A>G
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
hgvs: c.77-2A>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/7-99686917-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686917
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686917
    reference: chr 7
allele count: 2
allele frequency: 1.651418568550385e-5
allele num: 121108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.103C>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.81C>A
  hgvsp: ENST00000303904.3:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.90C>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-10C>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.78C>A
  hgvsp: ENST00000418625.1:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.82C>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.79C>A
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46664
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
hgvs: c.78C>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-99686918-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686918
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686918
    reference: chr 7
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.83C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.80C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.82C>T
  hgvsp: ENSP00000304102.3:p.Pro28Ser
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.91C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.79C>T
  hgvsp: ENSP00000400617.1:p.Pro27Ser
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.104C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro28Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

7-99686924-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686924
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686924
    reference: chr 7
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.86G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.-3G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.88G>T
  hgvsp: ENSP00000304102.3:p.Val30Leu
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.97G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.85G>T
  hgvsp: ENSP00000400617.1:p.Val29Leu
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.110G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.89G>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val30Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

7-99686935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686935
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686935
    reference: chr 7
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.96C>T
  hgvsp: ENST00000418625.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.121C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.9C>T
  hgvsp: ENST00000419210.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.100C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.99C>T
  hgvsp: ENST00000303904.3:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.97C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.108C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Cys33Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-99686938-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686938
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686938
    reference: chr 7
allele count: 5
allele frequency: 4.120992334954257e-5
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.124A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.100A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.99A>C
  hgvsp: ENST00000418625.1:c.99A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.111A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.12A>C
  hgvsp: ENST00000419210.1:c.12A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.103A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.102A>C
  hgvsp: ENST00000303904.3:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46704
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly34Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

7-99686956-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686956
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686956
    reference: chr 7
allele count: 4
allele frequency: 3.295924589245398e-5
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.120C>G
  hgvsp: ENST00000303904.3:c.120C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.129C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.117C>G
  hgvsp: ENST00000418625.1:c.117C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.30C>G
  hgvsp: ENST00000419210.1:c.30C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.121C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.118C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.142C>G
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser40Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-99686965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686965
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686965
    reference: chr 7
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.130C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.39C>T
  hgvsp: ENST00000419210.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.138C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.129C>T
  hgvsp: ENST00000303904.3:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.126C>T
  hgvsp: ENST00000418625.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.151C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.127C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46704
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu43Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

7-99686974-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686974
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686974
    reference: chr 7
allele count: 4
allele frequency: 3.295435821387378e-5
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.136T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.48T>C
  hgvsp: ENST00000419210.1:c.48T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.160T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.135T>C
  hgvsp: ENST00000418625.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.147T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.138T>C
  hgvsp: ENST00000303904.3:c.138T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.139T>C
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46706
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu46Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

7-99686986-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99686986
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99686986
    reference: chr 7
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.150C>T
  hgvsp: ENST00000303904.3:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.159C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.172C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.147C>T
  hgvsp: ENST00000418625.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.60C>T
  hgvsp: ENST00000419210.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.148C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.151C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn50Asn
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

7-99687004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687004
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687004
    reference: chr 7
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.169C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.168C>T
  hgvsp: ENST00000303904.3:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.177C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.166C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.165C>T
  hgvsp: ENST00000418625.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.190C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.78C>T
  hgvsp: ENST00000419210.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5677
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46706
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile56Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-99687021-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687021
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687021
    reference: chr 7
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.207A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.186A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.194A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.182A>G
  hgvsp: ENSP00000400617.1:p.Glu61Gly
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.183A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.95A>G
  hgvsp: ENSP00000388865.1:p.Glu32Gly
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.185A>G
  hgvsp: ENSP00000304102.3:p.Glu62Gly
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5663
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46706
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu62Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

7-99687028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687028
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687028
    reference: chr 7
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.102G>A
  hgvsp: ENST00000419210.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.190G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.192G>A
  hgvsp: ENST00000303904.3:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.189G>A
  hgvsp: ENST00000418625.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.201G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.214G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.193G>A
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46706
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg64Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

7-99687028-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687028
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687028
    reference: chr 7
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.192G>C
  hgvsp: ENST00000303904.3:c.192G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.190G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.189G>C
  hgvsp: ENST00000418625.1:c.189G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.214G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.193G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.102G>C
  hgvsp: ENST00000419210.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.201G>C
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46706
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5638
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg64Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

7-99687042-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687042
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687042
    reference: chr 7
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.228A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+4A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+4A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+4A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+4A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+4A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+4A>G
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46706
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.202+4A>G
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

7-99687049-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687049
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687049
    reference: chr 7
allele count: 85
allele frequency: 7.003031900870023e-4
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+11G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+11G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.235G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+11G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+11G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+11G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+11G>A
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 9.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

7-99687050-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687050
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687050
    reference: chr 7
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+12G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+12G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+12G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+12G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.236G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+12G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+12G>A
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

7-99687052-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687052
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687052
    reference: chr 7
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+14A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+14A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+14A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.238A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+14A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+14A>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+14A>G
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

7-99687055-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687055
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687055
    reference: chr 7
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+17G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+17G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+17G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+17G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+17G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.241G>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+17G>T
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/7-99687061-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687061
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687061
    reference: chr 7
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+23A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+23A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+23A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+23A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.247A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+23A>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+23A>C
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5519
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

7-99687068-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687068
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687065
    reference: chr 7
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.257_259delCCT
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+33_199+35delCCT
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+33_202+35delCCT
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+33_200+35delCCT
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+33_112+35delCCT
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+33_211+35delCCT
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+33_203+35delCCT
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5375
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TCTC
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

7-99687072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687072
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687072
    reference: chr 7
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+34C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+34C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.258C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+34C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+34C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+34C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+34C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-99687080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687080
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687080
    reference: chr 7
allele count: 91
allele frequency: 7.499093516168375e-4
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+42C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+42C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+42C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+42C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.266C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+42C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+42C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

7-99687083-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687083
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687083
    reference: chr 7
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+45C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+45C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.269C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+45C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+45C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+45C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+45C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

7-99687087-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687087
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687087
    reference: chr 7
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.112+49C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.203+49C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.211+49C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.199+49C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.202+49C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.273C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.200+49C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

7-99687200-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687200
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687200
    reference: chr 7
allele count: 1
allele frequency: 8.309650828472188e-6
allele num: 120342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.113-38C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.201-38C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.386C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.203-38C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.212-38C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.204-38C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.200-38C>G
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

7-99687211-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687211
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687211
    reference: chr 7
allele count: 1
allele frequency: 8.30813199960121e-6
allele num: 120364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.200-27C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.113-27C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.397C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.204-27C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.203-27C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.201-27C>G
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.212-27C>G
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

7-99687216-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687216
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687215
    reference: chr 7
allele count: 1
allele frequency: 8.302751531857658e-6
allele num: 120442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.200-20delC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.113-20delC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.201-20delC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.404delC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.203-20delC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.212-20delC
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.204-20delC
  variant of: http://identifiers.org/hgnc/21749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: TC
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

7-99687232-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687232
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687232
    reference: chr 7
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.200-6T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.204-6T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.212-6T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.418T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.203-6T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000388865
  ensembl transcript: ENST00000419210
  gene symbol: COPS6
  hgvsc: ENST00000419210.1:c.113-6T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.201-6T>C
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19496
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.25e1
  variant carriers: 0
hgvs: c.203-6T>C
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

7-99687251-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687251
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687251
    reference: chr 7
allele count: 2
allele frequency: 1.652728655009421e-5
allele num: 121012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.214G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.213G>C
  hgvsp: ENST00000418625.1:c.213G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.437G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.216G>C
  hgvsp: ENST00000303904.3:c.216G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.217G>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.225G>C
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu72Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

7-99687253-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687253
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687253
    reference: chr 7
allele count: 1
allele frequency: 8.261458643138033e-6
allele num: 121044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.219T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.216T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.227T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.215T>C
  hgvsp: ENSP00000400617.1:p.Ile72Thr
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.439T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.218T>C
  hgvsp: ENSP00000304102.3:p.Ile73Thr
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile73Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

7-99687264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687264
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687264
    reference: chr 7
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.229G>A
  hgvsp: ENSP00000304102.3:p.Glu77Lys
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.227G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.450G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.230G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.238G>A
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.226G>A
  hgvsp: ENSP00000400617.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38626
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu77Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

7-99687275-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687275
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687275
    reference: chr 7
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.241T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.240T>C
  hgvsp: ENST00000303904.3:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.249T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.237T>C
  hgvsp: ENST00000418625.1:c.237T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.238T>C
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.461T>C
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38901
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn80Asn
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

7-99687293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99687293
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99687293
    reference: chr 7
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000304102
  ensembl transcript: ENST00000303904
  gene symbol: COPS6
  hgvsc: ENST00000303904.3:c.258C>T
  hgvsp: ENST00000303904.3:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000496358
  gene symbol: COPS6
  hgvsc: ENST00000496358.1:n.256C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000465027
  gene symbol: COPS6
  hgvsc: ENST00000465027.1:n.479C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000472107
  gene symbol: COPS6
  hgvsc: ENST00000472107.1:n.267C>T
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168090
  ensembl protein: ENSP00000400617
  ensembl transcript: ENST00000418625
  gene symbol: COPS6
  hgvsc: ENST00000418625.1:c.255C>T
  hgvsp: ENST00000418625.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168090
  ensembl transcript: ENST00000468499
  gene symbol: COPS6
  hgvsc: ENST00000468499.1:n.259C>T
  variant of: http://identifiers.org/hgnc/21749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser86Ser
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 2662
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2772
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5133
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6764
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7222
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3542
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42095
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.068e0

FS
type: SiteQuality
SIO_000300: 1.8732e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.751e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

QD
type: SiteQuality
SIO_000300: 9.2e-1

DP
type: SiteQuality
SIO_000300: 3.116059e6

MQ
type: SiteQuality
SIO_000300: 5.339e1

GenotypeDepth
all individuals: 5525
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3372
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7809
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1535
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2662
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2772
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7878
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42094
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998320940273447e-5
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.136e0

DP
type: SiteQuality
SIO_000300: 3.115864e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

MQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.933e0

GenotypeDepth
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1940
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6764
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3370
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7221
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 610
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42094
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.992e1

MQRankSum
type: SiteQuality
SIO_000300: 6.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

QD
type: SiteQuality
SIO_000300: 1.02e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

FS
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 3.115871e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeDepth
all individuals: 1050
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6764
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7220
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1940
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 610
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3666
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2775
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 94
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42096
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 4.202e0

DP
type: SiteQuality
SIO_000300: 3.115964e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

GenotypeDepth
all individuals: 7807
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5135
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1050
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5523
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1940
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1444
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7220
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2773
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2629
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42095
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.878e1

FS
type: SiteQuality
SIO_000300: 6.514e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.003e0

QD
type: SiteQuality
SIO_000300: 1.229e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.503e0

DP
type: SiteQuality
SIO_000300: 3.115745e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

GenotypeDepth
all individuals: 6766
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7879
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7220
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1444
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3362
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2772
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5522
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42095
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3507
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.436e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

DP
type: SiteQuality
SIO_000300: 3.115437e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.74e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 1.0638e1

QD
type: SiteQuality
SIO_000300: 1.064e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.467e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

GenotypeDepth
all individuals: 1050
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 172
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7881
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1940
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1444
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3666
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 610
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42094
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.362e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

FS
type: SiteQuality
SIO_000300: 1.853e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 3.114467e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.444e0

GenotypeDepth
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7789
bin: 4.75e1
variant carriers: 3

GenotypeDepth
all individuals: 5503
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2810
bin: 9.75e1
variant carriers: 48

GenotypeDepth
all individuals: 1401
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6757
bin: 5.25e1
variant carriers: 10

GenotypeDepth
all individuals: 5138
bin: 5.75e1
variant carriers: 10

GenotypeDepth
all individuals: 3661
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42128
bin: 9.75e1
variant carriers: 150

GenotypeQuality
all individuals: 2960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3411
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3356
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 6.049083995852057e-4
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 51
allele frequency: 3.091283791974785e-3
allele num: 16498
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.814333232537043e-3
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 82
allele frequency: 1.22964340341301e-3
allele num: 66686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

DP
type: SiteQuality
SIO_000300: 3.119646e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.263e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

QD
type: SiteQuality
SIO_000300: 1.354e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

GenotypeDepth
all individuals: 612
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2665
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7799
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5513
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5140
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2771
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1938
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42080
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3363
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2966
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023122570083896e-4
allele num: 9774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.367e0

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 3.114128e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.982e0

QD
type: SiteQuality
SIO_000300: 1.175e1

FS
type: SiteQuality
SIO_000300: 3.067e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 6768
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7799
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7236
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1938
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1448
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42081
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3363
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: -1.256e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 7.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

FS
type: SiteQuality
SIO_000300: 1.419e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 3.113721e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.4e0

GenotypeDepth
all individuals: 3307
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2770
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6768
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5508
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2665
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1939
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 832
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3363
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42080
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3373
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

DP
type: SiteQuality
SIO_000300: 3.113665e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.933e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

QD
type: SiteQuality
SIO_000300: 1.032e1

GenotypeDepth
all individuals: 5509
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2771
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2665
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6767
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42079
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2623
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3353
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3363
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.998980173370527e-5
allele num: 66678
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 3.113536e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 8.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeDepth
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7204
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6768
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5435
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 833
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3125
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3363
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42079
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 3.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

VQSLOD
type: SiteQuality
SIO_000300: 5.79e-1

DP
type: SiteQuality
SIO_000300: 3.108901e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

GenotypeDepth
all individuals: 7800
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 613
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 833
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7865
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2768
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2665
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1450
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3664
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2944
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42072
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000210014701029e-5
allele num: 66662
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.84e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.427e0

DP
type: SiteQuality
SIO_000300: 3.108773e6

GenotypeDepth
all individuals: 1467
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7839
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 440
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6763
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7790
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1937
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42056
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1818
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 5.905e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

DP
type: SiteQuality
SIO_000300: 3.105304e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeDepth
all individuals: 5278
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2664
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3666
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2768
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7789
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3211
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1449
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42074
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2937
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.105276e6

VQSLOD
type: SiteQuality
SIO_000300: 7.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.173e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.313e0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19501
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.90625e-3
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 1.08029e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQ
type: SiteQuality
SIO_000300: 5.051e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.964e-1

GenotypeQuality
all individuals: 354
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.846153846153846e-2
allele num: 26
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.2531328320802e-3
allele num: 1596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 3.515625e-2
allele num: 256
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 5.051e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.08029e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.964e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.756756756756757e-3
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.265664160401002e-4
allele num: 1596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

DP
type: SiteQuality
SIO_000300: 1.08029e5

MQ
type: SiteQuality
SIO_000300: 5.051e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.964e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 64
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14538
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.671179883945841e-4
allele num: 1034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.59e0

DP
type: SiteQuality
SIO_000300: 1.00156e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.656e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.133e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.552e1

GenotypeQuality
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2140
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.420000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.08765e5

MQ
type: SiteQuality
SIO_000300: 4.331e1

QD
type: SiteQuality
SIO_000300: 4.59e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20886
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2384
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.13545e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.863e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

QD
type: SiteQuality
SIO_000300: 5.16e0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.41025641025641e-4
allele num: 1560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.43226e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

QD
type: SiteQuality
SIO_000300: 1.403e1

MQ
type: SiteQuality
SIO_000300: 5.871e1

VQSLOD
type: SiteQuality
SIO_000300: 9.44e-1

GenotypeQuality
all individuals: 1742
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 9.44e-1

QD
type: SiteQuality
SIO_000300: 1.403e1

MQ
type: SiteQuality
SIO_000300: 5.871e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

DP
type: SiteQuality
SIO_000300: 1.43226e5

GenotypeQuality
all individuals: 3424
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27845
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.71415e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 1.029e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.78e-2

GenotypeQuality
all individuals: 2100
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 9.861932938856016e-4
allele num: 2028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.54e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.876e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.698e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

DP
type: SiteQuality
SIO_000300: 2.13942e5

GenotypeQuality
all individuals: 35565
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.830917874396135e-4
allele num: 2070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 2.36153e5

VQSLOD
type: SiteQuality
SIO_000300: -7.304e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 281
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 233
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2524
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 98
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.388888888888889e-2
allele num: 72
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 8.064516129032258e-3
allele num: 2108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.306e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 2.65366e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.41e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.251e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
all individuals: 453
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51943
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15184
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.826254826254826e-4
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.978e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

DP
type: SiteQuality
SIO_000300: 4.159235e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.98e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

QD
type: SiteQuality
SIO_000300: 1.651e1

VQSLOD
type: SiteQuality
SIO_000300: 7.06e0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 68

GenotypeQuality
all individuals: 51943
bin: 9.75e1
variant carriers: 26997

GenotypeQuality
all individuals: 489
bin: 3.25e1
variant carriers: 84

GenotypeQuality
all individuals: 709
bin: 8.25e1
variant carriers: 94

GenotypeQuality
all individuals: 701
bin: 7.75e1
variant carriers: 71

GenotypeQuality
all individuals: 751
bin: 9.25e1
variant carriers: 56

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 74

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 103

GenotypeQuality
all individuals: 1689
bin: 6.25e1
variant carriers: 86

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 25

South Asian
type: Population
allele count: 5456
allele frequency: 3.593256059009484e-1
allele num: 15184
num of homozygotes: 1005

Other
type: Population
allele count: 279
allele frequency: 3.134831460674157e-1
allele num: 890
num of homozygotes: 45

East Asian
type: Population
allele count: 3864
allele frequency: 4.486762656758012e-1
allele num: 8612
num of homozygotes: 862

African
type: Population
allele count: 1003
allele frequency: 9.681467181467182e-2
allele num: 10360
num of homozygotes: 42

European (Finnish)
type: Population
allele count: 1614
allele frequency: 2.441754916792738e-1
allele num: 6610
num of homozygotes: 181

Latino
type: Population
allele count: 4696
allele frequency: 4.064393283711269e-1
allele num: 11554
num of homozygotes: 971

European (Non-Finnish)
type: Population
allele count: 16142
allele frequency: 2.444054144081398e-1
allele num: 66046
num of homozygotes: 2082

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.978e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.98e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.06e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

DP
type: SiteQuality
SIO_000300: 4.159235e6

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

QD
type: SiteQuality
SIO_000300: 1.651e1

GenotypeQuality
all individuals: 777
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66106
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.462e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 4.882e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.176e1

DP
type: SiteQuality
SIO_000300: 3.660437e6

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511441613010489e-5
allele num: 66162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.536e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.771e0

FS
type: SiteQuality
SIO_000300: 1.1678e1

DP
type: SiteQuality
SIO_000300: 3.666533e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 2.241e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46650
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.683196e6

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 7.401e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.146e0

QD
type: SiteQuality
SIO_000300: 1.282e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

GenotypeQuality
all individuals: 431
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46650
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507159005275056e-5
allele num: 66350
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

FS
type: SiteQuality
SIO_000300: 7.401e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 3.683196e6

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.146e0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46649
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 726
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 1.0257e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.418e0

QD
type: SiteQuality
SIO_000300: 1.223e1

VQSLOD
type: SiteQuality
SIO_000300: -6.744e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.684768e6

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46651
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1344
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505253334136135e-5
allele num: 66434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.562e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 3.691786e6

FS
type: SiteQuality
SIO_000300: 2.836e0

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-2

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46663
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 772
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.855e0

MQ
type: SiteQuality
SIO_000300: 5.834e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

VQSLOD
type: SiteQuality
SIO_000300: -1.958e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

QD
type: SiteQuality
SIO_000300: 1.526e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

DP
type: SiteQuality
SIO_000300: 3.702436e6

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5583
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.353e0

QD
type: SiteQuality
SIO_000300: 1.332e1

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

DP
type: SiteQuality
SIO_000300: 3.705995e6

GenotypeQuality
all individuals: 5569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46666
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 3.706904e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5590
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46691
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1369
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

QD
type: SiteQuality
SIO_000300: 1.302e1

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.710173e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.154e0

GenotypeQuality
all individuals: 1398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46701
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

DP
type: SiteQuality
SIO_000300: 3.712562e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.81139337952271e-4
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 1.874e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 1.438e1

DP
type: SiteQuality
SIO_000300: 3.71286e6

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46705
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.348e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 1.138e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 3.714072e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 1.103e1

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.144e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

DP
type: SiteQuality
SIO_000300: 3.714346e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.783e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

FS
type: SiteQuality
SIO_000300: 9.499000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -2.251e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994664748373947e-5
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

DP
type: SiteQuality
SIO_000300: 3.714903e6

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.112e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeQuality
all individuals: 1564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46706
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.031e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: -6.963e-1

DP
type: SiteQuality
SIO_000300: 3.714497e6

GenotypeQuality
all individuals: 2031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.628e1

DP
type: SiteQuality
SIO_000300: 3.714277e6

FS
type: SiteQuality
SIO_000300: 1.053e0

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

DP
type: SiteQuality
SIO_000300: 3.713707e6

QD
type: SiteQuality
SIO_000300: 1.174e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

FS
type: SiteQuality
SIO_000300: 2.06e0

VQSLOD
type: SiteQuality
SIO_000300: 8.41e-1

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.925298421255295e-4
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.713618e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.215e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.076e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.713618e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.076e0

MQRankSum
type: SiteQuality
SIO_000300: -5.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.73e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.307e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.713132e6

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46720
bin: 9.75e1
variant carriers: 85

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 79
allele frequency: 1.183946287803854e-3
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.319281271596407e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.716542e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 2.386e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.788e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 5.459e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.919e0

QD
type: SiteQuality
SIO_000300: 1.341e1

DP
type: SiteQuality
SIO_000300: 3.711551e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 1552
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46699
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.465e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

FS
type: SiteQuality
SIO_000300: 4.893e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.02e0

DP
type: SiteQuality
SIO_000300: 3.711485e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2005
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46699
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.62e-1

FS
type: SiteQuality
SIO_000300: 2.247e0

QD
type: SiteQuality
SIO_000300: 1.521e1

DP
type: SiteQuality
SIO_000300: 3.711166e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.51e0

MQRankSum
type: SiteQuality
SIO_000300: -8.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46700
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 3.710438e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.91e-1

QD
type: SiteQuality
SIO_000300: 1.164e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46699
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

DP
type: SiteQuality
SIO_000300: 3.70912e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

FS
type: SiteQuality
SIO_000300: 6.055e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.632e1

MQRankSum
type: SiteQuality
SIO_000300: -1.835e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.767e1

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46697
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.944e-1

DP
type: SiteQuality
SIO_000300: 3.708026e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.682e1

MQRankSum
type: SiteQuality
SIO_000300: -1.497e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.063e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.99e-1

GenotypeQuality
all individuals: 1872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46700
bin: 9.75e1
variant carriers: 91

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.456619426201175e-4
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 77
allele frequency: 1.154284343706902e-3
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.239854633555421e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.705253e6

QD
type: SiteQuality
SIO_000300: 1.433e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.255e0

GenotypeQuality
all individuals: 4968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.425e1

FS
type: SiteQuality
SIO_000300: 5.032e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.70331e6

VQSLOD
type: SiteQuality
SIO_000300: -2.557e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.302e0

GenotypeQuality
all individuals: 46689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.051e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.478e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.217e0

DP
type: SiteQuality
SIO_000300: 3.701945e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.558e0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2497
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: -1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.895611e6

MQRankSum
type: SiteQuality
SIO_000300: -1.138e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.851e0

FS
type: SiteQuality
SIO_000300: 9.63e-1

QD
type: SiteQuality
SIO_000300: 1.625e1

GenotypeQuality
all individuals: 525
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 2.316e0

QD
type: SiteQuality
SIO_000300: 1.129e1

MQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.899487e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

GenotypeQuality
all individuals: 902
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10015
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

QD
type: SiteQuality
SIO_000300: 9.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.901476e6

FS
type: SiteQuality
SIO_000300: 1.114e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
all individuals: 37205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2495
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2871
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504347564461293e-5
allele num: 66474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 8.99e-1

FS
type: SiteQuality
SIO_000300: 9.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.749e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.911992e6

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003814844852963e-5
allele num: 66582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.96e-1

DP
type: SiteQuality
SIO_000300: 1.923655e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e0

QD
type: SiteQuality
SIO_000300: 1.19e1

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10165
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

MQRankSum
type: SiteQuality
SIO_000300: 2.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.502e0

QD
type: SiteQuality
SIO_000300: 1.296e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 1.204e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.21e-1

DP
type: SiteQuality
SIO_000300: 1.924329e6

GenotypeQuality
all individuals: 2877
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: -2.162e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.75e-1

FS
type: SiteQuality
SIO_000300: 2.255e0

QD
type: SiteQuality
SIO_000300: 8.85e0

DP
type: SiteQuality
SIO_000300: 1.929904e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.445e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.58e-1

GenotypeQuality
all individuals: 10224
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2758
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.019e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.26e0

DP
type: SiteQuality
SIO_000300: 1.933055e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e0

FS
type: SiteQuality
SIO_000300: 4.55e-1

QD
type: SiteQuality
SIO_000300: 1.513e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0