6-7303881-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303881
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303881
    reference: chr 6
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-11C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-11C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2076C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-11C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-11C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-11C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-15C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-11C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-11C>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-7303884-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303884
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303884
    reference: chr 6
allele count: 1
allele frequency: 8.267195767195768e-6
allele num: 120960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-14G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-14G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-14G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-14G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-14G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-14G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-14G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2079G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-18G>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

6-7303885-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303885
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303885
    reference: chr 6
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-15T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-15T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-15T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-15T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-19T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-15T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2080T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-15T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-15T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20005
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3332
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

6-7303889-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303889
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303889
    reference: chr 6
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-19T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-19T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2084T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-19T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-19T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-23T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-19T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-19T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-19T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

6-7303893-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303893
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303893
    reference: chr 6
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2088C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-27C>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4570
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

6-7303901-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303901
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303901
    reference: chr 6
allele count: 13
allele frequency: 1.080434168315021e-4
allele num: 120322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2096G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-31G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-31G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-31G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-35G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-31G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-31G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-31G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-31G>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8721
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-7303904-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303904
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303904
    reference: chr 6
allele count: 1
allele frequency: 8.321129010784183e-6
allele num: 120176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-34A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-34A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-34A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-34A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-38A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-34A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2099A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-34A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-34A>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

6-7303906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303906
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303906
    reference: chr 6
allele count: 4
allele frequency: 3.33127904458917e-5
allele num: 120074
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-36C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-40C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-36C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-36C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-36C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2101C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-36C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-36C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-36C>T
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-7303907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303907
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303907
    reference: chr 6
allele count: 41
allele frequency: 3.416495841874573e-4
allele num: 120006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-37C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-37C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-41C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-37C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-37C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-37C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2102C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-37C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-37C>T
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10641
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14955
  bin: 9.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14661
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-7303907-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303907
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303908
    reference: chr 6
allele count: 2
allele frequency: 1.666583337499792e-5
allele num: 120006
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-38dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2103dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-38dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-38dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-38dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-38dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-38dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-42dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-38dupT
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

6-7303909-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303909
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303908
    reference: chr 6
allele count: 22
allele frequency: 1.89029419851526e-4
allele num: 116384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2105delT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-40delT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-40delT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-40delT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-40delT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-40delT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-44delT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-40delT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-40delT
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14254
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5762
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12573
  bin: 6.25e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: GA
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

6-7303909-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303909
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303909
    reference: chr 6
allele count: 2
allele frequency: 1.718449271377509e-5
allele num: 116384
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5762
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14254
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12573
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6560
  num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 2.058460271716756e-4
  allele num: 9716
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64522
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 888
  num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

6-7303909-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303909
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303910
    reference: chr 6
allele count: 147
allele frequency: 1.263060214462469e-3
allele num: 116384
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-40dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-40dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-40dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-40dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-40dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-44dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-40dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2105dupT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-40dupT
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 14254
  bin: 9.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

6-7303910-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303910
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303910
    reference: chr 6
allele count: 2
allele frequency: 1.723127821621808e-5
allele num: 116068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-40T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-40T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2105T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-40T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-44T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-40T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-40T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-40T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-40T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8360
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

6-7303917-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303917
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303917
    reference: chr 6
allele count: 1
allele frequency: 8.386728840283135e-6
allele num: 119236
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-47T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-51T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-47T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-47T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-47T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-47T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-47T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-47T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2112T>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11197
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

6-7303921-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7303921
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7303921
    reference: chr 6
allele count: 1
allele frequency: 8.439103429651633e-6
allele num: 118496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.304-55T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.193-51T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.193-51T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.258-51T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.200-2116T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.193-51T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.193-51T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.193-51T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.193-51T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9659
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14606
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

6-7310067-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310067
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310067
    reference: chr 6
allele count: 1
allele frequency: 9.510223490252021e-6
allele num: 105150
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+83C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+83C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+83C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+83C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+83C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+83C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+83C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+83C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.199+49C>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4990
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

6-7310073-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310073
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310073
    reference: chr 6
allele count: 3
allele frequency: 2.826082860749477e-5
allele num: 106154
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+77C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.199+43C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+77C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+77C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+77C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+77C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+77C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+77C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+77C>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13325
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4939
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4885
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/6-7310093-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310093
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310093
    reference: chr 6
allele count: 2
allele frequency: 1.830328543973643e-5
allele num: 109270
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+57T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+57T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+57T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+57T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.199+23T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+57T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+57T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+57T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+57T>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

6-7310104-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310104
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310104
    reference: chr 6
allele count: 1
allele frequency: 8.903133903133903e-6
allele num: 112320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.199+12T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+46T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+46T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+46T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+46T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+46T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+46T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+46T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+46T>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6888
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

6-7310111-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310111
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310111
    reference: chr 6
allele count: 624
allele frequency: 5.421372719374457e-3
allele num: 115100
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+39G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+39G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+39G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.199+5G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+39G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+39G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+39G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+39G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+39G>A
  variant of: http://identifiers.org/hgnc/11323
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29835
  bin: 2.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 3.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6167
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.25e1
  variant carriers: 2
hgvs: c.199+5G>A
num of homozygotes: 5
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

6-7310112-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310112
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310112
    reference: chr 6
allele count: 3
allele frequency: 2.597177733529565e-5
allele num: 115510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.199+4T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+38T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+38T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+38T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+38T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+38T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+38T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+38T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+38T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11690
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 7.75e1
  variant carriers: 0
hgvs: c.199+4T>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-7310115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310115
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310115
    reference: chr 6
allele count: 2
allele frequency: 1.715707300334563e-5
allele num: 116570
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+35G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+35G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.199+1G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+35G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+35G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+35G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+35G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+35G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+35G>A
  variant of: http://identifiers.org/hgnc/11323
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11885
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
hgvs: c.199+1G>A
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-7310120-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310120
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310120
    reference: chr 6
allele count: 1
allele frequency: 8.458662516282926e-6
allele num: 118222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+30A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+30A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+30A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+30A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+30A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.195A>G
  hgvsp: ENST00000534851.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+30A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+30A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+30A>G
  variant of: http://identifiers.org/hgnc/11323
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val65Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

6-7310126-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310126
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310126
    reference: chr 6
allele count: 2
allele frequency: 1.668752607425949e-5
allele num: 119850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+24A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+24A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+24A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.193-4A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+24A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+24A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+24A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+24A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+24A>G
  variant of: http://identifiers.org/hgnc/11323
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7192
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
hgvs: c.193-4A>G
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-7310132-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310132
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310132
    reference: chr 6
allele count: 1
allele frequency: 8.275405494869249e-6
allele num: 120840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+18T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+18T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+18T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+18T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+18T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.193-10T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+18T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+18T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+18T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6759
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

6-7310134-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310134
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310134
    reference: chr 6
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.193-12T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+16T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-7310138-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310138
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310138
    reference: chr 6
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+12A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+12A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+12A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+12A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+12A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+12A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+12A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.192+12A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+12A>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

6-7310140-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310140
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310140
    reference: chr 6
allele count: 2
allele frequency: 1.649756660892518e-5
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+10A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.192+10A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+10A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+10A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+10A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+10A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+10A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+10A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+10A>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12805
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7210
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-7310147-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310147
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310147
    reference: chr 6
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.192+3T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.192+3T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.192+3T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.303+3T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.192+3T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.192+3T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.192+3T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.192+3T>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.257+3T>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 8.25e1
  variant carriers: 0
hgvs: c.192+3T>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

6-7310159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310159
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310159
    reference: chr 6
allele count: 8
allele frequency: 6.592066448029797e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.183C>T
  hgvsp: ENST00000479365.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.294C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.183C>T
  hgvsp: ENST00000489567.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.248C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.183C>T
  hgvsp: ENST00000397511.2:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.183C>T
  hgvsp: ENST00000244763.4:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.183C>T
  hgvsp: ENST00000474597.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.183C>T
  hgvsp: ENST00000462112.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.183C>T
  hgvsp: ENST00000534851.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36975
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro61Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-7310161-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310161
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310161
    reference: chr 6
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.292C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.181C>A
  hgvsp: ENSP00000418617.1:p.Pro61Thr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.181C>A
  hgvsp: ENSP00000443020.1:p.Pro61Thr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.246C>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.181C>A
  hgvsp: ENSP00000244763.4:p.Pro61Thr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.181C>A
  hgvsp: ENSP00000417290.1:p.Pro61Thr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.181C>A
  hgvsp: ENSP00000380647.2:p.Pro61Thr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.181C>A
  hgvsp: ENSP00000417911.1:p.Pro61Thr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.181C>A
  hgvsp: ENSP00000420730.1:p.Pro61Thr
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro61Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

6-7310162-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310162
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310162
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.180A>T
  hgvsp: ENSP00000417911.1:p.Glu60Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.180A>T
  hgvsp: ENSP00000418617.1:p.Glu60Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.245A>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.180A>T
  hgvsp: ENSP00000417290.1:p.Glu60Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.180A>T
  hgvsp: ENSP00000244763.4:p.Glu60Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.291A>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.180A>T
  hgvsp: ENSP00000443020.1:p.Glu60Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.180A>T
  hgvsp: ENSP00000380647.2:p.Glu60Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.180A>T
  hgvsp: ENSP00000420730.1:p.Glu60Asp
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu60Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

6-7310165-ATCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310165
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310162
    reference: chr 6
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.239_241delAGA
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.174_176delAGA
  hgvsp: ENSP00000417911.1:p.Glu58del
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.174_176delAGA
  hgvsp: ENSP00000418617.1:p.Glu58del
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.174_176delAGA
  hgvsp: ENSP00000417290.1:p.Glu58del
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.285_287delAGA
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.174_176delAGA
  hgvsp: ENSP00000420730.1:p.Glu58del
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.174_176delAGA
  hgvsp: ENSP00000380647.2:p.Glu58del
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.174_176delAGA
  hgvsp: ENSP00000443020.1:p.Glu58del
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.174_176delAGA
  hgvsp: ENSP00000244763.4:p.Glu58del
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu58del
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: ATCT
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-7310166-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310166
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310166
    reference: chr 6
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.176A>T
  hgvsp: ENSP00000417911.1:p.Asp59Val
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.241A>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.176A>T
  hgvsp: ENSP00000244763.4:p.Asp59Val
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.176A>T
  hgvsp: ENSP00000380647.2:p.Asp59Val
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.176A>T
  hgvsp: ENSP00000417290.1:p.Asp59Val
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.176A>T
  hgvsp: ENSP00000420730.1:p.Asp59Val
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.287A>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.176A>T
  hgvsp: ENSP00000443020.1:p.Asp59Val
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.176A>T
  hgvsp: ENSP00000418617.1:p.Asp59Val
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp59Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

6-7310168-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310168
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310168
    reference: chr 6
allele count: 5
allele frequency: 4.119769952045878e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.239A>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.174A>T
  hgvsp: ENSP00000417290.1:p.Glu58Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.174A>T
  hgvsp: ENSP00000244763.4:p.Glu58Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.174A>T
  hgvsp: ENSP00000420730.1:p.Glu58Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.174A>T
  hgvsp: ENSP00000417911.1:p.Glu58Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.174A>T
  hgvsp: ENSP00000443020.1:p.Glu58Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.174A>T
  hgvsp: ENSP00000380647.2:p.Glu58Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.174A>T
  hgvsp: ENSP00000418617.1:p.Glu58Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.285A>T
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu58Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

6-7310170-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310170
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310170
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.172G>A
  hgvsp: ENSP00000244763.4:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.237G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.172G>A
  hgvsp: ENSP00000380647.2:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.172G>A
  hgvsp: ENSP00000417911.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.172G>A
  hgvsp: ENSP00000417290.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.172G>A
  hgvsp: ENSP00000418617.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.283G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.172G>A
  hgvsp: ENSP00000443020.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.172G>A
  hgvsp: ENSP00000420730.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7221
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu58Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

6-7310173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310173
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310173
    reference: chr 6
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.169G>A
  hgvsp: ENSP00000418617.1:p.Glu57Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.169G>A
  hgvsp: ENSP00000244763.4:p.Glu57Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.169G>A
  hgvsp: ENSP00000417911.1:p.Glu57Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.169G>A
  hgvsp: ENSP00000420730.1:p.Glu57Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.169G>A
  hgvsp: ENSP00000443020.1:p.Glu57Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.280G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.169G>A
  hgvsp: ENSP00000417290.1:p.Glu57Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.169G>A
  hgvsp: ENSP00000380647.2:p.Glu57Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.234G>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu57Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-7310177-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310177
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310177
    reference: chr 6
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.165G>T
  hgvsp: ENSP00000417290.1:p.Glu55Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.165G>T
  hgvsp: ENSP00000418617.1:p.Glu55Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.165G>T
  hgvsp: ENSP00000443020.1:p.Glu55Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.276G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.165G>T
  hgvsp: ENSP00000244763.4:p.Glu55Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.165G>T
  hgvsp: ENSP00000420730.1:p.Glu55Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.165G>T
  hgvsp: ENSP00000417911.1:p.Glu55Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.165G>T
  hgvsp: ENSP00000380647.2:p.Glu55Asp
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.230G>T
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu55Asp
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD

6-7310179-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310179
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310179
    reference: chr 6
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.163G>A
  hgvsp: ENSP00000417911.1:p.Glu55Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.163G>A
  hgvsp: ENSP00000417290.1:p.Glu55Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.163G>A
  hgvsp: ENSP00000244763.4:p.Glu55Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.163G>A
  hgvsp: ENSP00000443020.1:p.Glu55Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.163G>A
  hgvsp: ENSP00000420730.1:p.Glu55Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.228G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.163G>A
  hgvsp: ENSP00000380647.2:p.Glu55Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.163G>A
  hgvsp: ENSP00000418617.1:p.Glu55Lys
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.274G>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu55Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

6-7310180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310180
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310180
    reference: chr 6
allele count: 61
allele frequency: 5.025788060045808e-4
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.162C>T
  hgvsp: ENST00000534851.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.162C>T
  hgvsp: ENST00000479365.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.162C>T
  hgvsp: ENST00000462112.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.162C>T
  hgvsp: ENST00000244763.4:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.273C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.162C>T
  hgvsp: ENST00000474597.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.227C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.162C>T
  hgvsp: ENST00000489567.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.162C>T
  hgvsp: ENST00000397511.2:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala54Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/6-7310201-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310201
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310201
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.206T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.141T>G
  hgvsp: ENSP00000418617.1:p.Ile47Met
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.141T>G
  hgvsp: ENSP00000417290.1:p.Ile47Met
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.141T>G
  hgvsp: ENSP00000443020.1:p.Ile47Met
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.141T>G
  hgvsp: ENSP00000420730.1:p.Ile47Met
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.141T>G
  hgvsp: ENSP00000244763.4:p.Ile47Met
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.141T>G
  hgvsp: ENSP00000417911.1:p.Ile47Met
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.141T>G
  hgvsp: ENSP00000380647.2:p.Ile47Met
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.252T>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36961
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile47Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/6-7310202-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310202
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310202
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.140T>G
  hgvsp: ENSP00000417290.1:p.Ile47Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.140T>G
  hgvsp: ENSP00000417911.1:p.Ile47Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.251T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.205T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.140T>G
  hgvsp: ENSP00000443020.1:p.Ile47Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.140T>G
  hgvsp: ENSP00000420730.1:p.Ile47Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.140T>G
  hgvsp: ENSP00000380647.2:p.Ile47Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.140T>G
  hgvsp: ENSP00000418617.1:p.Ile47Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.140T>G
  hgvsp: ENSP00000244763.4:p.Ile47Ser
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6845
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile47Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-7310212-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310212
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310212
    reference: chr 6
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.130G>T
  hgvsp: ENSP00000417911.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.130G>T
  hgvsp: ENSP00000417290.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.130G>T
  hgvsp: ENSP00000420730.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.130G>T
  hgvsp: ENSP00000244763.4:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.130G>T
  hgvsp: ENSP00000418617.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.241G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.195G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.130G>T
  hgvsp: ENSP00000380647.2:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.130G>T
  hgvsp: ENSP00000443020.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp44Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

6-7310229-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310229
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310229
    reference: chr 6
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.113A>G
  hgvsp: ENSP00000417290.1:p.Asp38Gly
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.224A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.113A>G
  hgvsp: ENSP00000418617.1:p.Asp38Gly
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.113A>G
  hgvsp: ENSP00000443020.1:p.Asp38Gly
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.113A>G
  hgvsp: ENSP00000420730.1:p.Asp38Gly
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.178A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.113A>G
  hgvsp: ENSP00000244763.4:p.Asp38Gly
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.113A>G
  hgvsp: ENSP00000417911.1:p.Asp38Gly
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.113A>G
  hgvsp: ENSP00000380647.2:p.Asp38Gly
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp38Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

6-7310237-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310237
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310237
    reference: chr 6
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.105T>C
  hgvsp: ENST00000462112.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.105T>C
  hgvsp: ENST00000479365.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.105T>C
  hgvsp: ENST00000534851.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.105T>C
  hgvsp: ENST00000489567.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.105T>C
  hgvsp: ENST00000474597.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.105T>C
  hgvsp: ENST00000244763.4:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.105T>C
  hgvsp: ENST00000397511.2:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.216T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.170T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu35Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

6-7310242-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310242
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310242
    reference: chr 6
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.100G>C
  hgvsp: ENSP00000417290.1:p.Asp34His
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.100G>C
  hgvsp: ENSP00000244763.4:p.Asp34His
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.100G>C
  hgvsp: ENSP00000417911.1:p.Asp34His
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.100G>C
  hgvsp: ENSP00000443020.1:p.Asp34His
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.100G>C
  hgvsp: ENSP00000418617.1:p.Asp34His
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.211G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.100G>C
  hgvsp: ENSP00000380647.2:p.Asp34His
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.165G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.100G>C
  hgvsp: ENSP00000420730.1:p.Asp34His
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12884
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp34His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

6-7310243-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310243
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310243
    reference: chr 6
allele count: 17
allele frequency: 1.400514071047255e-4
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.99A>G
  hgvsp: ENST00000479365.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.99A>G
  hgvsp: ENST00000397511.2:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.210A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.99A>G
  hgvsp: ENST00000474597.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.99A>G
  hgvsp: ENST00000489567.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.164A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.99A>G
  hgvsp: ENST00000462112.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.99A>G
  hgvsp: ENST00000244763.4:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.99A>G
  hgvsp: ENST00000534851.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7252
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln33Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS

6-7310246-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310246
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310246
    reference: chr 6
allele count: 4
allele frequency: 3.295327225993541e-5
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.96A>G
  hgvsp: ENST00000462112.1:c.96A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.161A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.96A>G
  hgvsp: ENST00000534851.1:c.96A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.96A>G
  hgvsp: ENST00000474597.1:c.96A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.96A>G
  hgvsp: ENST00000397511.2:c.96A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.207A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.96A>G
  hgvsp: ENST00000244763.4:c.96A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.96A>G
  hgvsp: ENST00000479365.1:c.96A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.96A>G
  hgvsp: ENST00000489567.1:c.96A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala32Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

6-7310258-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310258
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310258
    reference: chr 6
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.84G>C
  hgvsp: ENSP00000417290.1:p.Leu28Phe
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.84G>C
  hgvsp: ENSP00000380647.2:p.Leu28Phe
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.84G>C
  hgvsp: ENSP00000417911.1:p.Leu28Phe
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.84G>C
  hgvsp: ENSP00000420730.1:p.Leu28Phe
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.149G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.84G>C
  hgvsp: ENSP00000244763.4:p.Leu28Phe
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.195G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.84G>C
  hgvsp: ENSP00000443020.1:p.Leu28Phe
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.84G>C
  hgvsp: ENSP00000418617.1:p.Leu28Phe
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu28Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-7310258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310258
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310258
    reference: chr 6
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.195G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.84G>A
  hgvsp: ENST00000479365.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.149G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.84G>A
  hgvsp: ENST00000534851.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.84G>A
  hgvsp: ENST00000397511.2:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.84G>A
  hgvsp: ENST00000489567.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.84G>A
  hgvsp: ENST00000462112.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.84G>A
  hgvsp: ENST00000474597.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.84G>A
  hgvsp: ENST00000244763.4:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu28Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

6-7310259-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310259
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310259
    reference: chr 6
allele count: 30909
allele frequency: 2.54743105807111e-1
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.83T>C
  hgvsp: ENSP00000417911.1:p.Leu28Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.194T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.148T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.83T>C
  hgvsp: ENSP00000244763.4:p.Leu28Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.83T>C
  hgvsp: ENSP00000418617.1:p.Leu28Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.83T>C
  hgvsp: ENSP00000417290.1:p.Leu28Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.83T>C
  hgvsp: ENSP00000380647.2:p.Leu28Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.83T>C
  hgvsp: ENSP00000443020.1:p.Leu28Ser
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.83T>C
  hgvsp: ENSP00000420730.1:p.Leu28Ser
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 9.75e1
  variant carriers: 8179
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 1491
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 7.75e1
  variant carriers: 2267
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 3.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 7.25e1
  variant carriers: 2113
genotype depth: GenotypeDepth
  all individuals: 8010
  bin: 2.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 19201
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 6.75e1
  variant carriers: 1986
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 6.25e1
  variant carriers: 1781
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.25e1
  variant carriers: 1148
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 486
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 8.25e1
  variant carriers: 2121
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 8.75e1
  variant carriers: 1911
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.75e1
  variant carriers: 784
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.25e1
  variant carriers: 1624
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 3
hgvs: p.Leu28Ser
num of homozygotes: 4436
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

6-7310261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310261
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310261
    reference: chr 6
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.146C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.81C>T
  hgvsp: ENST00000244763.4:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.192C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.81C>T
  hgvsp: ENST00000479365.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.81C>T
  hgvsp: ENST00000462112.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.81C>T
  hgvsp: ENST00000474597.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.81C>T
  hgvsp: ENST00000489567.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.81C>T
  hgvsp: ENST00000534851.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.81C>T
  hgvsp: ENST00000397511.2:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 7.75e1
  variant carriers: 0
hgvs: c.81C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

6-7310266-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310266
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310266
    reference: chr 6
allele count: 3
allele frequency: 2.472799208704253e-5
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.80-4T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.80-4T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.80-4T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.80-4T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.80-4T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-4T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.80-4T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.191-4T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.80-4T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: c.80-4T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

6-7310267-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310267
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310267
    reference: chr 6
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.80-5A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.191-5A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.80-5A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-5A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.80-5A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.80-5A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.80-5A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.80-5A>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.80-5A>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
hgvs: c.80-5A>G
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/6-7310269-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310269
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310269
    reference: chr 6
allele count: 332
allele frequency: 2.736699803814894e-3
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.80-7T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-7T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.80-7T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.80-7T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.80-7T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.191-7T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.80-7T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.80-7T>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.80-7T>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20341
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16491
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6897
  bin: 9.75e1
  variant carriers: 323
hgvs: c.80-7T>G
num of homozygotes: 9
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-7310273-AATACAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310273
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310267
    reference: chr 6
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.80-17_80-12delCTGTAT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.80-17_80-12delCTGTAT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.191-17_191-12delCTGTAT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.80-17_80-12delCTGTAT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-17_145-12delCTGTAT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.80-17_80-12delCTGTAT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.80-17_80-12delCTGTAT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.80-17_80-12delCTGTAT
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.80-17_80-12delCTGTAT
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6593
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8126
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: AATACAG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

6-7310277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310277
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310277
    reference: chr 6
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-15G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.80-15G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.80-15G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.191-15G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.80-15G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.80-15G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.80-15G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.80-15G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.80-15G>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

6-7310278-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310278
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310278
    reference: chr 6
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.80-16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.80-16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.80-16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.80-16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.191-16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.80-16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.80-16T>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.80-16T>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-7310285-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310285
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310285
    reference: chr 6
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.80-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.80-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.191-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.80-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.80-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.80-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.80-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.80-23C>G
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-23C>G
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8010
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

6-7310294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310294
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310294
    reference: chr 6
allele count: 14
allele frequency: 1.161286041341783e-4
allele num: 120556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.80-32G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.80-32G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.80-32G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.80-32G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.80-32G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-32G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.80-32G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.191-32G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.80-32G>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15293
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

6-7310313-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7310313
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7310313
    reference: chr 6
allele count: 1
allele frequency: 8.464533604198409e-6
allele num: 118140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.191-51A>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.80-51A>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.80-51A>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.80-51A>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.80-51A>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.80-51A>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-51A>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.80-51A>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.80-51A>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5993
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4602
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5588
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS

6-7313228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7313228
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7313228
    reference: chr 6
allele count: 19
allele frequency: 5.855522682445759e-4
allele num: 32448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-2966C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.190+47C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.79+47C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.79+47C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.79+47C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.79+47C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.79+47C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.79+47C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.79+47C>T
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17057
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26494
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15016
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4390
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

6-7313229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7313229
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7313229
    reference: chr 6
allele count: 12
allele frequency: 3.699136868064119e-4
allele num: 32440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.79+46C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.79+46C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.79+46C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.190+46C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.79+46C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.79+46C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.79+46C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.79+46C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-2967C>T
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16989
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26513
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6505
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 6.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

6-7313236-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7313236
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7313236
    reference: chr 6
allele count: 4
allele frequency: 1.204891860955479e-4
allele num: 33198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.79+39G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.79+39G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.79+39G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.79+39G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.79+39G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.190+39G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-2974G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.79+39G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.79+39G>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27802
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15467
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

6-7313239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7313239
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7313239
    reference: chr 6
allele count: 1
allele frequency: 2.984718242597899e-5
allele num: 33504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.79+36G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.190+36G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.79+36G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-2977G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.79+36G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.79+36G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.79+36G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.79+36G>A
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.79+36G>A
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28609
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11831
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4564
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

6-7313242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7313242
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7313242
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 34008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.79+33C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.79+33C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.79+33C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.79+33C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-2980C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.79+33C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.79+33C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.79+33C>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.190+33C>T
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29606
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/6-7313248-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7313248
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7313248
    reference: chr 6
allele count: 1
allele frequency: 2.790334282046989e-5
allele num: 35838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-2986G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.79+27G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.79+27G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.79+27G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.79+27G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.190+27G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.79+27G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.79+27G>T
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.79+27G>T
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

6-7313250-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7313250
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7313250
    reference: chr 6
allele count: 1
allele frequency: 2.722570106180234e-5
allele num: 36730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.79+25G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.79+25G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.79+25G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.190+25G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.79+25G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-2988G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.79+25G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.79+25G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.79+25G>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9798
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

6-7313251-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7313251
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 7313251
    reference: chr 6
allele count: 1
allele frequency: 2.698181425719065e-5
allele num: 37062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000418617
  ensembl transcript: ENST00000474597
  gene symbol: SSR1
  hgvsc: ENST00000474597.1:c.79+24G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000488834
  gene symbol: SSR1
  hgvsc: ENST00000488834.1:n.145-2989G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000244763
  ensembl transcript: ENST00000244763
  gene symbol: SSR1
  hgvsc: ENST00000244763.4:c.79+24G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl transcript: ENST00000483409
  gene symbol: SSR1
  hgvsc: ENST00000483409.1:n.190+24G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000443020
  ensembl transcript: ENST00000534851
  gene symbol: SSR1
  hgvsc: ENST00000534851.1:c.79+24G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417290
  ensembl transcript: ENST00000462112
  gene symbol: SSR1
  hgvsc: ENST00000462112.1:c.79+24G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000420730
  ensembl transcript: ENST00000489567
  gene symbol: SSR1
  hgvsc: ENST00000489567.1:c.79+24G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000417911
  ensembl transcript: ENST00000479365
  gene symbol: SSR1
  hgvsc: ENST00000479365.1:c.79+24G>C
  variant of: http://identifiers.org/hgnc/11323
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124783
  ensembl protein: ENSP00000380647
  ensembl transcript: ENST00000397511
  gene symbol: SSR1
  hgvsc: ENST00000397511.2:c.79+24G>C
  variant of: http://identifiers.org/hgnc/11323
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20144
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14936
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 6.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 2.174753e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

GenotypeQuality
all individuals: 14935
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2208
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.695559433779329e-5
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.07e1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.174257e6

FS
type: SiteQuality
SIO_000300: 4.001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.902e0

GenotypeQuality
all individuals: 2208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.073e0

FS
type: SiteQuality
SIO_000300: 1.4953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e0

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e0

QD
type: SiteQuality
SIO_000300: 1.538e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.172739e6

GenotypeQuality
all individuals: 4576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4200
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.659e1

FS
type: SiteQuality
SIO_000300: 6.434e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.32e0

DP
type: SiteQuality
SIO_000300: 2.169379e6

MQRankSum
type: SiteQuality
SIO_000300: -6.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.524e0

VQSLOD
type: SiteQuality
SIO_000300: -1.123e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14933
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504302304591131e-5
allele num: 66476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.16368e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.341e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.072e0

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.143e0

MQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

GenotypeQuality
all individuals: 3328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4545
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variant carriers: 0

GenotypeQuality
all individuals: 14942
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.959011452682339e-4
allele num: 66360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

QD
type: SiteQuality
SIO_000300: 1.638e1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.139003e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 4190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
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variant carriers: 0

GenotypeQuality
all individuals: 15675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 6610
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14931
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.00080064051241e-4
allele num: 9992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.384e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.741e0

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.907e1

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

DP
type: SiteQuality
SIO_000300: 2.12981e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.59e-1

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4539
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.027550711474417e-4
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.83e0

FS
type: SiteQuality
SIO_000300: 2.995e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.125273e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.356e0

QD
type: SiteQuality
SIO_000300: 2.954e1

GenotypeQuality
all individuals: 6542
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
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GenotypeQuality
all individuals: 3146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.5e0
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GenotypeQuality
all individuals: 2200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4181
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 38
allele frequency: 3.817560779586096e-3
allele num: 9954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.528985507246377e-5
allele num: 66240
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

QD
type: SiteQuality
SIO_000300: 1.322e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.292e0

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

DP
type: SiteQuality
SIO_000300: 2.123031e6

GenotypeQuality
all individuals: 220
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 888
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GenotypeQuality
all individuals: 6542
bin: 6.75e1
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GenotypeQuality
all individuals: 14955
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variant carriers: 2

GenotypeQuality
all individuals: 14661
bin: 6.25e1
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GenotypeQuality
all individuals: 1878
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.00924251557163e-4
allele num: 9954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.322e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.292e0

DP
type: SiteQuality
SIO_000300: 2.123031e6

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

GenotypeQuality
all individuals: 672
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1022
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 823
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 387
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2119
bin: 2.25e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.789746133101888e-4
allele num: 64522
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.99468085106383e-4
allele num: 15040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.195886151638364e-4
allele num: 8362
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

DP
type: SiteQuality
SIO_000300: 2.152483e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

QD
type: SiteQuality
SIO_000300: 5.8e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.24e0

QD
type: SiteQuality
SIO_000300: 5.8e0

DP
type: SiteQuality
SIO_000300: 2.152483e6

GenotypeQuality
all individuals: 387
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1696
bin: 3.25e1
variant carriers: 5

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 9

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 5.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.252252252252252e-3
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 58
allele frequency: 3.856382978723404e-3
allele num: 15040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.944732029385326e-4
allele num: 64522
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.541076487252125e-4
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 63
allele frequency: 7.534082755321693e-3
allele num: 8362
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029230135858378e-4
allele num: 9716
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

QD
type: SiteQuality
SIO_000300: 5.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

DP
type: SiteQuality
SIO_000300: 2.152483e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 591
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variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.102506825515016e-5
allele num: 64464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14874
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.075e0

FS
type: SiteQuality
SIO_000300: 2.878e0

DP
type: SiteQuality
SIO_000300: 2.147448e6

QD
type: SiteQuality
SIO_000300: 1.755e1

GenotypeQuality
all individuals: 1734
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4072
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variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519202722411279e-5
allele num: 65824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

QD
type: SiteQuality
SIO_000300: 1.318e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.19e-1

DP
type: SiteQuality
SIO_000300: 2.096131e6

GenotypeQuality
all individuals: 2227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5398
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.1936022917164e-4
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.452e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 2.09055e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.16e0

GenotypeQuality
all individuals: 2686
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5099
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.758025385886572e-5
allele num: 56882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.691e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.052e0

DP
type: SiteQuality
SIO_000300: 1.433214e6

VQSLOD
type: SiteQuality
SIO_000300: -1.137e-1

QD
type: SiteQuality
SIO_000300: 1.577e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.349086691794723e-4
allele num: 6898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15296
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

GenotypeQuality
all individuals: 2202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
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variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24931
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6869
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 724
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.288992008249549e-4
allele num: 15516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 1.575943e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.38e1

GenotypeQuality
all individuals: 821
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 484
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GenotypeQuality
all individuals: 2348
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variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61296
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.327668613913967e-4
allele num: 7532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.558e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 1.645848e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e0

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

GenotypeQuality
all individuals: 7412
bin: 9.75e1
variant carriers: 601

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 4

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 204
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GenotypeQuality
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bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3059
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GenotypeQuality
all individuals: 836
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 468
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 7.75e1
variant carriers: 4

African
type: Population
allele count: 433
allele frequency: 4.533082077051926e-2
allele num: 9552
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 110
allele frequency: 1.747973939297632e-3
allele num: 62930
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.774059630142156e-4
allele num: 15898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.532332209623046e-4
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 71
allele frequency: 6.229163011054571e-3
allele num: 11398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.370786516853933e-3
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.704278e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

QD
type: SiteQuality
SIO_000300: 1.25e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.642e0

GenotypeQuality
all individuals: 32587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 64
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 424
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GenotypeQuality
all individuals: 177
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variant carriers: 0

GenotypeQuality
all individuals: 7162
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6251
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.626970227670753e-4
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.183e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.93e-1

DP
type: SiteQuality
SIO_000300: 1.709924e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.74e-1

GenotypeQuality
all individuals: 1865
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 7166
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variant carriers: 2

GenotypeQuality
all individuals: 6331
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variant carriers: 0

GenotypeQuality
all individuals: 2379
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33489
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variant carriers: 0

GenotypeQuality
all individuals: 1033
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GenotypeQuality
all individuals: 860
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variant carriers: 0

GenotypeQuality
all individuals: 173
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variant carriers: 0

GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
all individuals: 115
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variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.460629921259842e-4
allele num: 8128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

QD
type: SiteQuality
SIO_000300: 1.44e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.528e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

DP
type: SiteQuality
SIO_000300: 1.724993e6

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6501
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
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variant carriers: 0

GenotypeQuality
all individuals: 165
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variant carriers: 0

GenotypeQuality
all individuals: 358
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variant carriers: 0

GenotypeQuality
all individuals: 7171
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variant carriers: 1

GenotypeQuality
all individuals: 3005
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variant carriers: 0

GenotypeQuality
all individuals: 122
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1046
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GenotypeQuality
all individuals: 1898
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34834
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546503355912282e-5
allele num: 64662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.744777e6

GenotypeQuality
all individuals: 1060
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35904
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 6653
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GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 893
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variant carriers: 0

GenotypeQuality
all individuals: 1935
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variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.046365685736916e-5
allele num: 65652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.144e1

VQSLOD
type: SiteQuality
SIO_000300: -5.272e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

FS
type: SiteQuality
SIO_000300: 1.2465e1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

DP
type: SiteQuality
SIO_000300: 1.765763e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

GenotypeQuality
all individuals: 285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
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GenotypeQuality
all individuals: 3060
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.394e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

DP
type: SiteQuality
SIO_000300: 1.777669e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36810
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 2535
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 7204
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variant carriers: 1

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 1071
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variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.379e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 2.252e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-1

DP
type: SiteQuality
SIO_000300: 1.779513e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

GenotypeQuality
all individuals: 1966
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.652015919709292e-5
allele num: 11558
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66632
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Latino
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allele frequency: 0.0e0
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African
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VQSLOD
type: SiteQuality
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MQRankSum
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FS
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QD
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 7
allele frequency: 6.048038707447727e-4
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.283e0

FS
type: SiteQuality
SIO_000300: 3.112e0

DP
type: SiteQuality
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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Latino
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Other
type: Population
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.574e0

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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Other
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South Asian
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African
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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Other
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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QD
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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South Asian
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African
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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FS
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494454103963068e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.471e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

FS
type: SiteQuality
SIO_000300: 6.02e-1

DP
type: SiteQuality
SIO_000300: 1.785633e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 1.411e1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 3097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.387e1

MQ
type: SiteQuality
SIO_000300: 5.908e1

DP
type: SiteQuality
SIO_000300: 1.785431e6

FS
type: SiteQuality
SIO_000300: 1.063e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.311e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.026e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.377e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.102e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.785511e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.542e0

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.661e0

QD
type: SiteQuality
SIO_000300: 1.287e1

GenotypeQuality
all individuals: 3098
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36973
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6838
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.46e-1

DP
type: SiteQuality
SIO_000300: 1.785545e6

FS
type: SiteQuality
SIO_000300: 1.0728e1

QD
type: SiteQuality
SIO_000300: 1.061e1

VQSLOD
type: SiteQuality
SIO_000300: -9.812e-1

GenotypeQuality
all individuals: 2566
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 36972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7223
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 909
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.785687e6

FS
type: SiteQuality
SIO_000300: 1.264e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.317e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.195000000000001e-1

QD
type: SiteQuality
SIO_000300: 6.71e0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7281
bin: 9.75e1
variant carriers: 61

GenotypeQuality
all individuals: 2559
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 57
allele frequency: 4.923980649619904e-3
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817520901490367e-4
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

DP
type: SiteQuality
SIO_000300: 1.790955e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.909e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 9.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

FS
type: SiteQuality
SIO_000300: 1.446e0

DP
type: SiteQuality
SIO_000300: 1.786746e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
all individuals: 1977
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 3.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.786815e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.353e1

VQSLOD
type: SiteQuality
SIO_000300: -1.994e0

DP
type: SiteQuality
SIO_000300: 1.786888e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.315e0

QD
type: SiteQuality
SIO_000300: 6.16e0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.85e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

FS
type: SiteQuality
SIO_000300: 8.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.92e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.787005e6

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

DP
type: SiteQuality
SIO_000300: 1.787253e6

FS
type: SiteQuality
SIO_000300: 1.103e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.425e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

GenotypeQuality
all individuals: 2567
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7238
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.45e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.484e0

DP
type: SiteQuality
SIO_000300: 1.787396e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.151e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.758e0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1976
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variant carriers: 0

GenotypeQuality
all individuals: 909
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6851
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.848856020337416e-3
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e-1

QD
type: SiteQuality
SIO_000300: 1.512e1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.788476e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 3.149e0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7253
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1977
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2568
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.845414343395501e-4
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.325e1

FS
type: SiteQuality
SIO_000300: 2.098e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.74e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.958e0

VQSLOD
type: SiteQuality
SIO_000300: 6.79e-1

DP
type: SiteQuality
SIO_000300: 1.788851e6

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6844
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.789055e6

FS
type: SiteQuality
SIO_000300: 4.62e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

VQSLOD
type: SiteQuality
SIO_000300: -3.54e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
SIO_000300: 1.711e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.252e0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7260
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36869
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.711e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.54e-2

DP
type: SiteQuality
SIO_000300: 1.789055e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.252e0

FS
type: SiteQuality
SIO_000300: 4.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 3838
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 7
bin: 5.25e1
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GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23245
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22
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variant carriers: 2

GenotypeQuality
all individuals: 1382
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1273
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 792
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variant carriers: 20

GenotypeQuality
all individuals: 29321
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variant carriers: 26393

GenotypeQuality
all individuals: 395
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GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 1679
allele frequency: 2.540090771558245e-1
allele num: 6610
num of homozygotes: 213

East Asian
type: Population
allele count: 1855
allele frequency: 2.144508670520231e-1
allele num: 8650
num of homozygotes: 199

Other
type: Population
allele count: 210
allele frequency: 2.317880794701987e-1
allele num: 906
num of homozygotes: 25

Latino
type: Population
allele count: 1276
allele frequency: 1.102661596958175e-1
allele num: 11572
num of homozygotes: 84

African
type: Population
allele count: 4829
allele frequency: 4.645949586299788e-1
allele num: 10394
num of homozygotes: 1105

South Asian
type: Population
allele count: 3031
allele frequency: 1.836524478914203e-1
allele num: 16504
num of homozygotes: 306

European (Non-Finnish)
type: Population
allele count: 18029
allele frequency: 2.703079552610273e-1
allele num: 66698
num of homozygotes: 2504

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

DP
type: SiteQuality
SIO_000300: 3.436105e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 1.707e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

QD
type: SiteQuality
SIO_000300: 1.861e1

GenotypeQuality
all individuals: 6712
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-2

DP
type: SiteQuality
SIO_000300: 1.975369e6

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.899e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.318e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.157e0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8
bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49829064955317e-5
allele num: 66692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 1.547e1

MQ
type: SiteQuality
SIO_000300: 5.888e1

DP
type: SiteQuality
SIO_000300: 1.975567e6

FS
type: SiteQuality
SIO_000300: 1.146e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
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variant carriers: 0

GenotypeQuality
all individuals: 112
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
all individuals: 6708
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 2671
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GenotypeQuality
all individuals: 1890
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variant carriers: 0

GenotypeQuality
all individuals: 36103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.97541e6

VQSLOD
type: SiteQuality
SIO_000300: -5.835e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-1

FS
type: SiteQuality
SIO_000300: 1.471e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQ
type: SiteQuality
SIO_000300: 4.58e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 2.467e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1022
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 35943
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 316
allele frequency: 1.914455349569853e-2
allele num: 16506
num of homozygotes: 9

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.949376199616123e-4
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

QD
type: SiteQuality
SIO_000300: 1.655e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.983153e6

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.64e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 30
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 280
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GenotypeQuality
all individuals: 2654
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variant carriers: 0

GenotypeQuality
all individuals: 35940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.898e0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 1.969551e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.801e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.066e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 6.86e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 1032
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

DP
type: SiteQuality
SIO_000300: 1.966733e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.03e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.611e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3160
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

DP
type: SiteQuality
SIO_000300: 1.966337e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.72e-1

FS
type: SiteQuality
SIO_000300: 2.908e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 1870
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 3139
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GenotypeQuality
all individuals: 2622
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.169e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

QD
type: SiteQuality
SIO_000300: 1.53e1

FS
type: SiteQuality
SIO_000300: 3.148e0

DP
type: SiteQuality
SIO_000300: 1.958511e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 1006
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6564
bin: 9.75e1
variant carriers: 14

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.502368516944005e-4
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

DP
type: SiteQuality
SIO_000300: 1.913258e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.917e0

QD
type: SiteQuality
SIO_000300: 3.462e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.958175662218681e-5
allele num: 10042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

DP
type: SiteQuality
SIO_000300: 1.790406e6

VQSLOD
type: SiteQuality
SIO_000300: -1.041e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: -1.22e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 1.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.054e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 23

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 5.526468877254218e-3
allele num: 3438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 2.297e0

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.75e-2

DP
type: SiteQuality
SIO_000300: 6.7172e5

QD
type: SiteQuality
SIO_000300: 1.359e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.564e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 8.474576271186441e-3
allele num: 1416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1314
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.72895e5

QD
type: SiteQuality
SIO_000300: 1.347e1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

FS
type: SiteQuality
SIO_000300: 1.732e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 253
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.857142857142857e-3
allele num: 1400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8676
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 6.9063e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.51e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 8.65e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.765017871555402e-5
allele num: 17346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.98676e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.39e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.427e0

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.09286e5

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.967e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.739e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 306
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 1.129177958446251e-4
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18760
num of homozygotes: 0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.623e0

DP
type: SiteQuality
SIO_000300: 7.33602e5

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 1.121579183490354e-4
allele num: 8916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19304
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

DP
type: SiteQuality
SIO_000300: 7.42444e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.927e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

QD
type: SiteQuality
SIO_000300: 9.93e0