6-109691656-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691656
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691656
    reference: chr 6
allele count: 1
allele frequency: 8.315316813570598e-6
allele num: 120260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.402C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.283C>T
  hgvsp: ENSP00000422999.1:p.Gln95Ter
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.385C>T
  hgvsp: ENSP00000309376.4:p.Gln129Ter
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.385C>T
  hgvsp: ENSP00000427546.1:p.Gln129Ter
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.346C>T
  hgvsp: ENSP00000275080.7:p.Gln116Ter
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2417C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1064C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1436C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1436C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.385C>T
  hgvsp: ENSP00000402237.2:p.Gln129Ter
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8721
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln129Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

6-109691660-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691660
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691660
    reference: chr 6
allele count: 1
allele frequency: 8.334861391255063e-6
allele num: 119978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1440A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2413A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.381A>T
  hgvsp: ENST00000413644.2:c.381A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1440A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.279A>T
  hgvsp: ENST00000504373.1:c.279A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.342A>T
  hgvsp: ENST00000275080.7:c.342A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.381A>T
  hgvsp: ENST00000310786.4:c.381A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.381A>T
  hgvsp: ENST00000512821.1:c.381A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1060A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.398A>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr127Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

6-109691661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691661
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691661
    reference: chr 6
allele count: 1
allele frequency: 8.343484572897024e-6
allele num: 119854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.278C>T
  hgvsp: ENSP00000422999.1:p.Thr93Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2412C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1441C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1441C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.380C>T
  hgvsp: ENSP00000427546.1:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.380C>T
  hgvsp: ENSP00000402237.2:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.341C>T
  hgvsp: ENSP00000275080.7:p.Thr114Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1059C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.380C>T
  hgvsp: ENSP00000309376.4:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.397C>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6475
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr127Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-109691663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691663
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691663
    reference: chr 6
allele count: 6
allele frequency: 5.023779221649139e-5
allele num: 119432
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.395C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.378C>T
  hgvsp: ENST00000310786.4:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.339C>T
  hgvsp: ENST00000275080.7:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.378C>T
  hgvsp: ENST00000413644.2:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1057C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1443C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.276C>T
  hgvsp: ENST00000504373.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.378C>T
  hgvsp: ENST00000512821.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1443C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2410C>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8711
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro126Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

6-109691665-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691665
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691665
    reference: chr 6
allele count: 1
allele frequency: 8.373666493610892e-6
allele num: 119422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.393C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2408C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.376C>T
  hgvsp: ENSP00000309376.4:p.Pro126Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1445C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.376C>T
  hgvsp: ENSP00000402237.2:p.Pro126Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.337C>T
  hgvsp: ENSP00000275080.7:p.Pro113Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.376C>T
  hgvsp: ENSP00000427546.1:p.Pro126Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1055C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1445C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.274C>T
  hgvsp: ENSP00000422999.1:p.Pro92Ser
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro126Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-109691667-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691667
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691667
    reference: chr 6
allele count: 1
allele frequency: 8.406328283932143e-6
allele num: 118958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1447A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1053A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.391A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2406A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.374A>G
  hgvsp: ENSP00000309376.4:p.Lys125Arg
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1447A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.374A>G
  hgvsp: ENSP00000427546.1:p.Lys125Arg
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.374A>G
  hgvsp: ENSP00000402237.2:p.Lys125Arg
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.272A>G
  hgvsp: ENSP00000422999.1:p.Lys91Arg
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.335A>G
  hgvsp: ENSP00000275080.7:p.Lys112Arg
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys125Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

6-109691671-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691671
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691671
    reference: chr 6
allele count: 1
allele frequency: 8.456516591685553e-6
allele num: 118252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.371-1G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.388-1G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.269-1G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1050-1G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2402G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1451G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.371-1G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.371-1G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.332-1G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1451G>C
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.75e1
  variant carriers: 0
hgvs: c.371-1G>C
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

6-109691676-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691676
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691676
    reference: chr 6
allele count: 2
allele frequency: 1.714177965956426e-5
allele num: 116674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1050-6T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.371-6T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2397T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.269-6T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.332-6T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1456T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.388-6T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.371-6T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.371-6T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1456T>C
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
hgvs: c.371-6T>C
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/6-109691683-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691683
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691682
    reference: chr 6
allele count: 3
allele frequency: 2.624809701296656e-5
allele num: 114294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2389delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1464delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.269-14delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.332-14delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.371-14delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.371-14delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.388-14delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.371-14delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1464delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1050-14delT
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CA
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-109691688-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691688
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691688
    reference: chr 6
allele count: 1
allele frequency: 8.926499205541571e-6
allele num: 112026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.388-18A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.371-18A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1050-18A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.269-18A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1468A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.371-18A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.332-18A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2385A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.371-18A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1468A>C
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/6-109691702-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691702
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691702
    reference: chr 6
allele count: 1
allele frequency: 9.420453689049665e-6
allele num: 106152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.388-32T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.371-32T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1050-32T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1482T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2371T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.371-32T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1482T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.371-32T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.332-32T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.269-32T>G
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7024
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

6-109691706-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109691706
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109691705
    reference: chr 6
allele count: 1
allele frequency: 9.629087547663984e-6
allele num: 103852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000415861
  gene symbol: CD164
  hgvsc: ENST00000415861.2:n.2366delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.332-37delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.371-37delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.269-37delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.388-37delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.371-37delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.332-1487delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.371-37delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.371-1487delT
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1050-37delT
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8877
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: TA
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

6-109697235-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697235
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697235
    reference: chr 6
allele count: 1
allele frequency: 8.686135191008112e-6
allele num: 115126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1049+42T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.370+42T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.268+42T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.445T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.370+42T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.370+42T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.387+42T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1868T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1868T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.370+42T>C
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

6-109697242-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697242
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697242
    reference: chr 6
allele count: 3
allele frequency: 2.603398302584307e-5
allele num: 115234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.438C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.387+35C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.370+35C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.370+35C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1861C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.370+35C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1049+35C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1861C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.268+35C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.370+35C>G
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25314
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

6-109697249-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697249
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697249
    reference: chr 6
allele count: 1
allele frequency: 8.640353908896108e-6
allele num: 115736
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.370+28T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.431T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.370+28T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.370+28T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1854T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1854T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.387+28T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1049+28T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.370+28T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.268+28T>C
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

6-109697261-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697261
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697261
    reference: chr 6
allele count: 1
allele frequency: 8.598304414369486e-6
allele num: 116302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.370+16T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1842T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.419T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.370+16T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1842T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.268+16T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1049+16T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.370+16T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.387+16T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.370+16T>C
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

6-109697263-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697263
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697262
    reference: chr 6
allele count: 1
allele frequency: 8.593723144615173e-6
allele num: 116364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.416delG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1049+13delG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1839delG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.370+13delG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.370+13delG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.370+13delG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.387+13delG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.268+13delG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.370+13delG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1839delG
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28814
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: TC
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

6-109697265-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697265
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697265
    reference: chr 6
allele count: 2
allele frequency: 1.717858860716004e-5
allele num: 116424
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.415T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.370+12T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.387+12T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1049+12T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1838T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.370+12T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1838T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.268+12T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.370+12T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.370+12T>C
  variant of: http://identifiers.org/hgnc/1632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17818
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-109697285-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697285
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697285
    reference: chr 6
allele count: 9
allele frequency: 7.745133474466877e-5
allele num: 116202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.362A>G
  hgvsp: ENSP00000402237.2:p.Asn121Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.362A>G
  hgvsp: ENSP00000427546.1:p.Asn121Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.379A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.362A>G
  hgvsp: ENSP00000314177.5:p.Asn121Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.260A>G
  hgvsp: ENSP00000422999.1:p.Asn87Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.395A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.362A>G
  hgvsp: ENSP00000309376.4:p.Asn121Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1041A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1818A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1818A>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18503
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27754
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn121Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

6-109697290-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697290
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697290
    reference: chr 6
allele count: 1
allele frequency: 8.625299729165588e-6
allele num: 115938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1813A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.374A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.255A>G
  hgvsp: ENST00000504373.1:c.255A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.357A>G
  hgvsp: ENST00000310786.4:c.357A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.390A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.357A>G
  hgvsp: ENST00000324953.5:c.357A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.357A>G
  hgvsp: ENST00000413644.2:c.357A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1813A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.357A>G
  hgvsp: ENST00000512821.1:c.357A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1036A>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr119Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-109697298-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697298
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697298
    reference: chr 6
allele count: 1
allele frequency: 8.691570914527092e-6
allele num: 115054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.349G>T
  hgvsp: ENSP00000427546.1:p.Val117Leu
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.349G>T
  hgvsp: ENSP00000314177.5:p.Val117Leu
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.247G>T
  hgvsp: ENSP00000422999.1:p.Val83Leu
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.349G>T
  hgvsp: ENSP00000309376.4:p.Val117Leu
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1805G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.382G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.349G>T
  hgvsp: ENSP00000402237.2:p.Val117Leu
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1805G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.366G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1028G>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40613
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val117Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

6-109697304-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697304
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697304
    reference: chr 6
allele count: 1
allele frequency: 8.769314414999035e-6
allele num: 114034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.343A>G
  hgvsp: ENSP00000314177.5:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.360A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.241A>G
  hgvsp: ENSP00000422999.1:p.Thr81Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.376A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.343A>G
  hgvsp: ENSP00000427546.1:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1799A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.343A>G
  hgvsp: ENSP00000309376.4:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1799A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.343A>G
  hgvsp: ENSP00000402237.2:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1022A>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr115Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

6-109697308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697308
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697308
    reference: chr 6
allele count: 11
allele frequency: 9.752637645181311e-5
allele num: 112790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.356G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.339G>A
  hgvsp: ENST00000310786.4:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1795G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.237G>A
  hgvsp: ENST00000504373.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1018G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.372G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.339G>A
  hgvsp: ENST00000324953.5:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.339G>A
  hgvsp: ENST00000413644.2:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.339G>A
  hgvsp: ENST00000512821.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1795G>A
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22288
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr113Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

6-109697328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697328
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697328
    reference: chr 6
allele count: 4
allele frequency: 3.773656106718995e-5
allele num: 105998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1775C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-13C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1775C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-13C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-13C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-13C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-13C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-13C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-13C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-13C>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15123
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14206
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

6-109697336-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697336
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697336
    reference: chr 6
allele count: 10
allele frequency: 9.497036924479562e-5
allele num: 105296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-21T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1767T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-21T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1767T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-21T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-21T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-21T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-21T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-21T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-21T>C
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13323
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/6-109697340-ACC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697340
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697338
    reference: chr 6
allele count: 1
allele frequency: 9.573225602634552e-6
allele num: 104458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-27_332-26delGG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-27_365-26delGG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-27_332-26delGG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-27_332-26delGG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-27_349-26delGG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1761_331+1762delGG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-27_332-26delGG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-27_1011-26delGG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1761_331+1762delGG
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-27_230-26delGG
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: ACC
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-109697342-C-CAAGAAAAAGAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697342
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697355
    reference: chr 6
allele count: 1
allele frequency: 9.682041748964022e-6
allele num: 103284
alternate allele: CAAGAAAAAGAAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4968
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

6-109697344-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697344
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697344
    reference: chr 6
allele count: 1
allele frequency: 9.70817233947537e-6
allele num: 103006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1759A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-29A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-29A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-29A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1759A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-29A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-29A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-29A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-29A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-29A>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 19533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

6-109697346-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697346
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697346
    reference: chr 6
allele count: 1
allele frequency: 9.774788864560526e-6
allele num: 102304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-31A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-31A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-31A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-31A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-31A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-31A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1757A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1757A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-31A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-31A>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

6-109697346-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697346
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697346
    reference: chr 6
allele count: 3
allele frequency: 2.932436659368158e-5
allele num: 102304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1757A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1757A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-31A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-31A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-31A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-31A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-31A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-31A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-31A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-31A>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/6-109697348-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697348
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697348
    reference: chr 6
allele count: 1
allele frequency: 9.847947687701884e-6
allele num: 101544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1755G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-33G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-33G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-33G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1755G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-33G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-33G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-33G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-33G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-33G>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff

6-109697348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697348
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697348
    reference: chr 6
allele count: 2
allele frequency: 1.969589537540377e-5
allele num: 101544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-33G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-33G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-33G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-33G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1755G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1755G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-33G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-33G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-33G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-33G>A
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10544
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16999
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

6-109697350-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697350
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697350
    reference: chr 6
allele count: 1
allele frequency: 9.94253216409155e-6
allele num: 100578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1753A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-35A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-35A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-35A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-35A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-35A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1753A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-35A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-35A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-35A>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5663
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

6-109697351-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697351
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697351
    reference: chr 6
allele count: 22
allele frequency: 2.194688852975799e-4
allele num: 100242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-36G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-36G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-36G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-36G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1752G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-36G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-36G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-36G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-36G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1752G>C
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12231
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20018
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

6-109697360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109697360
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109697360
    reference: chr 6
allele count: 1
allele frequency: 1.033292690487508e-5
allele num: 96778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+1743A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.230-45A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.349-45A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.332-45A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.332-45A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.365-45A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+1743A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.332-45A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.332-45A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1011-45A>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18924
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/6-109699052-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699052
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699052
    reference: chr 6
allele count: 4
allele frequency: 3.301365114474835e-5
allele num: 121162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+51G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+51G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+51G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+51G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+51G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+51G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+51G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+51G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+51G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+51G>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23585
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10083
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-109699053-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699053
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699053
    reference: chr 6
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+50A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+50A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+50A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+50A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+50A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+50A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+50A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+50A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+50A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+50A>C
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

6-109699068-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699068
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699068
    reference: chr 6
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+35G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+35G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+35G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+35G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+35G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+35G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+35G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+35G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+35G>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+35G>C
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

6-109699068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699068
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699068
    reference: chr 6
allele count: 4
allele frequency: 3.3000033000033e-5
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+35G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+35G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+35G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+35G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+35G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+35G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+35G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+35G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+35G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+35G>A
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3984
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30397
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

6-109699069-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699069
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699069
    reference: chr 6
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+34C>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+34C>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+34C>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+34C>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+34C>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+34C>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+34C>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+34C>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+34C>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+34C>A
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

6-109699069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699069
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699069
    reference: chr 6
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+34C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+34C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+34C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+34C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+34C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+34C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+34C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+34C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+34C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+34C>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

6-109699070-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699070
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699070
    reference: chr 6
allele count: 6
allele frequency: 4.948943400583975e-5
allele num: 121238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+33C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+33C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+33C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+33C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+33C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+33C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+33C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+33C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+33C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+33C>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-109699085-GCCAATATGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699085
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699075
    reference: chr 6
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16378
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6520
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: c.331+8_331+17delTTCATATTGG
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: GCCAATATGAA
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

6-109699090-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699090
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699090
    reference: chr 6
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+13A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+13A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+13A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+13A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+13A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+13A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+13A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+13A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+13A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+13A>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/6-109699091-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699091
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699091
    reference: chr 6
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+12T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+12T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+12T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+12T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+12T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+12T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+12T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+12T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+12T>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+12T>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

6-109699092-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699092
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699092
    reference: chr 6
allele count: 33
allele frequency: 2.721021125018552e-4
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331+11A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331+11A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229+11A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348+11A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331+11A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331+11A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010+11A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364+11A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331+11A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331+11A>C
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-109699103-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699103
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699103
    reference: chr 6
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331G>T
  hgvsp: ENSP00000314177.5:p.Val111Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331G>T
  hgvsp: ENSP00000275080.7:p.Ala111Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331G>T
  hgvsp: ENSP00000357957.5:p.Gly111Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331G>T
  hgvsp: ENSP00000402237.2:p.Val111Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010G>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331G>T
  hgvsp: ENSP00000427546.1:p.Val111Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331G>T
  hgvsp: ENSP00000309376.4:p.Val111Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229G>T
  hgvsp: ENSP00000422999.1:p.Val77Phe
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val111Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

6-109699103-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699103
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699103
    reference: chr 6
allele count: 3
allele frequency: 2.473696362017217e-5
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.364G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.331G>A
  hgvsp: ENSP00000402237.2:p.Val111Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.331G>A
  hgvsp: ENSP00000357957.5:p.Gly111Ser
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.331G>A
  hgvsp: ENSP00000427546.1:p.Val111Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.331G>A
  hgvsp: ENSP00000314177.5:p.Val111Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.229G>A
  hgvsp: ENSP00000422999.1:p.Val77Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.348G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.331G>A
  hgvsp: ENSP00000309376.4:p.Val111Ile
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.331G>A
  hgvsp: ENSP00000275080.7:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1010G>A
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val111Ile
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

6-109699104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699104
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699104
    reference: chr 6
allele count: 31
allele frequency: 2.556068601583114e-4
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.330C>T
  hgvsp: ENST00000413644.2:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.228C>T
  hgvsp: ENST00000504373.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.330C>T
  hgvsp: ENST00000512821.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.330C>T
  hgvsp: ENST00000368961.5:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.363C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.347C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.330C>T
  hgvsp: ENST00000310786.4:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.330C>T
  hgvsp: ENST00000275080.7:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1009C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.330C>T
  hgvsp: ENST00000324953.5:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24028
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.330C>T
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

6-109699105-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699105
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699105
    reference: chr 6
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.329C>G
  hgvsp: ENSP00000309376.4:p.Ser110Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.329C>G
  hgvsp: ENSP00000427546.1:p.Ser110Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.329C>G
  hgvsp: ENSP00000402237.2:p.Ser110Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.362C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.227C>G
  hgvsp: ENSP00000422999.1:p.Ser76Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.329C>G
  hgvsp: ENSP00000314177.5:p.Ser110Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.346C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.329C>G
  hgvsp: ENSP00000357957.5:p.Ser110Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1008C>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.329C>G
  hgvsp: ENSP00000275080.7:p.Ser110Cys
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser110Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

6-109699113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699113
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699113
    reference: chr 6
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.321C>T
  hgvsp: ENST00000324953.5:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.1000C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.321C>T
  hgvsp: ENST00000413644.2:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.321C>T
  hgvsp: ENST00000368961.5:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.321C>T
  hgvsp: ENST00000310786.4:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.338C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.321C>T
  hgvsp: ENST00000512821.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.219C>T
  hgvsp: ENST00000504373.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.354C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.321C>T
  hgvsp: ENST00000275080.7:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp107Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

6-109699114-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699114
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699114
    reference: chr 6
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.320A>C
  hgvsp: ENSP00000314177.5:p.Asp107Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.320A>C
  hgvsp: ENSP00000309376.4:p.Asp107Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.337A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.999A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.320A>C
  hgvsp: ENSP00000427546.1:p.Asp107Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.320A>C
  hgvsp: ENSP00000275080.7:p.Asp107Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.353A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.218A>C
  hgvsp: ENSP00000422999.1:p.Asp73Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.320A>C
  hgvsp: ENSP00000402237.2:p.Asp107Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.320A>C
  hgvsp: ENSP00000357957.5:p.Asp107Ala
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6454
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp107Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-109699115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699115
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699115
    reference: chr 6
allele count: 2
allele frequency: 1.649294102124291e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.336G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.217G>A
  hgvsp: ENSP00000422999.1:p.Asp73Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.352G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.319G>A
  hgvsp: ENSP00000402237.2:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.319G>A
  hgvsp: ENSP00000275080.7:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.319G>A
  hgvsp: ENSP00000309376.4:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.319G>A
  hgvsp: ENSP00000427546.1:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.319G>A
  hgvsp: ENSP00000357957.5:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.998G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.319G>A
  hgvsp: ENSP00000314177.5:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp107Asn
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

6-109699119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699119
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699119
    reference: chr 6
allele count: 3
allele frequency: 2.474063566939913e-5
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.315G>A
  hgvsp: ENST00000512821.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.315G>A
  hgvsp: ENST00000310786.4:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.315G>A
  hgvsp: ENST00000413644.2:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.213G>A
  hgvsp: ENST00000504373.1:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.315G>A
  hgvsp: ENST00000275080.7:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.332G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.315G>A
  hgvsp: ENST00000324953.5:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.315G>A
  hgvsp: ENST00000368961.5:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.348G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.994G>A
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10158
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr105Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

6-109699128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699128
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699128
    reference: chr 6
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.306G>A
  hgvsp: ENST00000275080.7:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.306G>A
  hgvsp: ENST00000310786.4:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.306G>A
  hgvsp: ENST00000512821.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.204G>A
  hgvsp: ENST00000504373.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.323G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.306G>A
  hgvsp: ENST00000368961.5:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.306G>A
  hgvsp: ENST00000413644.2:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.339G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.985G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.306G>A
  hgvsp: ENST00000324953.5:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val102Val
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

6-109699131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699131
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699131
    reference: chr 6
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.303A>G
  hgvsp: ENST00000368961.5:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.201A>G
  hgvsp: ENST00000504373.1:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.320A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.303A>G
  hgvsp: ENST00000413644.2:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.336A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.303A>G
  hgvsp: ENST00000512821.1:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.303A>G
  hgvsp: ENST00000275080.7:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.303A>G
  hgvsp: ENST00000324953.5:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.303A>G
  hgvsp: ENST00000310786.4:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.982A>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6445
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln101Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

6-109699133-GACAATCACTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699133
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699123
    reference: chr 6
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsp: ENSP00000427546.1:p.Ser98LysfsTer44
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsp: ENSP00000422999.1:p.Ser64LysfsTer49
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsp: ENSP00000309376.4:p.Ser98LysfsTer49
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsp: ENSP00000314177.5:p.Ser98LysfsTer30
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsp: ENSP00000275080.7:p.Ser98LysfsTer36
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsp: ENSP00000402237.2:p.Ser98LysfsTer49
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsp: ENSP00000357957.5:p.Ser98LysfsTer17
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser98LysfsTer49
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: GACAATCACTA
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-109699139-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699139
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699139
    reference: chr 6
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.295G>A
  hgvsp: ENSP00000357957.5:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.974G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.295G>A
  hgvsp: ENSP00000275080.7:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.295G>A
  hgvsp: ENSP00000427546.1:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.193G>A
  hgvsp: ENSP00000422999.1:p.Asp65Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.295G>A
  hgvsp: ENSP00000314177.5:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.295G>A
  hgvsp: ENSP00000309376.4:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.295G>A
  hgvsp: ENSP00000402237.2:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.312G>A
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.328G>A
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp99Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

6-109699146-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699146
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699146
    reference: chr 6
allele count: 2
allele frequency: 1.651145895251304e-5
allele num: 121128
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.288A>G
  hgvsp: ENST00000310786.4:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.288A>G
  hgvsp: ENST00000324953.5:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.321A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.305A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.288A>G
  hgvsp: ENST00000413644.2:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.186A>G
  hgvsp: ENST00000504373.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.288A>G
  hgvsp: ENST00000512821.1:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.288A>G
  hgvsp: ENST00000368961.5:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.967A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.288A>G
  hgvsp: ENST00000275080.7:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr96Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

6-109699148-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699148
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699148
    reference: chr 6
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.286A>G
  hgvsp: ENSP00000357957.5:p.Thr96Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.303A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.286A>G
  hgvsp: ENSP00000402237.2:p.Thr96Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.286A>G
  hgvsp: ENSP00000427546.1:p.Thr96Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.286A>G
  hgvsp: ENSP00000314177.5:p.Thr96Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.319A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.184A>G
  hgvsp: ENSP00000422999.1:p.Thr62Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.286A>G
  hgvsp: ENSP00000275080.7:p.Thr96Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.965A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.286A>G
  hgvsp: ENSP00000309376.4:p.Thr96Ala
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr96Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

6-109699155-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699155
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699155
    reference: chr 6
allele count: 1
allele frequency: 8.258865892535638e-6
allele num: 121082
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.279T>C
  hgvsp: ENST00000310786.4:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.279T>C
  hgvsp: ENST00000324953.5:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.279T>C
  hgvsp: ENST00000512821.1:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.279T>C
  hgvsp: ENST00000413644.2:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.177T>C
  hgvsp: ENST00000504373.1:c.177T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.279T>C
  hgvsp: ENST00000368961.5:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.279T>C
  hgvsp: ENST00000275080.7:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.958T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.312T>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.296T>C
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His93His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

6-109699157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699157
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699157
    reference: chr 6
allele count: 2
allele frequency: 1.65196418541646e-5
allele num: 121068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.175C>T
  hgvsp: ENSP00000422999.1:p.His59Tyr
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.310C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.277C>T
  hgvsp: ENSP00000402237.2:p.His93Tyr
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.277C>T
  hgvsp: ENSP00000314177.5:p.His93Tyr
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.956C>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.277C>T
  hgvsp: ENSP00000357957.5:p.His93Tyr
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.277C>T
  hgvsp: ENSP00000427546.1:p.His93Tyr
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.277C>T
  hgvsp: ENSP00000275080.7:p.His93Tyr
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.277C>T
  hgvsp: ENSP00000309376.4:p.His93Tyr
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.294C>T
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His93Tyr
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

6-109699158-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699158
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699158
    reference: chr 6
allele count: 28
allele frequency: 2.312902692879564e-4
allele num: 121060
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.276A>G
  hgvsp: ENST00000310786.4:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.276A>G
  hgvsp: ENST00000275080.7:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.276A>G
  hgvsp: ENST00000368961.5:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.174A>G
  hgvsp: ENST00000504373.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.276A>G
  hgvsp: ENST00000324953.5:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.276A>G
  hgvsp: ENST00000512821.1:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.309A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.293A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.276A>G
  hgvsp: ENST00000413644.2:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.955A>G
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser92Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-109699158-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699158
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699158
    reference: chr 6
allele count: 2
allele frequency: 1.652073352056831e-5
allele num: 121060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.955A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.293A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.276A>C
  hgvsp: ENST00000512821.1:c.276A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.309A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.276A>C
  hgvsp: ENST00000275080.7:c.276A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.276A>C
  hgvsp: ENST00000368961.5:c.276A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.174A>C
  hgvsp: ENST00000504373.1:c.174A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.276A>C
  hgvsp: ENST00000324953.5:c.276A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.276A>C
  hgvsp: ENST00000310786.4:c.276A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.276A>C
  hgvsp: ENST00000413644.2:c.276A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser92Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

6-109699165-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699165
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699165
    reference: chr 6
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.286A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.269A>T
  hgvsp: ENSP00000309376.4:p.Tyr90Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.269A>T
  hgvsp: ENSP00000314177.5:p.Tyr90Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.302A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.269A>T
  hgvsp: ENSP00000427546.1:p.Tyr90Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.167A>T
  hgvsp: ENSP00000422999.1:p.Tyr56Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.269A>T
  hgvsp: ENSP00000357957.5:p.Tyr90Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.948A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.269A>T
  hgvsp: ENSP00000275080.7:p.Tyr90Phe
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.269A>T
  hgvsp: ENSP00000402237.2:p.Tyr90Phe
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr90Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

6-109699165-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699165
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699165
    reference: chr 6
allele count: 5
allele frequency: 4.132368012165691e-5
allele num: 120996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.269A>G
  hgvsp: ENSP00000314177.5:p.Tyr90Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.269A>G
  hgvsp: ENSP00000427546.1:p.Tyr90Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.269A>G
  hgvsp: ENSP00000309376.4:p.Tyr90Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.269A>G
  hgvsp: ENSP00000275080.7:p.Tyr90Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.286A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.269A>G
  hgvsp: ENSP00000402237.2:p.Tyr90Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.269A>G
  hgvsp: ENSP00000357957.5:p.Tyr90Cys
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.948A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.302A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.167A>G
  hgvsp: ENSP00000422999.1:p.Tyr56Cys
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr90Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

6-109699171-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699171
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699171
    reference: chr 6
allele count: 4
allele frequency: 3.307479865716317e-5
allele num: 120938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.263A>G
  hgvsp: ENSP00000427546.1:p.Glu88Gly
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.161A>G
  hgvsp: ENSP00000422999.1:p.Glu54Gly
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.296A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.263A>G
  hgvsp: ENSP00000314177.5:p.Glu88Gly
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.263A>G
  hgvsp: ENSP00000309376.4:p.Glu88Gly
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.263A>G
  hgvsp: ENSP00000357957.5:p.Glu88Gly
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.263A>G
  hgvsp: ENSP00000402237.2:p.Glu88Gly
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.942A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.280A>G
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.263A>G
  hgvsp: ENSP00000275080.7:p.Glu88Gly
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu88Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD

6-109699174-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699174
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699174
    reference: chr 6
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.939A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.260A>T
  hgvsp: ENSP00000275080.7:p.Asp87Val
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.158A>T
  hgvsp: ENSP00000422999.1:p.Asp53Val
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.260A>T
  hgvsp: ENSP00000314177.5:p.Asp87Val
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.260A>T
  hgvsp: ENSP00000357957.5:p.Asp87Val
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.260A>T
  hgvsp: ENSP00000427546.1:p.Asp87Val
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.260A>T
  hgvsp: ENSP00000309376.4:p.Asp87Val
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.293A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.277A>T
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.260A>T
  hgvsp: ENSP00000402237.2:p.Asp87Val
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp87Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum

6-109699174-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109699174
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 109699174
    reference: chr 6
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000402237
  ensembl transcript: ENST00000413644
  gene symbol: CD164
  hgvsc: ENST00000413644.2:c.260A>C
  hgvsp: ENSP00000402237.2:p.Asp87Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000422999
  ensembl transcript: ENST00000504373
  gene symbol: CD164
  hgvsc: ENST00000504373.1:c.158A>C
  hgvsp: ENSP00000422999.1:p.Asp53Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000427546
  ensembl transcript: ENST00000512821
  gene symbol: CD164
  hgvsc: ENST00000512821.1:c.260A>C
  hgvsp: ENSP00000427546.1:p.Asp87Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000309376
  ensembl transcript: ENST00000310786
  gene symbol: CD164
  hgvsc: ENST00000310786.4:c.260A>C
  hgvsp: ENSP00000309376.4:p.Asp87Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000506649
  gene symbol: CD164
  hgvsc: ENST00000506649.1:n.277A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000357957
  ensembl transcript: ENST00000368961
  gene symbol: CD164
  hgvsc: ENST00000368961.5:c.260A>C
  hgvsp: ENSP00000357957.5:p.Asp87Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000314177
  ensembl transcript: ENST00000324953
  gene symbol: CD164
  hgvsc: ENST00000324953.5:c.260A>C
  hgvsp: ENSP00000314177.5:p.Asp87Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000512212
  gene symbol: CD164
  hgvsc: ENST00000512212.1:n.293A>C
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl protein: ENSP00000275080
  ensembl transcript: ENST00000275080
  gene symbol: CD164
  hgvsc: ENST00000275080.7:c.260A>C
  hgvsp: ENSP00000275080.7:p.Asp87Ala
  variant of: http://identifiers.org/hgnc/1632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135535
  ensembl transcript: ENST00000499860
  gene symbol: CD164
  hgvsc: ENST00000499860.2:n.939A>C
  variant of: http://identifiers.org/hgnc/1632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp87Ala
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41322
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6499
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5600
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 792
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513592056668887e-5
allele num: 66068
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.866171e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.487e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.857e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.81e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 5.23e0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5599
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51758885482745e-5
allele num: 65894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.489e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

MQRankSum
type: SiteQuality
SIO_000300: -1.931e0

MQ
type: SiteQuality
SIO_000300: 5.842e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

DP
type: SiteQuality
SIO_000300: 1.861818e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

QD
type: SiteQuality
SIO_000300: 1.058e1

GenotypeQuality
all individuals: 1725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5599
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51952590791673e-5
allele num: 65810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.852e0

DP
type: SiteQuality
SIO_000300: 1.860126e6

VQSLOD
type: SiteQuality
SIO_000300: -1.611e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.957e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 1069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5599
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6367
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163873370577281e-4
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.62660158633313e-5
allele num: 65560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.853266e6

FS
type: SiteQuality
SIO_000300: 1.465e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.203e1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.853355e6

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

QD
type: SiteQuality
SIO_000300: 7.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.638e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532379171902295e-5
allele num: 65258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

FS
type: SiteQuality
SIO_000300: 4.436e0

DP
type: SiteQuality
SIO_000300: 1.843797e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeQuality
all individuals: 377
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38476
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5594
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1520
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.951e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.727e0

MQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

QD
type: SiteQuality
SIO_000300: 1.573e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.83083e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.371354043158644e-4
allele num: 8434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15820
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

QD
type: SiteQuality
SIO_000300: 1.129e1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

DP
type: SiteQuality
SIO_000300: 1.794599e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 338
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.794323520951194e-5
allele num: 62574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.024e1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 4.524e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 1.737458e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 9.76e0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631002087682672e-5
allele num: 61312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15212
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

FS
type: SiteQuality
SIO_000300: 2.397e0

DP
type: SiteQuality
SIO_000300: 1.656315e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.231e1

GenotypeQuality
all individuals: 1129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 877
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variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 888
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variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.73178165696869e-5
allele num: 57744
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.303e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.096e-1

DP
type: SiteQuality
SIO_000300: 1.383612e6

QD
type: SiteQuality
SIO_000300: 6.96e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

GenotypeQuality
all individuals: 1433
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 6.75e1
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GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.101806963420009e-4
allele num: 9076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7154
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.149999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQ
type: SiteQuality
SIO_000300: 6.229e1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.93e-1

DP
type: SiteQuality
SIO_000300: 1.321967e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.481e0

QD
type: SiteQuality
SIO_000300: 1.584e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.236093943139679e-4
allele num: 8090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63458
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e-1

DP
type: SiteQuality
SIO_000300: 1.441998e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.235177865612648e-4
allele num: 8096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63542
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.264222503160556e-4
allele num: 15820
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.241e1

FS
type: SiteQuality
SIO_000300: 1.931e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

DP
type: SiteQuality
SIO_000300: 1.479151e6

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 241
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GenotypeQuality
all individuals: 118
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63830
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.298815822625347e-5
allele num: 15876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 2.304e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e0

BaseQRankSum
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SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 1.507684e6

VQSLOD
type: SiteQuality
SIO_000300: -1.926e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10960
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558214909000249e-5
allele num: 64176
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.659e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.234e0

DP
type: SiteQuality
SIO_000300: 1.529653e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64226
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.275100401606425e-5
allele num: 15936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.603e0

QD
type: SiteQuality
SIO_000300: 1.598e1

MQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

DP
type: SiteQuality
SIO_000300: 1.531603e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.435460301997078e-4
allele num: 8212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.533513e6

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 9.17e0

FS
type: SiteQuality
SIO_000300: 9.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.125752874612155e-5
allele num: 10958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.247038284075321e-4
allele num: 64152
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e1

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 4.031e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.537257e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.222195062331948e-4
allele num: 8182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

FS
type: SiteQuality
SIO_000300: 7.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.41e-2

DP
type: SiteQuality
SIO_000300: 1.533245e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 8.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576093809103518e-5
allele num: 63448
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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SIO_000300: -4.4e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15718
num of homozygotes: 0

African
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allele frequency: 1.05999576001696e-4
allele num: 9434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62804
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.503792e6

VQSLOD
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ClippingRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 1.217e0

BaseQRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 4.99e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.839021872378863e-5
allele num: 61996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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African
type: Population
allele count: 6
allele frequency: 6.43915003219575e-4
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
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Latino
type: Population
allele count: 2
allele frequency: 1.87125748502994e-4
allele num: 10688
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 6.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.324e1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

DP
type: SiteQuality
SIO_000300: 1.482393e6

MQ
type: SiteQuality
SIO_000300: 5.918e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14976
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.295684113865932e-4
allele num: 8712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.462723778524187e-5
allele num: 57758
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.287e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.174e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 1.4207e1

DP
type: SiteQuality
SIO_000300: 1.313028e6

QD
type: SiteQuality
SIO_000300: 3.14e0

VQSLOD
type: SiteQuality
SIO_000300: -4.693e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.271e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 269
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.631853785900783e-4
allele num: 6128
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.210653753026634e-3
allele num: 7434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 1.255195e6

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.760129545534551e-5
allele num: 56814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7372
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.210764e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e0

FS
type: SiteQuality
SIO_000300: 3.897e0

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.133e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 308
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.780817038857428e-5
allele num: 56154
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e0

MQ
type: SiteQuality
SIO_000300: 5.096e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.161e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 3.897e0

QD
type: SiteQuality
SIO_000300: 2.94e0

DP
type: SiteQuality
SIO_000300: 1.176387e6

GenotypeQuality
all individuals: 304
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 682
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.785522979680749e-5
allele num: 56006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7294
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.947e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.303e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 1.165513e6

VQSLOD
type: SiteQuality
SIO_000300: -5.932e0

MQ
type: SiteQuality
SIO_000300: 5.108e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.0e0

QD
type: SiteQuality
SIO_000300: 1.259e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

GenotypeQuality
all individuals: 1023
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5316
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.801412307248883e-5
allele num: 55512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 4.767e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.142928e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 3.06435137895812e-4
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

FS
type: SiteQuality
SIO_000300: 4.767e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.816002615043766e-5
allele num: 55066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.937699458859442e-5
allele num: 14414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.202212070209185e-4
allele num: 8318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQRankSum
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SIO_000300: 2.87e-1

BaseQRankSum
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SIO_000300: -2.434e0

DP
type: SiteQuality
SIO_000300: 1.12219e6

VQSLOD
type: SiteQuality
SIO_000300: 7.44e-1

QD
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SIO_000300: 1.068e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.835940368656826e-5
allele num: 54468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.422e0

VQSLOD
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SIO_000300: -5.895e0

MQRankSum
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SIO_000300: -6.851e0

InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 1.098776e6

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.103e1

BaseQRankSum
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SIO_000300: -1.082e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 4
allele frequency: 4.152823920265781e-4
allele num: 9632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7130
num of homozygotes: 0

European (Non-Finnish)
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allele count: 17
allele frequency: 3.132024024466635e-4
allele num: 54278
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14260
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.275510204081633e-3
allele num: 784
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.041e0

ClippingRankSum
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SIO_000300: -2.44e-1

MQRankSum
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InbreedingCoeff
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SIO_000300: -6.0e-3

QD
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DP
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SIO_000300: 1.096862e6

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

ReadPosRankSum
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SIO_000300: 2.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.273236567354214e-4
allele num: 7854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.279e1

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

DP
type: SiteQuality
SIO_000300: 1.044084e6

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

African
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allele count: 4
allele frequency: 3.846893633391037e-4
allele num: 10398
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.528e0

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.96306e6

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 1.663e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.444e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
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DP
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.502070952638214e-5
allele num: 66636
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.924187030979411e-4
allele num: 10394
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.968324e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 3.5e-3

VQSLOD
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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DP
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BaseQRankSum
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SIO_000300: 3.21e0

ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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SIO_000300: -4.41e-1

QD
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ClippingRankSum
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SIO_000300: -2.8e-2

VQSLOD
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SIO_000300: 1.89e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 6.934812760055479e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 3.4e-3

FS
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SIO_000300: 5.212e0

QD
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SIO_000300: 1.177e1

MQRankSum
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ClippingRankSum
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DP
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MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 6.65e-1

BaseQRankSum
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SIO_000300: 1.38e0

ReadPosRankSum
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SIO_000300: -2.2e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

DP
type: SiteQuality
SIO_000300: 1.970741e6

MQRankSum
type: SiteQuality
SIO_000300: -1.739e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.71e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.651e0

QD
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
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SIO_000300: 1.970998e6

BaseQRankSum
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SIO_000300: 2.93e0

FS
type: SiteQuality
SIO_000300: 2.571e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

MQRankSum
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.318e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 33

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele num: 66664
num of homozygotes: 0

African
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European (Finnish)
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Other
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Latino
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allele num: 11554
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East Asian
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South Asian
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MQ
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Other
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.500180007200288e-5
allele num: 66664
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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DP
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BaseQRankSum
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SIO_000300: -5.01e-1

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.989963661533137e-3
allele num: 11558
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African
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allele num: 10380
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.05913717886573e-5
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European (Non-Finnish)
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allele frequency: 7.50030001200048e-5
allele num: 66664
num of homozygotes: 0

East Asian
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
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Other
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South Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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VQSLOD
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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South Asian
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VQSLOD
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SIO_000300: -3.658e-1

InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 2.13e0

FS
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SIO_000300: 4.59e0

MQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.039e1

DP
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SIO_000300: 1.968947e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele num: 16506
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Other
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ReadPosRankSum
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FS
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ClippingRankSum
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QD
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MQ
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

East Asian
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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East Asian
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Latino
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Other
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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FS
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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SIO_000300: 4.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.364e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.77e-1

DP
type: SiteQuality
SIO_000300: 1.968099e6

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.407e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.687e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 1.695e0

VQSLOD
type: SiteQuality
SIO_000300: -9.143e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e0

DP
type: SiteQuality
SIO_000300: 1.967657e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.406e0

DP
type: SiteQuality
SIO_000300: 1.967476e6

FS
type: SiteQuality
SIO_000300: 2.984e0

MQ
type: SiteQuality
SIO_000300: 5.26e1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 3.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

DP
type: SiteQuality
SIO_000300: 1.967023e6

MQRankSum
type: SiteQuality
SIO_000300: -8.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.606e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.429e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.011e0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6441
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.931993817619784e-4
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.735e-1

FS
type: SiteQuality
SIO_000300: 3.816e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
SIO_000300: 1.259e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.965959e6

GenotypeQuality
all individuals: 3282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 6439
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.66183574879227e-5
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.345e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

DP
type: SiteQuality
SIO_000300: 1.965764e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

GenotypeQuality
all individuals: 10120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

QD
type: SiteQuality
SIO_000300: 1.135e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

DP
type: SiteQuality
SIO_000300: 1.964576e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 2.634e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.478e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.964172e6

QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 281
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GenotypeQuality
all individuals: 6440
bin: 9.75e1
variant carriers: 28

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.562228779725742e-3
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201995312218282e-4
allele num: 66556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.226e1

DP
type: SiteQuality
SIO_000300: 1.964674e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.162e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.735809755250825e-4
allele num: 11522
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.162e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

DP
type: SiteQuality
SIO_000300: 1.964674e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

FS
type: SiteQuality
SIO_000300: 1.435e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.961473e6

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

QD
type: SiteQuality
SIO_000300: 1.488e1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.605071205279611e-4
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006433768264085e-5
allele num: 66524
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

FS
type: SiteQuality
SIO_000300: 1.435e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

QD
type: SiteQuality
SIO_000300: 1.488e1

DP
type: SiteQuality
SIO_000300: 1.961473e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.877471888328809e-4
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.645e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

DP
type: SiteQuality
SIO_000300: 1.959193e6

FS
type: SiteQuality
SIO_000300: 5.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3934
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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BaseQRankSum
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SIO_000300: 1.91e-1

GenotypeDepth
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bin: 9.75e1
variant carriers: 0