7-128585996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128585996
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128585996
    reference: chr 7
allele count: 2
allele frequency: 1.652073352056831e-5
allele num: 121060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.373G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.293G>A
  hgvsp: ENSP00000418534.1:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.293G>A
  hgvsp: ENSP00000417770.1:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.293G>A
  hgvsp: ENSP00000349770.5:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419056
  ensembl transcript: ENST00000464557
  gene symbol: IRF5
  hgvsc: ENST00000464557.1:c.293G>A
  hgvsp: ENSP00000419056.1:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.293G>A
  hgvsp: ENSP00000419149.1:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.293G>A
  hgvsp: ENSP00000249375.4:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.293G>A
  hgvsp: ENSP00000385352.2:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.293G>A
  hgvsp: ENSP00000418037.1:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*54G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.293G>A
  hgvsp: ENSP00000419950.1:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.417G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg98Gln
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

7-128585998-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128585998
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128585998
    reference: chr 7
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.295G>A
  hgvsp: ENSP00000417770.1:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419056
  ensembl transcript: ENST00000464557
  gene symbol: IRF5
  hgvsc: ENST00000464557.1:c.295G>A
  hgvsp: ENSP00000419056.1:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.295G>A
  hgvsp: ENSP00000419149.1:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.295G>A
  hgvsp: ENSP00000349770.5:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.295G>A
  hgvsp: ENSP00000249375.4:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.375G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.295G>A
  hgvsp: ENSP00000418037.1:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.295G>A
  hgvsp: ENSP00000385352.2:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*56G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.419G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.295G>A
  hgvsp: ENSP00000419950.1:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.295G>A
  hgvsp: ENSP00000418534.1:p.Asp99Asn
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp99Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

7-128586005-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586005
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586005
    reference: chr 7
allele count: 2
allele frequency: 1.651909607506277e-5
allele num: 121072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.302G>A
  hgvsp: ENSP00000419149.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.302G>A
  hgvsp: ENSP00000249375.4:p.Arg101His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.302G>A
  hgvsp: ENSP00000418037.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.302G>A
  hgvsp: ENSP00000418534.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.302G>A
  hgvsp: ENSP00000419950.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419056
  ensembl transcript: ENST00000464557
  gene symbol: IRF5
  hgvsc: ENST00000464557.1:c.302G>A
  hgvsp: ENSP00000419056.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.302G>A
  hgvsp: ENSP00000349770.5:p.Arg101His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.302G>A
  hgvsp: ENSP00000385352.2:p.Arg101His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.302G>A
  hgvsp: ENSP00000417770.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*63G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.382G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.426G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg101His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

7-128586006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586006
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586006
    reference: chr 7
allele count: 5
allele frequency: 4.129432946267818e-5
allele num: 121082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.383C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.303C>T
  hgvsp: ENST00000357234.5:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.303C>T
  hgvsp: ENST00000479582.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.303C>T
  hgvsp: ENST00000465603.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419056
  ensembl transcript: ENST00000464557
  gene symbol: IRF5
  hgvsc: ENST00000464557.1:c.303C>T
  hgvsp: ENST00000464557.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.303C>T
  hgvsp: ENST00000249375.4:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.303C>T
  hgvsp: ENST00000477535.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.303C>T
  hgvsp: ENST00000402030.2:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.303C>T
  hgvsp: ENST00000489702.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.427C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.303C>T
  hgvsp: ENST00000473745.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20771
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg101Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

7-128586010-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586010
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586010
    reference: chr 7
allele count: 10
allele frequency: 8.260366760284156e-5
allele num: 121060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.307A>G
  hgvsp: ENSP00000385352.2:p.Ile103Val
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.307A>G
  hgvsp: ENSP00000418037.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.307A>G
  hgvsp: ENSP00000419950.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.307A>G
  hgvsp: ENSP00000419149.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.307A>G
  hgvsp: ENSP00000349770.5:p.Ile103Val
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.307A>G
  hgvsp: ENSP00000418534.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.387A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*68A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419056
  ensembl transcript: ENST00000464557
  gene symbol: IRF5
  hgvsc: ENST00000464557.1:c.307A>G
  hgvsp: ENSP00000419056.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.307A>G
  hgvsp: ENSP00000249375.4:p.Ile103Val
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.431A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.307A>G
  hgvsp: ENSP00000417770.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile103Val
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

7-128586015-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586015
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586015
    reference: chr 7
allele count: 2
allele frequency: 1.652455548945733e-5
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.312C>T
  hgvsp: ENST00000489702.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.312C>T
  hgvsp: ENST00000357234.5:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.312C>T
  hgvsp: ENST00000465603.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.312C>T
  hgvsp: ENST00000473745.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419056
  ensembl transcript: ENST00000464557
  gene symbol: IRF5
  hgvsc: ENST00000464557.1:c.312C>T
  hgvsp: ENST00000464557.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.312C>T
  hgvsp: ENST00000479582.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.436C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.312C>T
  hgvsp: ENST00000402030.2:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*73C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.312C>T
  hgvsp: ENST00000249375.4:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.312C>T
  hgvsp: ENST00000477535.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.392C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr104Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

7-128586016-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586016
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586016
    reference: chr 7
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419056
  ensembl transcript: ENST00000464557
  gene symbol: IRF5
  hgvsc: ENST00000464557.1:c.313G>C
  hgvsp: ENSP00000419056.1:p.Asp105His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.313G>C
  hgvsp: ENSP00000419950.1:p.Asp105His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.313G>C
  hgvsp: ENSP00000349770.5:p.Asp105His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.313G>C
  hgvsp: ENSP00000419149.1:p.Asp105His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.313G>C
  hgvsp: ENSP00000385352.2:p.Asp105His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.393G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.313G>C
  hgvsp: ENSP00000418534.1:p.Asp105His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*74G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.437G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.313G>C
  hgvsp: ENSP00000418037.1:p.Asp105His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.313G>C
  hgvsp: ENSP00000249375.4:p.Asp105His
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.313G>C
  hgvsp: ENSP00000417770.1:p.Asp105His
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp105His
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

7-128586018-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586018
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586018
    reference: chr 7
allele count: 3
allele frequency: 2.479011039862498e-5
allele num: 121016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.315C>T
  hgvsp: ENST00000473745.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.315C>T
  hgvsp: ENST00000357234.5:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.439C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.315C>T
  hgvsp: ENST00000249375.4:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.395C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419056
  ensembl transcript: ENST00000464557
  gene symbol: IRF5
  hgvsc: ENST00000464557.1:c.315C>T
  hgvsp: ENST00000464557.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.315C>T
  hgvsp: ENST00000477535.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.315C>T
  hgvsp: ENST00000479582.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.315C>T
  hgvsp: ENST00000489702.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.315C>T
  hgvsp: ENST00000402030.2:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.315C>T
  hgvsp: ENST00000465603.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*76C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp105Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

7-128586021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586021
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586021
    reference: chr 7
allele count: 3
allele frequency: 2.478970070568015e-5
allele num: 121018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.318G>A
  hgvsp: ENST00000473745.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419056
  ensembl transcript: ENST00000464557
  gene symbol: IRF5
  hgvsc: ENST00000464557.1:c.318G>A
  hgvsp: ENST00000464557.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.318G>A
  hgvsp: ENST00000477535.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.442G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.318G>A
  hgvsp: ENST00000357234.5:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.318G>A
  hgvsp: ENST00000479582.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.318G>A
  hgvsp: ENST00000489702.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.398G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.318G>A
  hgvsp: ENST00000465603.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.318G>A
  hgvsp: ENST00000402030.2:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.318G>A
  hgvsp: ENST00000249375.4:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly106Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

7-128586025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586025
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586025
    reference: chr 7
allele count: 2
allele frequency: 1.652837922713299e-5
allele num: 121004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*83C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.322C>T
  hgvsp: ENSP00000385352.2:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.322C>T
  hgvsp: ENSP00000419149.1:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.322C>T
  hgvsp: ENSP00000417770.1:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.322C>T
  hgvsp: ENSP00000418534.1:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.322C>T
  hgvsp: ENSP00000418037.1:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.322C>T
  hgvsp: ENSP00000419950.1:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.322C>T
  hgvsp: ENSP00000249375.4:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.402C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.446C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.322C>T
  hgvsp: ENSP00000349770.5:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg108Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

7-128586026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586026
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586026
    reference: chr 7
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.323G>A
  hgvsp: ENSP00000419950.1:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.323G>A
  hgvsp: ENSP00000419149.1:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*84G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.323G>A
  hgvsp: ENSP00000385352.2:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.323G>A
  hgvsp: ENSP00000418037.1:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.447G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.323G>A
  hgvsp: ENSP00000418534.1:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.323G>A
  hgvsp: ENSP00000349770.5:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.323G>A
  hgvsp: ENSP00000249375.4:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.403G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.323G>A
  hgvsp: ENSP00000417770.1:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg108Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-128586032-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586032
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586032
    reference: chr 7
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.329T>G
  hgvsp: ENSP00000418037.1:p.Met110Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.329T>G
  hgvsp: ENSP00000419950.1:p.Met110Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*90T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.329T>G
  hgvsp: ENSP00000417770.1:p.Met110Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.329T>G
  hgvsp: ENSP00000385352.2:p.Met110Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.329T>G
  hgvsp: ENSP00000249375.4:p.Met110Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.453T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.329T>G
  hgvsp: ENSP00000349770.5:p.Met110Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.329T>G
  hgvsp: ENSP00000419149.1:p.Met110Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.329T>G
  hgvsp: ENSP00000418534.1:p.Met110Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.409T>G
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met110Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

7-128586044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586044
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586044
    reference: chr 7
allele count: 3
allele frequency: 2.485377694563651e-5
allele num: 120706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.341C>T
  hgvsp: ENSP00000419149.1:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.341C>T
  hgvsp: ENSP00000349770.5:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*102C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.341C>T
  hgvsp: ENSP00000418534.1:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.341C>T
  hgvsp: ENSP00000385352.2:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.341C>T
  hgvsp: ENSP00000419950.1:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.421C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.341C>T
  hgvsp: ENSP00000249375.4:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.341C>T
  hgvsp: ENSP00000417770.1:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.341C>T
  hgvsp: ENSP00000418037.1:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.465C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro114Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-128586048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586048
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586048
    reference: chr 7
allele count: 1
allele frequency: 8.297102651754007e-6
allele num: 120524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.345C>T
  hgvsp: ENST00000479582.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.345C>T
  hgvsp: ENST00000465603.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.345C>T
  hgvsp: ENST00000402030.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.345C>T
  hgvsp: ENST00000489702.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.425C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.345C>T
  hgvsp: ENST00000473745.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.345C>T
  hgvsp: ENST00000477535.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.345C>T
  hgvsp: ENST00000249375.4:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.345C>T
  hgvsp: ENST00000357234.5:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*106C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.469C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr115Tyr
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

7-128586057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586057
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586057
    reference: chr 7
allele count: 122
allele frequency: 1.017039581179766e-3
allele num: 119956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.478C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.354C>T
  hgvsp: ENST00000249375.4:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.354C>T
  hgvsp: ENST00000477535.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.354C>T
  hgvsp: ENST00000489702.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*115C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.354C>T
  hgvsp: ENST00000465603.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.354C>T
  hgvsp: ENST00000479582.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.354C>T
  hgvsp: ENST00000357234.5:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.434C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.354C>T
  hgvsp: ENST00000402030.2:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.354C>T
  hgvsp: ENST00000473745.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33095
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 20480
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
hgvs: p.Tyr118Tyr
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

7-128586068-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586068
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586068
    reference: chr 7
allele count: 1
allele frequency: 8.411985396793351e-6
allele num: 118878
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.365C>G
  hgvsp: ENSP00000349770.5:p.Ser122Cys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.481+8C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.365C>G
  hgvsp: ENSP00000417770.1:p.Ser122Cys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.365C>G
  hgvsp: ENSP00000249375.4:p.Ser122Cys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*126C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.445C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.365C>G
  hgvsp: ENSP00000385352.2:p.Ser122Cys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.365C>G
  hgvsp: ENSP00000418037.1:p.Ser122Cys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.365C>G
  hgvsp: ENSP00000419149.1:p.Ser122Cys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.365C>G
  hgvsp: ENSP00000419950.1:p.Ser122Cys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.357+8C>G
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser122Cys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

7-128586069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586069
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586069
    reference: chr 7
allele count: 4
allele frequency: 3.37251066556498e-5
allele num: 118606
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.366C>T
  hgvsp: ENST00000357234.5:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.366C>T
  hgvsp: ENST00000479582.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.366C>T
  hgvsp: ENST00000249375.4:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*127C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.366C>T
  hgvsp: ENST00000473745.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.366C>T
  hgvsp: ENST00000489702.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.481+9C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.357+9C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.446C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.366C>T
  hgvsp: ENST00000402030.2:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.366C>T
  hgvsp: ENST00000477535.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser122Ser
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

7-128586071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586071
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586071
    reference: chr 7
allele count: 1
allele frequency: 8.444376889429329e-6
allele num: 118422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.368A>G
  hgvsp: ENSP00000418037.1:p.Asn123Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.368A>G
  hgvsp: ENSP00000419950.1:p.Asn123Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.368A>G
  hgvsp: ENSP00000349770.5:p.Asn123Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.368A>G
  hgvsp: ENSP00000419149.1:p.Asn123Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.448A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.368A>G
  hgvsp: ENSP00000385352.2:p.Asn123Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*129A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.368A>G
  hgvsp: ENSP00000249375.4:p.Asn123Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.368A>G
  hgvsp: ENSP00000417770.1:p.Asn123Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.357+11A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.481+11A>G
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn123Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

7-128586094-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586094
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586094
    reference: chr 7
allele count: 26
allele frequency: 2.296414061119943e-4
allele num: 113220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.357+34A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.481+34A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.385+6A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.385+6A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*146+6A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.385+6A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.385+6A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.385+6A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.465+6A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.385+6A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.385+6A>G
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26795
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16626
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.385+6A>G
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

7-128586103-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586103
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586103
    reference: chr 7
allele count: 2031
allele frequency: 1.856829402084476e-2
allele num: 109380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.465+15C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.357+43C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.385+15C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.385+15C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.385+15C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.385+15C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.385+15C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.481+43C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*146+15C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.385+15C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.385+15C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12149
  bin: 1.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 3.25e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 1.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 13884
  bin: 2.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 20789
  bin: 2.25e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 30230
  bin: 6.25e1
  variant carriers: 15
num of homozygotes: 193
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

7-128586104-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586104
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586104
    reference: chr 7
allele count: 1
allele frequency: 9.164726799494107e-6
allele num: 109114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.385+16C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.385+16C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.481+44C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.357+44C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.385+16C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.385+16C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*146+16C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.465+16C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.385+16C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.385+16C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.385+16C>G
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14203
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

7-128586108-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586108
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586108
    reference: chr 7
allele count: 1
allele frequency: 9.246075041145035e-6
allele num: 108154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.385+20G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.385+20G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.385+20G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.385+20G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.385+20G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.465+20G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.481+48G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.385+20G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*146+20G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.357+48G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.385+20G>C
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13488
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-128586508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586508
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586508
    reference: chr 7
allele count: 2
allele frequency: 4.672460517708625e-5
allele num: 42804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.358-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.386-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.482-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.386-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*147-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.386-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.386-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.386-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.386-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.386-47C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.466-47C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11714
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26962
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

7-128586509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586509
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586509
    reference: chr 7
allele count: 3
allele frequency: 6.972204146137399e-5
allele num: 43028
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.386-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.386-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.466-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.386-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.386-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*147-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.386-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.386-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.482-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.386-46G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.358-46G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27196
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5853
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

7-128586513-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586513
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586513
    reference: chr 7
allele count: 1
allele frequency: 2.283000776220264e-5
allele num: 43802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*147-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.386-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.386-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.386-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.386-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.386-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.482-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.386-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.358-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.386-42T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.466-42T>C
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28108
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

7-128586532-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586532
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586532
    reference: chr 7
allele count: 2
allele frequency: 4.113195129976966e-5
allele num: 48624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.386-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.386-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*147-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.386-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.482-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.358-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.386-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.386-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.386-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.386-23G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.466-23G>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/7-128586544-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586544
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586544
    reference: chr 7
allele count: 3
allele frequency: 5.462689828471539e-5
allele num: 54918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.386-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.386-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.386-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.386-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.386-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.466-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.386-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.386-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.358-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.482-11C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*147-11C>A
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30070
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-128586550-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586550
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586550
    reference: chr 7
allele count: 2
allele frequency: 3.377693710734311e-5
allele num: 59212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.386-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.386-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.358-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.386-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.386-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.386-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.466-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.386-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*147-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.386-5T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.482-5T>G
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14212
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.386-5T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

7-128586552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586552
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586552
    reference: chr 7
allele count: 1
allele frequency: 1.658814942605003e-5
allele num: 60284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*147-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.386-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.358-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.386-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.386-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.386-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.466-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.386-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.482-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.386-3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.386-3C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.386-3C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/7-128586563-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586563
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586563
    reference: chr 7
allele count: 1
allele frequency: 1.491913827057349e-5
allele num: 67028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*155C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.474C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.394C>A
  hgvsp: ENSP00000385352.2:p.Pro132Thr
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.394C>A
  hgvsp: ENSP00000417770.1:p.Pro132Thr
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.394C>A
  hgvsp: ENSP00000419149.1:p.Pro132Thr
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.394C>A
  hgvsp: ENSP00000249375.4:p.Pro132Thr
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.394C>A
  hgvsp: ENSP00000349770.5:p.Pro132Thr
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.394C>A
  hgvsp: ENSP00000418037.1:p.Pro132Thr
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.394C>A
  hgvsp: ENSP00000419950.1:p.Pro132Thr
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.490C>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.366C>A
  hgvsp: ENSP00000418534.1:p.Ser122Arg
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17658
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro132Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

7-128586563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586563
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586563
    reference: chr 7
allele count: 1
allele frequency: 1.491913827057349e-5
allele num: 67028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*155C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.394C>T
  hgvsp: ENSP00000417770.1:p.Pro132Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.394C>T
  hgvsp: ENSP00000418037.1:p.Pro132Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.394C>T
  hgvsp: ENSP00000419149.1:p.Pro132Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.366C>T
  hgvsp: ENST00000465603.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.394C>T
  hgvsp: ENSP00000349770.5:p.Pro132Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.394C>T
  hgvsp: ENSP00000385352.2:p.Pro132Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.490C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.474C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.394C>T
  hgvsp: ENSP00000249375.4:p.Pro132Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.394C>T
  hgvsp: ENSP00000419950.1:p.Pro132Ser
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro132Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

7-128586566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586566
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586566
    reference: chr 7
allele count: 1
allele frequency: 1.457046275789719e-5
allele num: 68632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.397C>T
  hgvsp: ENSP00000417770.1:p.Pro133Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.397C>T
  hgvsp: ENSP00000418037.1:p.Pro133Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.397C>T
  hgvsp: ENSP00000249375.4:p.Pro133Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.369C>T
  hgvsp: ENST00000465603.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.397C>T
  hgvsp: ENSP00000419149.1:p.Pro133Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.477C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.493C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.397C>T
  hgvsp: ENSP00000419950.1:p.Pro133Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.397C>T
  hgvsp: ENSP00000349770.5:p.Pro133Ser
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*158C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.397C>T
  hgvsp: ENSP00000385352.2:p.Pro133Ser
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro133Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

7-128586586-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586586
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586586
    reference: chr 7
allele count: 1
allele frequency: 1.391052748720232e-5
allele num: 71888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.497T>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.417T>A
  hgvsp: ENST00000402030.2:c.417T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.417T>A
  hgvsp: ENST00000489702.1:c.417T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*178T>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.417T>A
  hgvsp: ENST00000249375.4:c.417T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.417T>A
  hgvsp: ENST00000479582.1:c.417T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.417T>A
  hgvsp: ENST00000473745.1:c.417T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.417T>A
  hgvsp: ENST00000477535.1:c.417T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.389T>A
  hgvsp: ENSP00000418534.1:p.Val130Glu
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.513T>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.417T>A
  hgvsp: ENST00000357234.5:c.417T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val130Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

7-128586590-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586590
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586590
    reference: chr 7
allele count: 3
allele frequency: 4.209462872537464e-5
allele num: 71268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.421G>A
  hgvsp: ENSP00000418037.1:p.Gly141Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.421G>A
  hgvsp: ENSP00000349770.5:p.Gly141Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.517G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.421G>A
  hgvsp: ENSP00000419950.1:p.Gly141Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.421G>A
  hgvsp: ENSP00000249375.4:p.Gly141Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  hgvsc: ENST00000479582.1:c.421G>A
  hgvsp: ENSP00000417770.1:p.Gly141Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.501G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*182G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.393G>A
  hgvsp: ENST00000465603.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.421G>A
  hgvsp: ENSP00000419149.1:p.Gly141Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.421G>A
  hgvsp: ENSP00000385352.2:p.Gly141Arg
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16598
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly141Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

7-128586592-AGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586592
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586589
    reference: chr 7
allele count: 1
allele frequency: 1.398562277978238e-5
allele num: 71502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.432_434delGGA
  hgvsp: ENSP00000419950.1:p.Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.432_434delGGA
  hgvsp: ENSP00000385352.2:p.Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.404_406delGGA
  hgvsp: ENSP00000418534.1:p.Arg135del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.432_434delGGA
  hgvsp: ENSP00000419149.1:p.Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*193_*195delGGA
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000417770
  ensembl transcript: ENST00000479582
  gene symbol: IRF5
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.432_434delGGA
  hgvsp: ENSP00000249375.4:p.Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.432_434delGGA
  hgvsp: ENSP00000418037.1:p.Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.528_530delGGA
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.512_514delGGA
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.432_434delGGA
  hgvsp: ENSP00000349770.5:p.Glu149del
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu149del
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: AGAG
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

7-128586597-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586597
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586597
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 70184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.428A>G
  hgvsp: ENSP00000419950.1:p.Glu143Gly
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.400A>G
  hgvsp: ENSP00000418534.1:p.Arg134Gly
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*189A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.428A>G
  hgvsp: ENSP00000419149.1:p.Glu143Gly
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.428A>G
  hgvsp: ENSP00000418037.1:p.Glu143Gly
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.428A>G
  hgvsp: ENSP00000249375.4:p.Glu143Gly
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.524A>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.428A>G
  hgvsp: ENSP00000385352.2:p.Glu143Gly
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.428A>G
  hgvsp: ENSP00000349770.5:p.Glu143Gly
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.508A>G
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23953
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu143Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

7-128586598-GGAGGAAGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586598
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586589
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 70192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.438_446delAGAGGAAGA
  hgvsp: ENSP00000418037.1:p.Glu147_Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.438_446delAGAGGAAGA
  hgvsp: ENSP00000385352.2:p.Glu147_Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.534_542delAGAGGAAGA
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.438_446delAGAGGAAGA
  hgvsp: ENSP00000419950.1:p.Glu147_Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.438_446delAGAGGAAGA
  hgvsp: ENSP00000419149.1:p.Glu147_Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.438_446delAGAGGAAGA
  hgvsp: ENSP00000249375.4:p.Glu147_Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.410_418delAGAGGAAGA
  hgvsp: ENSP00000418534.1:p.Lys137_Lys139del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.438_446delAGAGGAAGA
  hgvsp: ENSP00000349770.5:p.Glu147_Glu149del
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.518_526delAGAGGAAGA
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23914
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu147_Glu149del
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: GGAGGAAGAA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

7-128586599-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586599
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586599
    reference: chr 7
allele count: 1
allele frequency: 1.45734355416946e-5
allele num: 68618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000420274
  ensembl transcript: ENST00000473787
  gene symbol: IRF5
  hgvsc: ENST00000473787.1:c.*191G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.402G>A
  hgvsp: ENST00000465603.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.526G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.430G>A
  hgvsp: ENSP00000349770.5:p.Glu144Lys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.430G>A
  hgvsp: ENSP00000418037.1:p.Glu144Lys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.430G>A
  hgvsp: ENSP00000385352.2:p.Glu144Lys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.430G>A
  hgvsp: ENSP00000249375.4:p.Glu144Lys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.510G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.430G>A
  hgvsp: ENSP00000419149.1:p.Glu144Lys
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.430G>A
  hgvsp: ENSP00000419950.1:p.Glu144Lys
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu144Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

7-128586616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586616
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586616
    reference: chr 7
allele count: 114
allele frequency: 1.751528746581446e-3
allele num: 65086
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447G>A
  hgvsp: ENST00000357234.5:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447G>A
  hgvsp: ENST00000402030.2:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447G>A
  hgvsp: ENST00000249375.4:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447G>A
  hgvsp: ENST00000477535.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.447G>A
  hgvsp: ENST00000489702.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.543G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419G>A
  hgvsp: ENSP00000418534.1:p.Ser140Asn
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447G>A
  hgvsp: ENST00000473745.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24870
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 12731
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 2.75e1
  variant carriers: 2
hgvs: p.Ser140Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

7-128586621-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586621
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586621
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 64334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.548G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+5G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+5G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.452G>T
  hgvsp: ENSP00000418037.1:p.Ser151Ile
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+5G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+5G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+5G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+5G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+5G>T
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25004
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3442
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser151Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

7-128586623-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586623
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586623
    reference: chr 7
allele count: 2
allele frequency: 3.154574132492114e-5
allele num: 63400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+7G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+7G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+7G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418037
  ensembl transcript: ENST00000489702
  gene symbol: IRF5
  hgvsc: ENST00000489702.1:c.454G>A
  hgvsp: ENST00000489702.1:c.454G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+7G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.550G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+7G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+7G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+7G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13776
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
hgvs: c.447+7G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

7-128586626-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586626
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586626
    reference: chr 7
allele count: 1
allele frequency: 1.611136173229361e-5
allele num: 62068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.553G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+10G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+10G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+10G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+10G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+10G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+10G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+10G>T
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

7-128586630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586630
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586630
    reference: chr 7
allele count: 2
allele frequency: 3.313672211544834e-5
allele num: 60356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.557G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+14G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+14G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+14G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+14G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+14G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+14G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+14G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15028
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24845
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

7-128586653-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586653
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586653
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 48180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+37C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+37C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.580C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+37C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+37C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+37C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+37C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+37C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24850
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3741
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

7-128586654-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586654
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586654
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 47580
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+38G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+38G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+38G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.581G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+38G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+38G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+38G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+38G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25022
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3982
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11729
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS

7-128586654-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586654
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586654
    reference: chr 7
allele count: 1
allele frequency: 2.101723413198823e-5
allele num: 47580
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+38G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.581G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+38G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+38G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+38G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+38G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+38G>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+38G>C
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3982
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

7-128586660-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586660
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586661
    reference: chr 7
allele count: 1
allele frequency: 2.214447052570973e-5
allele num: 45158
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+45dupC
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+45dupC
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.588dupC
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+45dupC
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+45dupC
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+45dupC
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+45dupC
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+45dupC
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11641
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12683
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

7-128586662-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586662
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586662
    reference: chr 7
allele count: 1
allele frequency: 2.248808131690204e-5
allele num: 44468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+46T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.589T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+46T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+46T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+46T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+46T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+46T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+46T>C
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11339
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

7-128586670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586670
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586670
    reference: chr 7
allele count: 1
allele frequency: 2.47133254250692e-5
allele num: 40464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.597C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+54C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+54C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+54C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+54C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+54C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+54C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+54C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9714
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12782
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8324
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6650
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

7-128586671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586671
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586671
    reference: chr 7
allele count: 1
allele frequency: 2.495383540450167e-5
allele num: 40074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+55C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.598C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+55C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+55C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+55C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+55C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+55C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+55C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 27499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2685
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9024
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12656
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

7-128586674-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586674
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586674
    reference: chr 7
allele count: 3
allele frequency: 7.640976007335337e-5
allele num: 39262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+58C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+58C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+58C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+58C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.601C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+58C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+58C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+58C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27529
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9645
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

7-128586674-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128586674
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128586674
    reference: chr 7
allele count: 1
allele frequency: 2.546992002445112e-5
allele num: 39262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.447+58C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.447+58C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.447+58C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.447+58C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000488569
  gene symbol: IRF5
  hgvsc: ENST00000488569.1:n.601C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.527+58C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.447+58C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.419+58C>G
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9645
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10593
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

7-128587035-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587035
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587035
    reference: chr 7
allele count: 905
allele frequency: 7.462194297399363e-3
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.448-42C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.528-42C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.448-42C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.420-42C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.448-42C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.448-42C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.448-42C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8247
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 4.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 5.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 6.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 8902
  bin: 3.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 5.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 8358
  bin: 4.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 6.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 2
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-128587036-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587036
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587036
    reference: chr 7
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.448-41T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.448-41T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.448-41T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.420-41T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.528-41T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.448-41T>C
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.448-41T>C
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29540
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

7-128587046-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587046
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587046
    reference: chr 7
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.528-31C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.448-31C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.420-31C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.448-31C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.448-31C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.448-31C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.448-31C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

7-128587049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587049
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587049
    reference: chr 7
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.528-28C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.448-28C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.448-28C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.448-28C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.448-28C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.448-28C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.420-28C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3873
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29538
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

7-128587061-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587061
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587061
    reference: chr 7
allele count: 3
allele frequency: 2.472595400972554e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.448-16G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.448-16G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.528-16G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.448-16G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.448-16G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.420-16G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.448-16G>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

7-128587067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587067
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587067
    reference: chr 7
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.448-10G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.448-10G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.448-10G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.448-10G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.528-10G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.448-10G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.420-10G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

7-128587078-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587078
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587078
    reference: chr 7
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.449T>G
  hgvsp: ENSP00000249375.4:p.Leu150Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.449T>G
  hgvsp: ENSP00000349770.5:p.Leu150Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.449T>G
  hgvsp: ENSP00000385352.2:p.Leu150Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.449T>G
  hgvsp: ENSP00000419149.1:p.Leu150Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.529T>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.421T>G
  hgvsp: ENSP00000418534.1:p.Cys141Gly
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.449T>G
  hgvsp: ENSP00000419950.1:p.Leu150Arg
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu150Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

7-128587088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587088
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587088
    reference: chr 7
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.459G>A
  hgvsp: ENSP00000249375.4:p.Met153Ile
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.459G>A
  hgvsp: ENSP00000419149.1:p.Met153Ile
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.431G>A
  hgvsp: ENSP00000418534.1:p.Cys144Tyr
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.539G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.459G>A
  hgvsp: ENSP00000349770.5:p.Met153Ile
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.459G>A
  hgvsp: ENSP00000419950.1:p.Met153Ile
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.459G>A
  hgvsp: ENSP00000385352.2:p.Met153Ile
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met153Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-128587098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587098
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587098
    reference: chr 7
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.549C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.469C>T
  hgvsp: ENST00000357234.5:c.469C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.441C>T
  hgvsp: ENST00000465603.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.469C>T
  hgvsp: ENST00000473745.1:c.469C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.469C>T
  hgvsp: ENST00000249375.4:c.469C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.469C>T
  hgvsp: ENST00000402030.2:c.469C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.469C>T
  hgvsp: ENST00000477535.1:c.469C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4945
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu157Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

7-128587103-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587103
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587103
    reference: chr 7
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.*2C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.474C>G
  hgvsp: ENSP00000419149.1:p.Ser158Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.554C>G
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.474C>G
  hgvsp: ENSP00000385352.2:p.Ser158Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.474C>G
  hgvsp: ENSP00000349770.5:p.Ser158Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.474C>G
  hgvsp: ENSP00000249375.4:p.Ser158Arg
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.474C>G
  hgvsp: ENSP00000419950.1:p.Ser158Arg
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29531
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9704
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser158Arg
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

7-128587104-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587104
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587104
    reference: chr 7
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.475C>T
  hgvsp: ENSP00000419950.1:p.Leu159Phe
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.475C>T
  hgvsp: ENSP00000385352.2:p.Leu159Phe
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.475C>T
  hgvsp: ENSP00000349770.5:p.Leu159Phe
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.475C>T
  hgvsp: ENSP00000249375.4:p.Leu159Phe
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.555C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.475C>T
  hgvsp: ENSP00000419149.1:p.Leu159Phe
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29530
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4943
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu159Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

7-128587108-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587108
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587108
    reference: chr 7
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.559C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.479C>T
  hgvsp: ENSP00000419950.1:p.Thr160Ile
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.479C>T
  hgvsp: ENSP00000249375.4:p.Thr160Ile
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.479C>T
  hgvsp: ENSP00000349770.5:p.Thr160Ile
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.479C>T
  hgvsp: ENSP00000385352.2:p.Thr160Ile
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.479C>T
  hgvsp: ENSP00000419149.1:p.Thr160Ile
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr160Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

7-128587114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587114
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587114
    reference: chr 7
allele count: 3
allele frequency: 2.47255464345762e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.481+4G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.565G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.481+4G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.481+4G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.481+4G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.*9+4G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.481+4G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9626
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: c.481+4G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

7-128587118-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587118
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587118
    reference: chr 7
allele count: 16
allele frequency: 1.318761024017935e-4
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.569C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.*9+8C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.481+8C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.481+8C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.481+8C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.481+8C>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.481+8C>T
  variant of: http://identifiers.org/hgnc/6120
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
hgvs: c.481+8C>T
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

7-128587119-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587119
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587119
    reference: chr 7
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.481+9G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.481+9G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.481+9G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.*9+9G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.570G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.481+9G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.481+9G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29523
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

7-128587119-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587119
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587119
    reference: chr 7
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.481+9G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.481+9G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.570G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.*9+9G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.481+9G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.481+9G>T
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.481+9G>T
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29523
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

7-128587137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128587137
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 128587137
    reference: chr 7
allele count: 2
allele frequency: 1.649266900862567e-5
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000249375
  ensembl transcript: ENST00000249375
  gene symbol: IRF5
  hgvsc: ENST00000249375.4:c.481+27G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419149
  ensembl transcript: ENST00000473745
  gene symbol: IRF5
  hgvsc: ENST00000473745.1:c.481+27G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000385352
  ensembl transcript: ENST00000402030
  gene symbol: IRF5
  hgvsc: ENST00000402030.2:c.481+27G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128604
  ensembl transcript: ENST00000461416
  gene symbol: IRF5
  hgvsc: ENST00000461416.1:n.588G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000349770
  ensembl transcript: ENST00000357234
  gene symbol: IRF5
  hgvsc: ENST00000357234.5:c.481+27G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000419950
  ensembl transcript: ENST00000477535
  gene symbol: IRF5
  hgvsc: ENST00000477535.1:c.481+27G>A
  variant of: http://identifiers.org/hgnc/6120
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128604
  ensembl protein: ENSP00000418534
  ensembl transcript: ENST00000465603
  gene symbol: IRF5
  hgvsc: ENST00000465603.1:c.*9+27G>A
  variant of: http://identifiers.org/hgnc/6120
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9479
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29517
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

GenotypeDepth
all individuals: 7
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 645
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 1.4672e1

DP
type: SiteQuality
SIO_000300: 1.493507e6

VQSLOD
type: SiteQuality
SIO_000300: -2.335e0

QD
type: SiteQuality
SIO_000300: 1.042e1

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 34112
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50681
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.398e0

DP
type: SiteQuality
SIO_000300: 1.493171e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.756e1

VQSLOD
type: SiteQuality
SIO_000300: -1.816e0

MQRankSum
type: SiteQuality
SIO_000300: -1.603e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

GenotypeDepth
all individuals: 4256
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34079
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50724
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.317497103128621e-4
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.117e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 1.317e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.494164e6

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5797
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.010337780983292e-5
allele num: 66552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.731e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 1.494092e6

QD
type: SiteQuality
SIO_000300: 1.313e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.458e0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 634
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50723
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 999
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.065752759917505e-4
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

FS
type: SiteQuality
SIO_000300: 2.179e0

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

DP
type: SiteQuality
SIO_000300: 1.494014e6

GenotypeDepth
all individuals: 638
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20817
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50583
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

VQSLOD
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SIO_000300: 3.89e-1

BaseQRankSum
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SIO_000300: 5.77e-1

ClippingRankSum
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SIO_000300: -9.350000000000001e-1

MQ
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SIO_000300: 5.96e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.37e0

MQRankSum
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SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.493674e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 3.0e-4

MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.88e-1

VQSLOD
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BaseQRankSum
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SIO_000300: 1.22e0

ClippingRankSum
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SIO_000300: 6.919999999999999e-1

DP
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SIO_000300: 1.49371e6

ReadPosRankSum
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SIO_000300: 9.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

QD
type: SiteQuality
SIO_000300: 7.62e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 1.931993817619784e-4
allele num: 10352
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ClippingRankSum
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SIO_000300: -5.570000000000001e-1

MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.937e1

BaseQRankSum
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SIO_000300: 5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.092e0

DP
type: SiteQuality
SIO_000300: 1.493904e6

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.595155709342561e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
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FS
type: SiteQuality
SIO_000300: 3.955e0

ReadPosRankSum
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SIO_000300: 1.67e0

VQSLOD
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InbreedingCoeff
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DP
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QD
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SIO_000300: 1.348e1

MQRankSum
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SIO_000300: 1.82e-1

BaseQRankSum
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SIO_000300: -2.333e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
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SIO_000300: -1.685e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.006343384541382e-5
allele num: 66526
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.951e1

QD
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VQSLOD
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SIO_000300: -5.303e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66524
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African
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South Asian
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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MQ
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FS
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 107
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GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.517255917605252e-5
allele num: 66412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.786e0

QD
type: SiteQuality
SIO_000300: 1.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.268e0

DP
type: SiteQuality
SIO_000300: 1.4892e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

FS
type: SiteQuality
SIO_000300: 4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506886471173262e-5
allele num: 66362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -2.207e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

DP
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SIO_000300: 1.486248e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.762e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.83e-1

QD
type: SiteQuality
SIO_000300: 6.39e0

GenotypeDepth
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variant carriers: 12

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 166
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variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.912621359223301e-4
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.292474200855777e-5
allele num: 15892
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.472626472626473e-3
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.529519730804527e-4
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 99
allele frequency: 1.496236737901641e-3
allele num: 66166
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
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SIO_000300: 4.59e0

FS
type: SiteQuality
SIO_000300: 1.194e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

QD
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SIO_000300: 1.186e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 1.480474e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 97
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.621e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 8.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 1.174e0

DP
type: SiteQuality
SIO_000300: 1.45352e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 434
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GenotypeQuality
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GenotypeQuality
all individuals: 231
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 169
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GenotypeQuality
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GenotypeQuality
all individuals: 5316
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GenotypeQuality
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GenotypeQuality
all individuals: 1081
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GenotypeQuality
all individuals: 47996
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.480682213713888e-4
allele num: 11492
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.638e1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -7.759e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

BaseQRankSum
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SIO_000300: -2.105e0

DP
type: SiteQuality
SIO_000300: 1.448695e6

FS
type: SiteQuality
SIO_000300: 6.391e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.79e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65648
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

QD
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SIO_000300: 9.710000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

FS
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SIO_000300: 8.172000000000001e0

ReadPosRankSum
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.107e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.443393e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 766
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.78126113288208e-4
allele num: 11228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577088064597527e-5
allele num: 63408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 23
allele frequency: 1.745598057073467e-3
allele num: 13176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.19e-1

DP
type: SiteQuality
SIO_000300: 1.329891e6

GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1705

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 631
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GenotypeQuality
all individuals: 138
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variant carriers: 6

GenotypeQuality
all individuals: 307
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variant carriers: 20

GenotypeQuality
all individuals: 765
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variant carriers: 11

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 14

African
type: Population
allele count: 1894
allele frequency: 1.965953913223998e-1
allele num: 9634
num of homozygotes: 192

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 38
allele frequency: 6.155640510594182e-4
allele num: 61732
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.497918401332223e-4
allele num: 12010
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 6.25e-3
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 91
allele frequency: 8.310502283105023e-3
allele num: 10950
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 1.243633e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.391e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.427e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.47e0

QD
type: SiteQuality
SIO_000300: 1.582e1

GenotypeQuality
all individuals: 388
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31320
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620220349967596e-5
allele num: 61720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.914e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 8.023e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.574e0

QD
type: SiteQuality
SIO_000300: 2.177e1

DP
type: SiteQuality
SIO_000300: 1.221455e6

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.5e0
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GenotypeQuality
all individuals: 1686
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
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variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3785
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
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GenotypeQuality
all individuals: 765
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.630576571875815e-5
allele num: 61328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11730
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.627e0

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.188039e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

GenotypeQuality
all individuals: 588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3679
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8029
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5298
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7260
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.029220779220779e-4
allele num: 4928
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.089799476896251e-4
allele num: 9176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1176
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 1.706e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.435e1

DP
type: SiteQuality
SIO_000300: 7.10736e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeQuality
all individuals: 973
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4967
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8098
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3530
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22258
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.254502061184639e-4
allele num: 9218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

QD
type: SiteQuality
SIO_000300: 1.53e1

DP
type: SiteQuality
SIO_000300: 7.16914e5

GenotypeQuality
all individuals: 1480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3951
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variant carriers: 0

GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
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GenotypeQuality
all individuals: 4699
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7836
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 303
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variant carriers: 0

GenotypeQuality
all individuals: 441
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variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.075962986873252e-4
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1224
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.68e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 7.32573e5

GenotypeQuality
all individuals: 1172
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 7.5e0
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GenotypeQuality
all individuals: 2042
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.25e1
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GenotypeQuality
all individuals: 659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
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GenotypeQuality
all individuals: 1144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30020
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5408
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 9.643201542912247e-4
allele num: 2074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

QD
type: SiteQuality
SIO_000300: 6.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 2.031e0

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.776e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.192e0

DP
type: SiteQuality
SIO_000300: 8.22217e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 2042
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GenotypeQuality
all individuals: 309
bin: 9.25e1
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GenotypeQuality
all individuals: 248
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GenotypeQuality
all individuals: 685
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variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.725401842760106e-5
allele num: 29738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2624
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.234137622877569e-4
allele num: 4476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1812
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.011e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

DP
type: SiteQuality
SIO_000300: 8.94179e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

QD
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
type: SiteQuality
SIO_000300: -1.15e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

GenotypeDepth
all individuals: 175
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 505
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variant carriers: 0

GenotypeQuality
all individuals: 829
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variant carriers: 0

GenotypeQuality
all individuals: 2088
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variant carriers: 0

GenotypeQuality
all individuals: 639
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GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2015
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32460
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

Latino
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allele frequency: 6.587615283267457e-4
allele num: 3036
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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QD
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MQRankSum
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: 3.17e-1

InbreedingCoeff
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SIO_000300: -5.9e-3

DP
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SIO_000300: 9.34824e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2070
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele num: 10298
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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ClippingRankSum
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VQSLOD
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DP
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BaseQRankSum
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SIO_000300: -5.43e-1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.677806341045416e-5
allele num: 37344
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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European (Finnish)
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South Asian
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East Asian
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African
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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MQ
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DP
type: SiteQuality
SIO_000300: 1.004974e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2434
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.333582228859437e-5
allele num: 10714
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3954
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 37344
num of homozygotes: 0

African
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num of homozygotes: 0

Other
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East Asian
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ClippingRankSum
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SIO_000300: -8.34e-1

InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 8.83e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 9.269558769002595e-5
allele num: 10788
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2534
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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MQ
type: SiteQuality
SIO_000300: 5.884e1

InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40524
num of homozygotes: 0

East Asian
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South Asian
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allele num: 11010
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Other
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Latino
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6872
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40120
num of homozygotes: 0

Other
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East Asian
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South Asian
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allele num: 11000
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European (Finnish)
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MQ
type: SiteQuality
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DP
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BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.452643811737362e-4
allele num: 6884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.68e0

DP
type: SiteQuality
SIO_000300: 1.021152e6

MQ
type: SiteQuality
SIO_000300: 6.153e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 1.174e0

QD
type: SiteQuality
SIO_000300: 1.459e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.808e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 7.29e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.621e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.95055e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.387e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: -2.054e0

QD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 9.9587e5

MQ
type: SiteQuality
SIO_000300: 5.514e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.216589861751152e-5
allele num: 10850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4188
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.802e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

FS
type: SiteQuality
SIO_000300: 6.233e0

DP
type: SiteQuality
SIO_000300: 9.72602e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2185
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 2135
bin: 9.75e1
variant carriers: 102

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10640
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.121098626716604e-4
allele num: 6408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 111
allele frequency: 2.838874680306906e-2
allele num: 3910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.760448296803401e-5
allele num: 36226
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.202e1

DP
type: SiteQuality
SIO_000300: 9.06742e5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.808e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

DP
type: SiteQuality
SIO_000300: 8.9266e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.185727938834024e-4
allele num: 6278
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
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SIO_000300: 1.21e0

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.615e0

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10414
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 460
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Latino
type: Population
allele count: 1
allele frequency: 2.801120448179272e-4
allele num: 3570
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African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2232
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.68e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 1.06e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.992688919518188e-5
allele num: 33374
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 9.67e0

FS
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.236e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

DP
type: SiteQuality
SIO_000300: 8.36472e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.036e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1548
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25964
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.32283e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.046e-1

DP
type: SiteQuality
SIO_000300: 7.27115e5

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

QD
type: SiteQuality
SIO_000300: 7.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.05708245243129e-4
allele num: 9460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.046e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

QD
type: SiteQuality
SIO_000300: 7.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.077354018530489e-4
allele num: 9282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1694
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.08215e5

VQSLOD
type: SiteQuality
SIO_000300: 4.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.68e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

QD
type: SiteQuality
SIO_000300: 1.08e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 7.194244604316547e-4
allele num: 1390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.02e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1230
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.743833017077799e-5
allele num: 21080
num of homozygotes: 0

MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.802151363810988e-5
allele num: 20824
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1206
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Non-Finnish)
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allele num: 20342
num of homozygotes: 0

Latino
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Other
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 3.5486160397445e-4
allele num: 2818
num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
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MQ
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DP
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 1218
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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allele count: 1
allele frequency: 2.241147467503362e-4
allele num: 4462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.69e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.87835e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 1.911e0

MQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

QD
type: SiteQuality
SIO_000300: 1.565e1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e-1

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 902

GenotypeQuality
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GenotypeQuality
all individuals: 9057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.500480861704174e-3
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 785
allele frequency: 1.177123320537428e-2
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 5.796217205613179e-3
allele num: 6556
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 49
allele frequency: 4.23582295988935e-3
allele num: 11568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.452e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

DP
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SIO_000300: 2.601942e6

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.29e0

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3805
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 128
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GenotypeQuality
all individuals: 3841
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.664e-1

FS
type: SiteQuality
SIO_000300: 2.144e0

DP
type: SiteQuality
SIO_000300: 2.5821e6

MQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.503e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 9516
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

DP
type: SiteQuality
SIO_000300: 2.584941e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 8.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.717e0

GenotypeQuality
all individuals: 2527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 51
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.891e0

VQSLOD
type: SiteQuality
SIO_000300: -2.333e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.255e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 8.683e0

DP
type: SiteQuality
SIO_000300: 2.585453e6

MQ
type: SiteQuality
SIO_000300: 5.855e1

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.182e1

GenotypeQuality
all individuals: 2535
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3883
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 29535
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9679
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 2.58684e6

FS
type: SiteQuality
SIO_000300: 1.016e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.227e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.106e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4943
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3883
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29534
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.545e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 2.587216e6

QD
type: SiteQuality
SIO_000300: 1.129e1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.135e1

FS
type: SiteQuality
SIO_000300: 1.985e0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 2.58756e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.711e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.273e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.912e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.358e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997871511227029e-5
allele num: 66714
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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FS
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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East Asian
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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FS
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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South Asian
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African
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Other
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European (Non-Finnish)
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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MQ
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DP
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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MQ
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BaseQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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African
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South Asian
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Other
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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DP
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