4-149075941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075941
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075941
    reference: chr 4
allele count: 27
allele frequency: 2.225005768533474e-4
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8241G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2177C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2126C>T
  hgvsp: ENSP00000350815.3:p.Thr709Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2126C>T
  hgvsp: ENSP00000341390.4:p.Thr709Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34502C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2138C>T
  hgvsp: ENSP00000347441.3:p.Thr713Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.55C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2138C>T
  hgvsp: ENSP00000421481.1:p.Thr713Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.323C>T
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10210
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr709Met
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-149075941-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075941
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075941
    reference: chr 4
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.55C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2138C>G
  hgvsp: ENSP00000421481.1:p.Thr713Arg
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2138C>G
  hgvsp: ENSP00000347441.3:p.Thr713Arg
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2177C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34502C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2126C>G
  hgvsp: ENSP00000341390.4:p.Thr709Arg
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8241G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2126C>G
  hgvsp: ENSP00000350815.3:p.Thr709Arg
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.323C>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9787
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr709Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

4-149075956-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075956
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075956
    reference: chr 4
allele count: 1
allele frequency: 8.307441806370146e-6
allele num: 120374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.40C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2111C>A
  hgvsp: ENSP00000350815.3:p.Pro704Gln
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2111C>A
  hgvsp: ENSP00000341390.4:p.Pro704Gln
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2192C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8256G>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34517C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2123C>A
  hgvsp: ENSP00000421481.1:p.Pro708Gln
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.308C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2123C>A
  hgvsp: ENSP00000347441.3:p.Pro708Gln
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro704Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

4-149075961-T-TTGAAAACATTGAACCTGAAATTGTATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075961
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075988
    reference: chr 4
allele count: 1
allele frequency: 8.38335401227323e-6
allele num: 119284
alternate allele: TTGAAAACATTGAACCTGAAATTGTATA
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8478
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4817
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

4-149075962-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075962
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075963
    reference: chr 4
allele count: 2
allele frequency: 1.685828922080987e-5
allele num: 118636
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8263dupG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.33dupC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.301dupC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2104dupC
  hgvsp: ENSP00000350815.3:p.Gln702ProfsTer42
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2116dupC
  hgvsp: ENSP00000347441.3:p.Gln706ProfsTer42
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2116dupC
  hgvsp: ENSP00000421481.1:p.Gln706ProfsTer42
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34524dupC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2104dupC
  hgvsp: ENSP00000341390.4:p.Gln702ProfsTer42
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2199dupC
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11630
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln702ProfsTer42
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

4-149075962-TGCGGGGGTGGGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075962
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075950
    reference: chr 4
allele count: 1
allele frequency: 8.429144610404936e-6
allele num: 118636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsp: ENSP00000341390.4:p.Pro698_Pro701del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsp: ENSP00000421481.1:p.Pro702_Pro705del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsp: ENSP00000350815.3:p.Pro698_Pro701del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsp: ENSP00000347441.3:p.Pro702_Pro705del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro698_Pro701del
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: TGCGGGGGTGGGG
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

4-149075964-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075964
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075964
    reference: chr 4
allele count: 2
allele frequency: 1.855253149292221e-5
allele num: 107802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.300G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2200G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2115G>C
  hgvsp: ENST00000511528.1:c.2115G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2103G>C
  hgvsp: ENST00000344721.4:c.2103G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.32G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34525G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2103G>C
  hgvsp: ENST00000358102.3:c.2103G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2115G>C
  hgvsp: ENST00000355292.3:c.2115G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8264C>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro701Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-149075964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075964
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075964
    reference: chr 4
allele count: 1
allele frequency: 9.276265746461104e-6
allele num: 107802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34525G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2115G>A
  hgvsp: ENST00000355292.3:c.2115G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.32G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2103G>A
  hgvsp: ENST00000358102.3:c.2103G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.300G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2103G>A
  hgvsp: ENST00000344721.4:c.2103G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2115G>A
  hgvsp: ENST00000511528.1:c.2115G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2200G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8264C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro701Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

4-149075964-CGGGGGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075964
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075958
    reference: chr 4
allele count: 1
allele frequency: 9.276265746461104e-6
allele num: 107802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.294_299delACCCCC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2109_2114delACCCCC
  hgvsp: ENSP00000347441.3:p.Pro704_Pro705del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2097_2102delACCCCC
  hgvsp: ENSP00000350815.3:p.Pro700_Pro701del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2097_2102delACCCCC
  hgvsp: ENSP00000341390.4:p.Pro700_Pro701del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2109_2114delACCCCC
  hgvsp: ENSP00000421481.1:p.Pro704_Pro705del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.26_31delACCCCC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8160
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro700_Pro701del
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CGGGGGT
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

4-149075964-CGGGGGTGGGGGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075964
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075952
    reference: chr 4
allele count: 3
allele frequency: 2.782879723938331e-5
allele num: 107802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsp: ENSP00000341390.4:p.Pro698_Pro701del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsp: ENSP00000421481.1:p.Pro702_Pro705del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsp: ENSP00000350815.3:p.Pro698_Pro701del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsp: ENSP00000347441.3:p.Pro702_Pro705del
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro698_Pro701del
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: CGGGGGTGGGGGT
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

4-149075965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075965
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075965
    reference: chr 4
allele count: 1
allele frequency: 1.357441494271597e-5
allele num: 73668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2201C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2114C>T
  hgvsp: ENSP00000347441.3:p.Pro705Leu
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2102C>T
  hgvsp: ENSP00000350815.3:p.Pro701Leu
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.31C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2102C>T
  hgvsp: ENSP00000341390.4:p.Pro701Leu
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2114C>T
  hgvsp: ENSP00000421481.1:p.Pro705Leu
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8265G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34526C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.299C>T
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro701Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

4-149075965-G-GGGGAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075965
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075970
    reference: chr 4
allele count: 1
allele frequency: 1.357441494271597e-5
allele num: 73668
alternate allele: GGGGAT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.30_31insATCCC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2202_2015-2201insATCCC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8268_79+8269insATGGG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2101_2102insATCCC
  hgvsp: ENSP00000341390.4:p.Pro701HisfsTer74
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2113_2114insATCCC
  hgvsp: ENSP00000347441.3:p.Pro705HisfsTer74
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2113_2114insATCCC
  hgvsp: ENSP00000421481.1:p.Pro705HisfsTer74
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.298_299insATCCC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2101_2102insATCCC
  hgvsp: ENSP00000350815.3:p.Pro701HisfsTer74
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5865
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6610
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro701HisfsTer74
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

4-149075970-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075970
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075970
    reference: chr 4
allele count: 21
allele frequency: 3.419749869723815e-4
allele num: 61408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2097A>C
  hgvsp: ENST00000344721.4:c.2097A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8270T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2109A>C
  hgvsp: ENST00000355292.3:c.2109A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.294A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2206A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.26A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2097A>C
  hgvsp: ENST00000358102.3:c.2097A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34531A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2109A>C
  hgvsp: ENST00000511528.1:c.2109A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13296
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10112
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Pro699Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

4-149075970-T-TGGGGGGGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075970
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075979
    reference: chr 4
allele count: 2
allele frequency: 3.256904637832204e-5
allele num: 61408
alternate allele: TGGGGGGGGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsp: ENSP00000421481.1:p.Pro701_Pro703dup
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsp: ENSP00000341390.4:p.Pro697_Pro699dup
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.293_294insCCCCCCCCC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsp: ENSP00000347441.3:p.Pro701_Pro703dup
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.25_26insCCCCCCCCC
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsp: ENSP00000350815.3:p.Pro697_Pro699dup
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro697_Pro699dup
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

4-149075972-G-GTGGAGTGCCAACCTGCATGTCAGCTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075972
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075999
    reference: chr 4
allele count: 1
allele frequency: 1.235360972476158e-5
allele num: 80948
alternate allele: GTGGAGTGCCAACCTGCATGTCAGCTGT
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS

4-149075976-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075976
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075976
    reference: chr 4
allele count: 39
allele frequency: 6.390718710058009e-4
allele num: 61026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2091A>C
  hgvsp: ENST00000344721.4:c.2091A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.288A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.20A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2212A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2091A>C
  hgvsp: ENST00000358102.3:c.2091A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2103A>C
  hgvsp: ENST00000355292.3:c.2103A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8276T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2103A>C
  hgvsp: ENST00000511528.1:c.2103A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34537A>C
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8086
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9704
  bin: 2.5e0
  variant carriers: 3
hgvs: p.Pro697Pro
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

4-149075976-T-TTTGGGGGGGGGGGGGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075976
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075993
    reference: chr 4
allele count: 1
allele frequency: 1.638645823091797e-5
allele num: 61026
alternate allele: TTTGGGGGGGGGGGGGGG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsp: ENSP00000347441.3:p.Gln706ProfsTer77
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsp: ENSP00000341390.4:p.Gln702ProfsTer77
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsp: ENSP00000421481.1:p.Gln706ProfsTer77
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsp: ENSP00000350815.3:p.Gln702ProfsTer77
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9704
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln702ProfsTer77
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

4-149075978-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075978
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075978
    reference: chr 4
allele count: 5
allele frequency: 6.052536012589275e-5
allele num: 82610
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2089C>G
  hgvsp: ENSP00000350815.3:p.Pro697Ala
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2089C>G
  hgvsp: ENSP00000341390.4:p.Pro697Ala
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8278G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.18C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2101C>G
  hgvsp: ENSP00000421481.1:p.Pro701Ala
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2214C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.286C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2101C>G
  hgvsp: ENSP00000347441.3:p.Pro701Ala
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34539C>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11280
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro697Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

4-149075980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075980
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075980
    reference: chr 4
allele count: 17
allele frequency: 2.203271209725498e-4
allele num: 77158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.16C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8280G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2087C>T
  hgvsp: ENSP00000350815.3:p.Pro696Leu
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2216C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.284C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2099C>T
  hgvsp: ENSP00000421481.1:p.Pro700Leu
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2087C>T
  hgvsp: ENSP00000341390.4:p.Pro696Leu
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34541C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2099C>T
  hgvsp: ENSP00000347441.3:p.Pro700Leu
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6803
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3265
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7952
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro696Leu
num of homozygotes: 2
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

4-149075981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075981
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075981
    reference: chr 4
allele count: 3
allele frequency: 3.940731399747793e-5
allele num: 76128
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2086C>T
  hgvsp: ENSP00000350815.3:p.Pro696Ser
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2098C>T
  hgvsp: ENSP00000347441.3:p.Pro700Ser
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2217C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2086C>T
  hgvsp: ENSP00000341390.4:p.Pro696Ser
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2098C>T
  hgvsp: ENSP00000421481.1:p.Pro700Ser
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8281G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.283C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34542C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.15C>T
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro696Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

4-149075982-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075982
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075982
    reference: chr 4
allele count: 11
allele frequency: 2.052238805970149e-4
allele num: 53600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34543A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2097A>C
  hgvsp: ENST00000511528.1:c.2097A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2085A>C
  hgvsp: ENST00000358102.3:c.2085A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2085A>C
  hgvsp: ENST00000344721.4:c.2085A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2097A>C
  hgvsp: ENST00000355292.3:c.2097A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.14A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.282A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2218A>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8282T>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12985
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12559
  bin: 2.5e0
  variant carriers: 4
hgvs: p.Pro695Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

4-149075994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149075994
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149075994
    reference: chr 4
allele count: 2
allele frequency: 3.809523809523809e-5
allele num: 52500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.270G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503174
  gene symbol: NR3C2
  hgvsc: ENST00000503174.1:n.2G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2085G>A
  hgvsp: ENST00000511528.1:c.2085G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34555G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2085G>A
  hgvsp: ENST00000355292.3:c.2085G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2073G>A
  hgvsp: ENST00000344721.4:c.2073G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2073G>A
  hgvsp: ENST00000358102.3:c.2073G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8294C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2230G>A
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln691Gln
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

4-149076002-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149076002
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149076002
    reference: chr 4
allele count: 2
allele frequency: 3.89741990802089e-5
allele num: 51316
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8302G>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2065C>A
  hgvsp: ENSP00000350815.3:p.Pro689Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2065C>A
  hgvsp: ENSP00000341390.4:p.Pro689Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.262C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2238C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2077C>A
  hgvsp: ENSP00000347441.3:p.Pro693Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2077C>A
  hgvsp: ENSP00000421481.1:p.Pro693Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34563C>A
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13637
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro689Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

4-149076012-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149076012
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149076012
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 42568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2067C>A
  hgvsp: ENSP00000421481.1:p.His689Gln
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.252C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2055C>A
  hgvsp: ENSP00000341390.4:p.His685Gln
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34573C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8312G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2248C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2055C>A
  hgvsp: ENSP00000350815.3:p.His685Gln
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2067C>A
  hgvsp: ENSP00000347441.3:p.His689Gln
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19663
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16029
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His685Gln
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

4-149076055-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149076055
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149076055
    reference: chr 4
allele count: 1
allele frequency: 5.283178360101437e-5
allele num: 18928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.212-3T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8355A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34616T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2027-3T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2027-3T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2015-3T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2015-3T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2291T>C
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31608
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2015-3T>C
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

4-149076062-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149076062
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149076062
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 18448
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2015-10T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.212-10T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34623T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2027-10T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8362A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2015-10T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2298T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2027-10T>C
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32187
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

4-149076068-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149076068
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149076068
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 18012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2015-16T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2304T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2027-16T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2015-16T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.212-16T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34629T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8368A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2027-16T>A
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

4-149076079-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149076079
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149076079
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 17550
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8379C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.212-27G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2015-27G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34640G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2315G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2015-27G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2027-27G>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2027-27G>C
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28098
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4792
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2627
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23779
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-149076091-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149076091
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149076091
    reference: chr 4
allele count: 1
allele frequency: 5.770340450086555e-5
allele num: 17330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.212-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2327T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34652T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2015-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8391A>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2015-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2027-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2027-39T>A
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-149076101-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149076101
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149076101
    reference: chr 4
allele count: 14
allele frequency: 8.151857458949575e-4
allele num: 17174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2015-49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2015-34662A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.212-49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.79+8401T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2015-49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2027-49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2015-2337A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2027-49A>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11410
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

4-149115848-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115848
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115848
    reference: chr 4
allele count: 1
allele frequency: 8.561350638676758e-6
allele num: 116804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2014+49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2014+49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2026+49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2014+49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2014+49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13295T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2026+49A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.211+49A>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-149115851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115851
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115851
    reference: chr 4
allele count: 1
allele frequency: 8.562963470397836e-6
allele num: 116782
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13292C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2026+46G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2014+46G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.211+46G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2014+46G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2014+46G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2026+46G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2014+46G>A
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10419
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16222
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

4-149115854-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115854
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115853
    reference: chr 4
allele count: 1
allele frequency: 8.542773667754446e-6
allele num: 117058
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13288delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2026+42delT
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.211+42delT
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2014+42delT
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2026+42delT
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2014+42delT
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2014+42delT
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2014+42delT
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12601
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16236
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: TA
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

4-149115857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115857
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115857
    reference: chr 4
allele count: 45
allele frequency: 3.845036485123981e-4
allele num: 117034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2014+40G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.211+40G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2014+40G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2014+40G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2014+40G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2026+40G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2026+40G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13286C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15143
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10756
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-149115866-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115866
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115865
    reference: chr 4
allele count: 1
allele frequency: 8.513246611727849e-6
allele num: 117464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2014+30delA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.211+30delA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2026+30delA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2026+30delA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2014+30delA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2014+30delA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13272delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2014+30delA
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: AT
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-149115867-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115867
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115867
    reference: chr 4
allele count: 1
allele frequency: 8.512956720128034e-6
allele num: 117468
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2014+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2026+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.211+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2026+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2014+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2014+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2014+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13276T>C
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5946
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

4-149115869-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115869
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115869
    reference: chr 4
allele count: 1
allele frequency: 8.504847763225038e-6
allele num: 117580
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2014+28A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2026+28A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2014+28A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2014+28A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2014+28A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.211+28A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2026+28A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13274T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

4-149115871-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115871
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115871
    reference: chr 4
allele count: 1
allele frequency: 8.49733183780293e-6
allele num: 117684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2014+26A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2026+26A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2026+26A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2014+26A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.211+26A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2014+26A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2014+26A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13272T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16298
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

4-149115886-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115886
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115886
    reference: chr 4
allele count: 1
allele frequency: 8.416799932665601e-6
allele num: 118810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.2014+11T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2026+11T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13257A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.211+11T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2026+11T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.2014+11T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.2014+11T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.2014+11T>C
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16322
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

4-149115915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115915
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115915
    reference: chr 4
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13228C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.193G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.2008G>A
  hgvsp: ENSP00000347441.3:p.Ala670Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1996G>A
  hgvsp: ENSP00000343907.4:p.Ala666Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1996G>A
  hgvsp: ENSP00000423510.1:p.Ala666Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1996G>A
  hgvsp: ENSP00000350815.3:p.Ala666Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1996G>A
  hgvsp: ENSP00000341390.4:p.Ala666Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.2008G>A
  hgvsp: ENSP00000421481.1:p.Ala670Thr
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala666Thr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

4-149115937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115937
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115937
    reference: chr 4
allele count: 3
allele frequency: 2.484965955966403e-5
allele num: 120726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1986C>T
  hgvsp: ENST00000511528.1:c.1986C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1974C>T
  hgvsp: ENST00000358102.3:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1974C>T
  hgvsp: ENST00000512865.1:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.171C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1974C>T
  hgvsp: ENST00000344721.4:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1986C>T
  hgvsp: ENST00000355292.3:c.1986C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.423C>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1974C>T
  hgvsp: ENST00000342437.4:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13206G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16333
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4410
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys658Cys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

4-149115943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115943
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115943
    reference: chr 4
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1980T>C
  hgvsp: ENST00000511528.1:c.1980T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.165T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1968T>C
  hgvsp: ENST00000342437.4:c.1968T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1968T>C
  hgvsp: ENST00000512865.1:c.1968T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1968T>C
  hgvsp: ENST00000358102.3:c.1968T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.417T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1980T>C
  hgvsp: ENST00000355292.3:c.1980T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1968T>C
  hgvsp: ENST00000344721.4:c.1968T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13200A>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro656Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

4-149115994-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149115994
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149115994
    reference: chr 4
allele count: 3
allele frequency: 2.480650922802143e-5
allele num: 120936
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1917T>C
  hgvsp: ENST00000358102.3:c.1917T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.366T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.114T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1917T>C
  hgvsp: ENST00000344721.4:c.1917T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1917T>C
  hgvsp: ENST00000342437.4:c.1917T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1917T>C
  hgvsp: ENST00000512865.1:c.1917T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13149A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1929T>C
  hgvsp: ENST00000355292.3:c.1929T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1929T>C
  hgvsp: ENST00000511528.1:c.1929T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys639Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

4-149116011-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116011
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116011
    reference: chr 4
allele count: 2
allele frequency: 1.657055743355207e-5
allele num: 120696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1912C>A
  hgvsp: ENSP00000347441.3:p.Gln638Lys
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.97C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.349C>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1912C>A
  hgvsp: ENSP00000421481.1:p.Gln638Lys
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13132G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1900C>A
  hgvsp: ENSP00000341390.4:p.Gln634Lys
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1900C>A
  hgvsp: ENSP00000350815.3:p.Gln634Lys
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1900C>A
  hgvsp: ENSP00000423510.1:p.Gln634Lys
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1900C>A
  hgvsp: ENSP00000343907.4:p.Gln634Lys
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln634Lys
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

4-149116017-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116017
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116017
    reference: chr 4
allele count: 107
allele frequency: 8.876868705304552e-4
allele num: 120538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-4T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-4T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-4T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-4T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-4T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-4T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-4T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-4T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13126A>G
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19339
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 1
hgvs: c.1898-4T>C
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

4-149116018-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116018
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116018
    reference: chr 4
allele count: 1
allele frequency: 8.296414289743973e-6
allele num: 120534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-5A>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-5A>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-5A>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-5A>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-5A>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-5A>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-5A>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-5A>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13125T>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1898-5A>T
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

4-149116027-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116027
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116027
    reference: chr 4
allele count: 1
allele frequency: 8.31255195344971e-6
allele num: 120300
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-14A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-14A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-14A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-14A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-14A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-14A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-14A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13116T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-14A>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8980
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3789
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16361
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-149116031-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116031
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116031
    reference: chr 4
allele count: 1
allele frequency: 8.316284949187499e-6
allele num: 120246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-18T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-18T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13112A>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-18T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-18T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-18T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-18T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-18T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-18T>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

4-149116033-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116033
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116033
    reference: chr 4
allele count: 1
allele frequency: 8.32126749546491e-6
allele num: 120174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-20T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-20T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-20T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-20T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-20T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-20T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-20T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13110A>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-20T>A
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

4-149116035-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116035
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116035
    reference: chr 4
allele count: 69091
allele frequency: 5.757967197813187e-1
allele num: 119992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-22T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-22T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-22T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13108A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-22T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-22T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-22T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-22T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-22T>C
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 8.75e1
  variant carriers: 1174
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 6.75e1
  variant carriers: 3060
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 8.25e1
  variant carriers: 1563
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 2.25e1
  variant carriers: 1363
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 7.25e1
  variant carriers: 2641
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 3.75e1
  variant carriers: 3961
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 4.75e1
  variant carriers: 4802
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 6.25e1
  variant carriers: 3712
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 421
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 3.25e1
  variant carriers: 3058
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 9.25e1
  variant carriers: 910
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 4.25e1
  variant carriers: 4563
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 2.75e1
  variant carriers: 2164
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 5.75e1
  variant carriers: 4243
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 5.25e1
  variant carriers: 4727
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 7.75e1
  variant carriers: 2135
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 9.75e1
  variant carriers: 3772
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.25e1
  variant carriers: 345
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.75e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 4374
  bin: 6.25e1
  variant carriers: 182
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.75e1
  variant carriers: 142
num of homozygotes: 20093
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

4-149116038-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116038
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116038
    reference: chr 4
allele count: 3
allele frequency: 2.511511092507325e-5
allele num: 119450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-25A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13105T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-25A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-25A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-25A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-25A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-25A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-25A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-25A>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

4-149116040-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116040
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116040
    reference: chr 4
allele count: 2
allele frequency: 1.674761346508122e-5
allele num: 119420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-27A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-27A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-27A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-27A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-27A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13103T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-27A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-27A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-27A>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10606
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

4-149116040-TTAAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116040
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116035
    reference: chr 4
allele count: 2
allele frequency: 1.674761346508122e-5
allele num: 119420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-32_1898-28delTTTTA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-32_1898-28delTTTTA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-32_1898-28delTTTTA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-32_95-28delTTTTA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-32_347-28delTTTTA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-32_1898-28delTTTTA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-32_1910-28delTTTTA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-32_1910-28delTTTTA
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TTAAAA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-149116042-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116042
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116042
    reference: chr 4
allele count: 4
allele frequency: 3.352386060778759e-5
allele num: 119318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-29T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-29T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-29T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-29T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13101A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-29T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-29T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-29T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-29T>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

4-149116051-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116051
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116051
    reference: chr 4
allele count: 1
allele frequency: 8.410287463625507e-6
allele num: 118902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-38A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13092T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-38A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-38A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-38A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-38A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-38A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-38A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-38A>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-149116052-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116052
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116052
    reference: chr 4
allele count: 1
allele frequency: 8.410146000134562e-6
allele num: 118904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-39T>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13091A>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3831
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/4-149116053-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149116053
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149116053
    reference: chr 4
allele count: 1
allele frequency: 8.413117733169558e-6
allele num: 118862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1898-40G>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.347-40G>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1898-40G>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1910-40G>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1898-40G>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250354
  ensembl transcript: ENST00000514843
  gene symbol: RP11-76G10.1
  hgvsc: ENST00000514843.1:n.80-13090C>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1898-40G>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1910-40G>T
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000503313
  gene symbol: NR3C2
  hgvsc: ENST00000503313.1:n.95-40G>T
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9608
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18106
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

4-149181082-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181082
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181082
    reference: chr 4
allele count: 3
allele frequency: 2.476596166229135e-5
allele num: 121134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1897+48T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.346+48T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1897+48T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1909+36T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1897+48T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1897+48T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1909+36T>C
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7946
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

4-149181090-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181090
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181090
    reference: chr 4
allele count: 3
allele frequency: 2.477700693756194e-5
allele num: 121080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1897+40C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1909+28C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1897+40C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1897+40C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.346+40C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1897+40C>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1909+28C>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29263
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11608
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

4-149181100-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181100
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181100
    reference: chr 4
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1909+18A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1909+18A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1897+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1897+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1897+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1897+30A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.346+30A>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11606
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

4-149181113-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181113
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181113
    reference: chr 4
allele count: 2
allele frequency: 1.648967746190884e-5
allele num: 121288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1909+5G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1897+17G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1897+17G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1909+5G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1897+17G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1897+17G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.346+17G>A
  variant of: http://identifiers.org/hgnc/7979
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1909+5G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

4-149181115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181115
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181115
    reference: chr 4
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1897+15G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1897+15G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.346+15G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1909+3G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1897+15G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1909+3G>A
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1897+15G>A
  variant of: http://identifiers.org/hgnc/7979
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23433
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11604
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1909+3G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/4-149181116-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181116
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181116
    reference: chr 4
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1909+2T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1897+14T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1909+2T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1897+14T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1897+14T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.346+14T>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1897+14T>G
  variant of: http://identifiers.org/hgnc/7979
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29587
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1909+2T>G
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

4-149181142-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181142
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181142
    reference: chr 4
allele count: 3
allele frequency: 2.472513887286333e-5
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1885A>C
  hgvsp: ENST00000512865.1:c.1885A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1885A>C
  hgvsp: ENST00000342437.4:c.1885A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1885A>C
  hgvsp: ENST00000358102.3:c.1885A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1885A>C
  hgvsp: ENST00000511528.1:c.1885A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1885A>C
  hgvsp: ENST00000344721.4:c.1885A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1885A>C
  hgvsp: ENST00000355292.3:c.1885A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.334A>C
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg629Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

4-149181176-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181176
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181176
    reference: chr 4
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1851A>G
  hgvsp: ENST00000344721.4:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1851A>G
  hgvsp: ENST00000355292.3:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.300A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1851A>G
  hgvsp: ENST00000358102.3:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1851A>G
  hgvsp: ENST00000511528.1:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1851A>G
  hgvsp: ENST00000342437.4:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1851A>G
  hgvsp: ENST00000512865.1:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val617Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

4-149181177-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181177
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181177
    reference: chr 4
allele count: 4
allele frequency: 3.297283038776049e-5
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1850T>C
  hgvsp: ENSP00000341390.4:p.Val617Ala
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1850T>C
  hgvsp: ENSP00000423510.1:p.Val617Ala
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1850T>C
  hgvsp: ENSP00000347441.3:p.Val617Ala
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.299T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1850T>C
  hgvsp: ENSP00000421481.1:p.Val617Ala
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1850T>C
  hgvsp: ENSP00000343907.4:p.Val617Ala
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1850T>C
  hgvsp: ENSP00000350815.3:p.Val617Ala
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11600
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29612
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val617Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

4-149181203-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181203
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181203
    reference: chr 4
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1824T>C
  hgvsp: ENST00000358102.3:c.1824T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.273T>C
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1824T>C
  hgvsp: ENST00000344721.4:c.1824T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1824T>C
  hgvsp: ENST00000511528.1:c.1824T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1824T>C
  hgvsp: ENST00000512865.1:c.1824T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1824T>C
  hgvsp: ENST00000355292.3:c.1824T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1824T>C
  hgvsp: ENST00000342437.4:c.1824T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp608Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

4-149181221-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181221
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181221
    reference: chr 4
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1806A>G
  hgvsp: ENSP00000343907.4:p.Ile602Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1806A>G
  hgvsp: ENSP00000421481.1:p.Ile602Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1806A>G
  hgvsp: ENSP00000341390.4:p.Ile602Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1806A>G
  hgvsp: ENSP00000350815.3:p.Ile602Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1806A>G
  hgvsp: ENSP00000423510.1:p.Ile602Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1806A>G
  hgvsp: ENSP00000347441.3:p.Ile602Met
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.255A>G
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile602Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

4-149181222-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181222
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181222
    reference: chr 4
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1805T>C
  hgvsp: ENSP00000347441.3:p.Ile602Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1805T>C
  hgvsp: ENSP00000341390.4:p.Ile602Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1805T>C
  hgvsp: ENSP00000423510.1:p.Ile602Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1805T>C
  hgvsp: ENSP00000350815.3:p.Ile602Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1805T>C
  hgvsp: ENSP00000343907.4:p.Ile602Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1805T>C
  hgvsp: ENSP00000421481.1:p.Ile602Thr
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.254T>C
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7970
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11583
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile602Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

4-149181236-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181236
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 149181236
    reference: chr 4
allele count: 124
allele frequency: 1.023237391074729e-3
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151623
  ensembl transcript: ENST00000504753
  gene symbol: NR3C2
  hgvsc: ENST00000504753.1:n.240A>G
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000350815
  ensembl transcript: ENST00000358102
  gene symbol: NR3C2
  hgvsc: ENST00000358102.3:c.1791A>G
  hgvsp: ENST00000358102.3:c.1791A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000347441
  ensembl transcript: ENST00000355292
  gene symbol: NR3C2
  hgvsc: ENST00000355292.3:c.1791A>G
  hgvsp: ENST00000355292.3:c.1791A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000423510
  ensembl transcript: ENST00000512865
  gene symbol: NR3C2
  hgvsc: ENST00000512865.1:c.1791A>G
  hgvsp: ENST00000512865.1:c.1791A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000341390
  ensembl transcript: ENST00000344721
  gene symbol: NR3C2
  hgvsc: ENST00000344721.4:c.1791A>G
  hgvsp: ENST00000344721.4:c.1791A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000421481
  ensembl transcript: ENST00000511528
  gene symbol: NR3C2
  hgvsc: ENST00000511528.1:c.1791A>G
  hgvsp: ENST00000511528.1:c.1791A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151623
  ensembl protein: ENSP00000343907
  ensembl transcript: ENST00000342437
  gene symbol: NR3C2
  hgvsc: ENST00000342437.4:c.1791A>G
  hgvsp: ENST00000342437.4:c.1791A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7979
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12323
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 23466
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7948
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser597Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

4-149181241-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 149181241
    reference: chr 4
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: G
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ser596Pro
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12123
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8476
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 2893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4543
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.994962820820341e-5
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.030802813485326e-3
allele num: 16492
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

DP
type: SiteQuality
SIO_000300: 2.953389e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
all individuals: 19275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12123
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8476
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

DP
type: SiteQuality
SIO_000300: 2.953389e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5169
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8301
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3887
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513225591671206e-5
allele num: 66084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.899e1

FS
type: SiteQuality
SIO_000300: 1.719e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.587e0

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

QD
type: SiteQuality
SIO_000300: 4.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 2.809686e6

GenotypeQuality
all individuals: 8289
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1490
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8667
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3773
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12369871402327e-5
allele num: 16330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.618e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e0

QD
type: SiteQuality
SIO_000300: 6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 2.736419e6

MQ
type: SiteQuality
SIO_000300: 5.464e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.043e0

GenotypeQuality
all individuals: 1677
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2711
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8288
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.07181913128955e-5
allele num: 65108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.397e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.23e-1

DP
type: SiteQuality
SIO_000300: 2.695382e6

GenotypeQuality
all individuals: 1280
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8288
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.397e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

DP
type: SiteQuality
SIO_000300: 2.695382e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

GenotypeQuality
all individuals: 4029
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.550001775000888e-5
allele num: 56338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.857e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.87e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 2.571638e6

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
all individuals: 2553
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3586
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7513
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.346788525006347e-5
allele num: 15756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.87e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 2.857e0

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

DP
type: SiteQuality
SIO_000300: 2.571638e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

GenotypeQuality
all individuals: 586
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2553
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5422
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.346788525006347e-5
allele num: 15756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56338
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 2.857e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 2.571638e6

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.87e-2

GenotypeQuality
all individuals: 1949
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2553
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5422
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.075268817204301e-4
allele num: 9300
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.269357705001269e-4
allele num: 15756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.87e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 2.857e0

DP
type: SiteQuality
SIO_000300: 2.571638e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3822
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.576257213520198e-5
allele num: 38816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.78e-1

MQ
type: SiteQuality
SIO_000300: 5.77e1

DP
type: SiteQuality
SIO_000300: 1.610037e6

VQSLOD
type: SiteQuality
SIO_000300: -8.038e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

FS
type: SiteQuality
SIO_000300: 2.1657e1

MQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

QD
type: SiteQuality
SIO_000300: 3.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.72e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3822
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.576257213520198e-5
allele num: 38816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.1657e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.21e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.038e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

DP
type: SiteQuality
SIO_000300: 1.610037e6

QD
type: SiteQuality
SIO_000300: 3.64e0

MQ
type: SiteQuality
SIO_000300: 5.77e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.78e-1

GenotypeQuality
all individuals: 3470
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1228
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 946
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 361
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.177952240758914e-5
allele num: 12228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 6.881066203100101e-4
allele num: 27612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2760
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.301066874837367e-4
allele num: 7686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.539e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

QD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 1.3938e1

DP
type: SiteQuality
SIO_000300: 1.486671e6

MQ
type: SiteQuality
SIO_000300: 5.85e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1741
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variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.243227582210633e-5
allele num: 27612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3938e1

DP
type: SiteQuality
SIO_000300: 1.486671e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.539e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

QD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.066e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2734
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.308082906337996e-5
allele num: 43326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5232
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

QD
type: SiteQuality
SIO_000300: 5.8e-1

MQ
type: SiteQuality
SIO_000300: 5.766e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.12e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: -2.656e0

DP
type: SiteQuality
SIO_000300: 1.368128e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.67e-1

FS
type: SiteQuality
SIO_000300: 2.029e1

GenotypeQuality
all individuals: 4956
bin: 6.25e1
variant carriers: 2

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 5.25e1
variant carriers: 5

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 5

GenotypeQuality
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bin: 2.25e1
variant carriers: 3

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 413
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variant carriers: 4

GenotypeQuality
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bin: 2.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.688048615800135e-4
allele num: 5924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 1.265456649070793e-3
allele num: 27658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.460629921259842e-4
allele num: 12192
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.709e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.54e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.298209e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.739e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

QD
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 766
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.615590425916552e-5
allele num: 27658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.54e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 1.298209e6

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.709e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.739e1

VQSLOD
type: SiteQuality
SIO_000300: -1.159e0

GenotypeQuality
all individuals: 3921
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19752
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 830
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.063717937097797e-5
allele num: 44132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13420
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.765e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.23e-2

FS
type: SiteQuality
SIO_000300: 1.405e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

DP
type: SiteQuality
SIO_000300: 1.20663e6

VQSLOD
type: SiteQuality
SIO_000300: -1.248e0

QD
type: SiteQuality
SIO_000300: 1.885e1

GenotypeQuality
all individuals: 18599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 853
bin: 4.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 2003
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3773
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variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 4.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 4.144319843978547e-4
allele num: 41020
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12822
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.155068e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.747e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.435e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

QD
type: SiteQuality
SIO_000300: 2.366e1

GenotypeQuality
all individuals: 2017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
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variant carriers: 0

GenotypeQuality
all individuals: 2000
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 684
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variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 1.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.433102081268583e-5
allele num: 40360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.139682e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

VQSLOD
type: SiteQuality
SIO_000300: -2.425e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.631e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.91e-2

GenotypeQuality
all individuals: 14861
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variant carriers: 0

GenotypeQuality
all individuals: 496
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variant carriers: 2

GenotypeQuality
all individuals: 1602
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variant carriers: 2

GenotypeQuality
all individuals: 491
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variant carriers: 0

GenotypeQuality
all individuals: 7954
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 696
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variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.42600679281902e-4
allele num: 4122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 3.134304967873374e-4
allele num: 25524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.727171077152441e-4
allele num: 5366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

QD
type: SiteQuality
SIO_000300: 4.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.719e0

DP
type: SiteQuality
SIO_000300: 1.093455e6

FS
type: SiteQuality
SIO_000300: 1.1167e1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.140000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.142e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

GenotypeQuality
all individuals: 6849
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5250
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GenotypeQuality
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GenotypeQuality
all individuals: 1315
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GenotypeQuality
all individuals: 735
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 589
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GenotypeQuality
all individuals: 670
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GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 10236
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variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.675775253300584e-5
allele num: 26056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2430
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 4.996e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -9.618e-1

DP
type: SiteQuality
SIO_000300: 8.8504e5

GenotypeQuality
all individuals: 1310
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12061
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1795
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
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variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25522
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.917177914110429e-4
allele num: 10432
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.28129e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

FS
type: SiteQuality
SIO_000300: 6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.426e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.36e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.991e0

QD
type: SiteQuality
SIO_000300: 1.088e1

MQ
type: SiteQuality
SIO_000300: 5.886e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.31002e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.944e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 9.75e1
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GenotypeQuality
all individuals: 894
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
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variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.75e1
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GenotypeQuality
all individuals: 420
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GenotypeQuality
all individuals: 2287
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GenotypeQuality
all individuals: 30
bin: 4.25e1
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GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.25e1
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GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.42897970848814e-4
allele num: 6998
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

VQSLOD
type: SiteQuality
SIO_000300: -1.929e0

FS
type: SiteQuality
SIO_000300: 2.415e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

DP
type: SiteQuality
SIO_000300: 4.52175e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.43e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 621
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 369
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 965
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variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.56e-2

MQ
type: SiteQuality
SIO_000300: 5.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 4.38412e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.073e1

DP
type: SiteQuality
SIO_000300: 4.22564e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.59e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.668e-1

QD
type: SiteQuality
SIO_000300: 1.515e1

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

DP
type: SiteQuality
SIO_000300: 3.94909e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.770000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 2001
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.280737704918033e-4
allele num: 7808
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

VQSLOD
type: SiteQuality
SIO_000300: -1.673e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.75e-1

DP
type: SiteQuality
SIO_000300: 3.74764e5

FS
type: SiteQuality
SIO_000300: 1.842e0

MQ
type: SiteQuality
SIO_000300: 5.848e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-2

GenotypeQuality
all individuals: 12832
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 418
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GenotypeQuality
all individuals: 616
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.168112074716478e-3
allele num: 5996
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.050505050505051e-3
allele num: 198
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

DP
type: SiteQuality
SIO_000300: 3.70589e5

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

FS
type: SiteQuality
SIO_000300: 8.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.77e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 5294
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8464
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 197
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GenotypeQuality
all individuals: 2270
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GenotypeQuality
all individuals: 1236
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3393
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GenotypeQuality
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GenotypeQuality
all individuals: 2581
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variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.129704548240775e-5
allele num: 16314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.853295e6

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

FS
type: SiteQuality
SIO_000300: 7.014e0

VQSLOD
type: SiteQuality
SIO_000300: -2.298e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
all individuals: 2585
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 2803
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 181
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1511
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558797855094152e-5
allele num: 64152
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

QD
type: SiteQuality
SIO_000300: 1.305e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.862787e6

GenotypeQuality
all individuals: 1401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1718
bin: 8.75e1
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GenotypeQuality
all individuals: 2650
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.837044892188053e-5
allele num: 11316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

DP
type: SiteQuality
SIO_000300: 1.872772e6

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 42

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2649
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 42
allele frequency: 6.526806526806527e-4
allele num: 64350
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.14638334406525e-4
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.528584530724549e-4
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.886224e6

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.275e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

GenotypeQuality
all individuals: 162
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 2708
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547221190741428e-5
allele num: 64632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.191e0

DP
type: SiteQuality
SIO_000300: 1.920245e6

QD
type: SiteQuality
SIO_000300: 1.185e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 6.087e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.331e0

GenotypeQuality
all individuals: 2779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16283
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547269070091289e-5
allele num: 64630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9362
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.52e-1

QD
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.431e0

DP
type: SiteQuality
SIO_000300: 1.923566e6

GenotypeQuality
all individuals: 1301
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 245
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variant carriers: 0

GenotypeQuality
all individuals: 6001
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.200480192076831e-4
allele num: 8330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.928445e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-1

FS
type: SiteQuality
SIO_000300: 3.928e0

VQSLOD
type: SiteQuality
SIO_000300: -2.072e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 2.03e1

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
all individuals: 435
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2809
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 4231
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

FS
type: SiteQuality
SIO_000300: 1.197e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.839e0

DP
type: SiteQuality
SIO_000300: 1.934131e6

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

QD
type: SiteQuality
SIO_000300: 1.65e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 2890
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526344709689236e-5
allele num: 65516
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.98e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

DP
type: SiteQuality
SIO_000300: 1.962412e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.75e0

FS
type: SiteQuality
SIO_000300: 9.259e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.331e0

MQRankSum
type: SiteQuality
SIO_000300: 1.96e0

GenotypeQuality
all individuals: 16331
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 1850
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GenotypeQuality
all individuals: 2924
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511670093118878e-5
allele num: 66152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.363e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 2.084e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 1.980541e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.504672897196261e-4
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.034e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.95e-1

DP
type: SiteQuality
SIO_000300: 1.987242e6

MQRankSum
type: SiteQuality
SIO_000300: -1.038e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 307
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GenotypeQuality
all individuals: 29
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.136e1

FS
type: SiteQuality
SIO_000300: 8.52e-1

DP
type: SiteQuality
SIO_000300: 1.988462e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.285e0

VQSLOD
type: SiteQuality
SIO_000300: -1.678e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.352e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.311e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2945
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GenotypeQuality
all individuals: 21377
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.710623422023694e-5
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.107e1

FS
type: SiteQuality
SIO_000300: 9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.988631e6

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 178
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GenotypeQuality
all individuals: 16335
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 6510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20669
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.096e1

VQSLOD
type: SiteQuality
SIO_000300: -1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

DP
type: SiteQuality
SIO_000300: 1.982656e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

FS
type: SiteQuality
SIO_000300: 1.2695e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6489
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
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GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16404
bin: 9.75e1
variant carriers: 107

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
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GenotypeQuality
all individuals: 651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20144
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 104
allele frequency: 1.027667984189723e-2
allele num: 10120
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.982977e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

FS
type: SiteQuality
SIO_000300: 6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
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GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 2766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 4385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506750241080039e-5
allele num: 66368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 6.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: -6.02e-1

DP
type: SiteQuality
SIO_000300: 1.981324e6

MQRankSum
type: SiteQuality
SIO_000300: 2.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.58e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
all individuals: 2922
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 251
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variant carriers: 0

GenotypeQuality
all individuals: 6362
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 229
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19395
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variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2766
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.978367e6

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.265e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e0

GenotypeQuality
all individuals: 496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 6325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18422
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510710940568632e-5
allele num: 66194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e-1

DP
type: SiteQuality
SIO_000300: 1.976986e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

QD
type: SiteQuality
SIO_000300: 1.458e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeQuality
all individuals: 418
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17897
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6291
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511761504505049e-5
allele num: 66148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.453e0

VQSLOD
type: SiteQuality
SIO_000300: -5.459000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.898e1

DP
type: SiteQuality
SIO_000300: 1.976963e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 108

GenotypeQuality
all individuals: 272
bin: 5.25e1
variant carriers: 172

GenotypeQuality
all individuals: 537
bin: 2.25e1
variant carriers: 77

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 15

GenotypeQuality
all individuals: 94
bin: 7.5e0
variant carriers: 19

GenotypeQuality
all individuals: 247
bin: 3.75e1
variant carriers: 84

GenotypeQuality
all individuals: 837
bin: 9.25e1
variant carriers: 454

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 9

GenotypeQuality
all individuals: 308
bin: 3.25e1
variant carriers: 85

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 64

GenotypeQuality
all individuals: 687
bin: 7.25e1
variant carriers: 192

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 306

GenotypeQuality
all individuals: 48588
bin: 9.75e1
variant carriers: 46466

GenotypeQuality
all individuals: 1348
bin: 6.75e1
variant carriers: 247

African
type: Population
allele count: 5574
allele frequency: 5.565095846645367e-1
allele num: 10016
num of homozygotes: 1523

South Asian
type: Population
allele count: 10742
allele frequency: 6.52374590064375e-1
allele num: 16466
num of homozygotes: 3541

Other
type: Population
allele count: 546
allele frequency: 6.080178173719376e-1
allele num: 898
num of homozygotes: 159

European (Finnish)
type: Population
allele count: 3557
allele frequency: 5.417301248857752e-1
allele num: 6566
num of homozygotes: 954

European (Non-Finnish)
type: Population
allele count: 35063
allele frequency: 5.311770943796394e-1
allele num: 66010
num of homozygotes: 9262

Latino
type: Population
allele count: 7164
allele frequency: 6.232817121976684e-1
allele num: 11494
num of homozygotes: 2216

East Asian
type: Population
allele count: 6445
allele frequency: 7.545071411847343e-1
allele num: 8542
num of homozygotes: 2438

DP
type: SiteQuality
SIO_000300: 3.230386e6

QD
type: SiteQuality
SIO_000300: 2.486e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

VQSLOD
type: SiteQuality
SIO_000300: 4.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.22e-2

GenotypeQuality
all individuals: 897
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15177
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3216
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18122
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 578
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4357
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.823929961089494e-4
allele num: 16448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.424e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 4.884e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

DP
type: SiteQuality
SIO_000300: 2.262297e6

QD
type: SiteQuality
SIO_000300: 1.406e1

GenotypeQuality
all individuals: 291
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18120
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 7.25e1
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GenotypeQuality
all individuals: 14853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3864
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6420
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.018952516812716e-4
allele num: 9814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520588771972508e-5
allele num: 65764
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

DP
type: SiteQuality
SIO_000300: 2.256787e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.035e0

QD
type: SiteQuality
SIO_000300: 1.865e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.041177543945015e-5
allele num: 65764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.865e1

MQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.035e0

DP
type: SiteQuality
SIO_000300: 2.256787e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

GenotypeQuality
all individuals: 3855
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4325
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.728132387706856e-4
allele num: 8460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

MQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

DP
type: SiteQuality
SIO_000300: 2.247824e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.543e1

GenotypeQuality
all individuals: 3212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526531110704036e-5
allele num: 65508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e0

DP
type: SiteQuality
SIO_000300: 2.214178e6

QD
type: SiteQuality
SIO_000300: 1.551e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4226
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.213524e6

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 2.943e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
all individuals: 3210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 12032
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.213062e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.400000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.141e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.178e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

QD
type: SiteQuality
SIO_000300: 1.011e1

GenotypeQuality
all individuals: 2470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 3665
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variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11615
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29087
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596503375454388e-4
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

DP
type: SiteQuality
SIO_000300: 2.149629e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.637e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819946614899296e-4
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.196e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

DP
type: SiteQuality
SIO_000300: 2.151853e6

FS
type: SiteQuality
SIO_000300: 3.443e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.152471e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.77e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2477
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998320940273447e-5
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 9.425000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.894e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 2.15419e6

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

DP
type: SiteQuality
SIO_000300: 2.154282e6

VQSLOD
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SIO_000300: -2.58e-2

BaseQRankSum
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SIO_000300: 2.05e0

FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 7.64e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.534e0

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
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VQSLOD
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SIO_000300: -4.226e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.154282e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.480278422273782e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.619e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.773e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 1.779e0

QD
type: SiteQuality
SIO_000300: 1.229e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 2.154951e6

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 2.154922e6

MQ
type: SiteQuality
SIO_000300: 5.916e1

QD
type: SiteQuality
SIO_000300: 1.321e1

MQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: -2.642e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.99538355466291e-5
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

DP
type: SiteQuality
SIO_000300: 2.155008e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.361e0

QD
type: SiteQuality
SIO_000300: 1.248e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
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African
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allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

DP
type: SiteQuality
SIO_000300: 2.154355e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.855e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.15323e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 1.134615384615385e-2
allele num: 10400
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66676
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Other
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East Asian
type: Population
allele count: 0
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Latino
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allele frequency: 5.202011444425178e-4
allele num: 11534
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FS
type: SiteQuality
SIO_000300: 5.81e-1

ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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DP
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MQ
type: SiteQuality
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