7-99274154-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274154
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274154
    reference: chr 7
allele count: 2
allele frequency: 1.773238287761109e-5
allele num: 112788
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-323A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.217A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.117A>G
  hgvsp: ENST00000339843.2:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-323A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-323A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.209A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-323A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.117A>G
  hgvsp: ENST00000456417.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-323A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-174A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-323A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469887
  gene symbol: CYP3A5
  hgvsc: ENST00000469887.1:n.46A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-323A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-323A>G
  variant of: http://identifiers.org/hgnc/2638
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr39Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

7-99274178-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274178
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274178
    reference: chr 7
allele count: 6
allele frequency: 5.319997872000851e-5
allele num: 112782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-198G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.93G>A
  hgvsp: ENST00000339843.2:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-347G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469887
  gene symbol: CYP3A5
  hgvsc: ENST00000469887.1:n.22G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-347G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.93G>A
  hgvsp: ENST00000456417.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-347G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.193G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.185G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-347G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-347G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-347G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-347G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-347G>A
  variant of: http://identifiers.org/hgnc/2638
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala31Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

7-99274179-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274179
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274179
    reference: chr 7
allele count: 11
allele frequency: 9.753502394041497e-5
allele num: 112780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.192C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.92C>T
  hgvsp: ENSP00000415399.1:p.Ala31Val
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-348C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.92C>T
  hgvsp: ENSP00000343074.2:p.Ala31Val
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-199C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-348C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-348C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-348C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469887
  gene symbol: CYP3A5
  hgvsc: ENST00000469887.1:n.21C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.184C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-348C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-348C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-348C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-348C>T
  variant of: http://identifiers.org/hgnc/2638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala31Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

7-99274183-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274183
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274183
    reference: chr 7
allele count: 1
allele frequency: 8.86713485138682e-6
allele num: 112776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-203T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-352T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-352T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-352T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.188T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-352T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469887
  gene symbol: CYP3A5
  hgvsc: ENST00000469887.1:n.17T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.180T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.88T>A
  hgvsp: ENSP00000343074.2:p.Ser30Thr
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-352T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.88T>A
  hgvsp: ENSP00000415399.1:p.Ser30Thr
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-352T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-352T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-352T>A
  variant of: http://identifiers.org/hgnc/2638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser30Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

7-99274187-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274187
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274187
    reference: chr 7
allele count: 1
allele frequency: 8.86713485138682e-6
allele num: 112776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.84C>G
  hgvsp: ENST00000339843.2:c.84C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-356C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.184C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-207C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-356C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.176C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-356C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-356C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-356C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.84C>G
  hgvsp: ENST00000456417.1:c.84C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-356C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469887
  gene symbol: CYP3A5
  hgvsc: ENST00000469887.1:n.13C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-356C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-356C>G
  variant of: http://identifiers.org/hgnc/2638
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro28Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

7-99274194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274194
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274194
    reference: chr 7
allele count: 2
allele frequency: 1.773458421267313e-5
allele num: 112774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-363G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-363G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.77G>A
  hgvsp: ENSP00000343074.2:p.Arg26Lys
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469887
  gene symbol: CYP3A5
  hgvsc: ENST00000469887.1:n.6G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-363G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-214G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-363G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-363G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.169G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-363G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-363G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.177G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.77G>A
  hgvsp: ENSP00000415399.1:p.Arg26Lys
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-363G>A
  variant of: http://identifiers.org/hgnc/2638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg26Lys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-99274204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274204
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274204
    reference: chr 7
allele count: 1
allele frequency: 8.868707651920962e-6
allele num: 112756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-373C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-5C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-5C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-373C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-373C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-5C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-5C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-373C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-373C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-373C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-5C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-373C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-373C>T
  variant of: http://identifiers.org/hgnc/2638
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.72-5C>T
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

7-99274209-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274209
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274209
    reference: chr 7
allele count: 1
allele frequency: 8.868550346760318e-6
allele num: 112758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-378T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-378T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-378T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-10T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-10T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-10T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-10T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-378T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-10T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-378T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-378T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-378T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-378T>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-99274217-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274217
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274216
    reference: chr 7
allele count: 2
allele frequency: 1.773961788863068e-5
allele num: 112742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-387delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-387delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-19delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-387delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-387delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-387delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-19delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-19delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-19delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-19delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-387delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-387delT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-387delT
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: GA
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

7-99274218-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274218
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274219
    reference: chr 7
allele count: 16
allele frequency: 1.4194464158978e-4
allele num: 112720
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-388dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-388dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-20dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-20dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-388dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-20dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-20dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-388dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-388dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-388dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-20dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-388dupA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-388dupA
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

7-99274219-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274219
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274219
    reference: chr 7
allele count: 1
allele frequency: 8.874689385871495e-6
allele num: 112680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-20A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-388A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-20A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-20A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-388A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-388A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-388A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-388A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-388A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-388A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-20A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-388A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-20A>G
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

7-99274227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274227
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274227
    reference: chr 7
allele count: 3
allele frequency: 2.660989888238425e-5
allele num: 112740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-396C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-396C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-396C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-396C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-396C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-28C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-396C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-396C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-396C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-28C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-28C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-28C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-28C>T
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

7-99274228-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274228
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274227
    reference: chr 7
allele count: 1
allele frequency: 8.870281010502412e-6
allele num: 112736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-30delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-30delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-398delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-398delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-398delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-30delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-30delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-398delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-398delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-398delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-398delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-398delG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-30delG
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: TC
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

7-99274235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274235
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274235
    reference: chr 7
allele count: 245
allele frequency: 2.173797313363974e-3
allele num: 112706
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-404G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-36G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-404G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-404G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-36G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-404G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-36G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-404G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-36G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-404G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-404G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-36G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-404G>A
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 7.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

7-99274237-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274237
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274237
    reference: chr 7
allele count: 3
allele frequency: 2.661887100495111e-5
allele num: 112702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-38G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-406G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-406G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-38G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-406G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-406G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-38G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-406G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-406G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-38G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-38G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-406G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-406G>A
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

7-99274237-CTGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274237
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274234
    reference: chr 7
allele count: 6
allele frequency: 5.323774200990222e-5
allele num: 112702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-41_164-39delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-409_172-407delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-409_169-407delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-409_169-407delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-409_72-407delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-409_172-407delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-409_129-407delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-41_72-39delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-409_142-407delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-41_72-39delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-41_172-39delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-409_72-407delTCA
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-41_-219-39delTCA
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: CTGA
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-99274244-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99274244
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99274244
    reference: chr 7
allele count: 7
allele frequency: 6.211069901155259e-5
allele num: 112702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.72-45A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.172-413A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.172-413A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.142-413A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.169-413A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.169-413A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.72-413A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.129-413A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-219-45A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.164-45A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.72-413A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.72-45A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.172-45A>G
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-99277398-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277398
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277398
    reference: chr 7
allele count: 4
allele frequency: 3.296413502109704e-5
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+51A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+51A>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

7-99277398-T-TAGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277398
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277401
    reference: chr 7
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: TAGC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+48_71+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+48_128+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+48_168+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+48_71+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+48_171+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+48_71+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+48_163+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+48_171+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+48_168+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+48_-220+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+48_71+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+48_171+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+48_141+50dupGCT
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

7-99277402-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277402
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277402
    reference: chr 7
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+47T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+47T>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13032
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

7-99277404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277404
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277404
    reference: chr 7
allele count: 2
allele frequency: 1.648125257519571e-5
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+45G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+45G>A
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

7-99277418-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277418
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277418
    reference: chr 7
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+31T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+31T>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

7-99277420-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277420
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277420
    reference: chr 7
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+29G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+29G>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/7-99277420-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277420
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277418
    reference: chr 7
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+27_-220+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+27_71+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+27_171+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+27_71+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+27_171+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+27_128+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+27_141+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+27_168+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+27_171+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+27_163+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+27_71+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+27_168+28delTT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+27_71+28delTT
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: CAA
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

7-99277420-CAAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277420
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277416
    reference: chr 7
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19357
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10406
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16508
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8642
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CAAAG
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

7-99277432-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277432
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277432
    reference: chr 7
allele count: 4
allele frequency: 3.295218637756615e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+17A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+17A>G
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

7-99277436-GACAGTTACTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277436
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277426
    reference: chr 7
allele count: 21
allele frequency: 1.729932779754844e-4
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.71+3_71+12delGAGTAACTGT
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: GACAGTTACTC
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-99277442-TACTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277442
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277438
    reference: chr 7
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+3_-220+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+3_141+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+3_168+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+3_71+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+3_71+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+3_171+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+3_163+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+3_171+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+3_128+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+3_171+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+3_71+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+3_71+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+3_168+6delGAGT
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.71+3_71+6delGAGT
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: TACTC
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-99277444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277444
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277444
    reference: chr 7
allele count: 137
allele frequency: 1.128686768825177e-3
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+5G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+5G>A
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: c.71+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

7-99277446-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277446
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277446
    reference: chr 7
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.171+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.71+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.171+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.163+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.71+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.128+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.71+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.141+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.168+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.71+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-220+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.168+3G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.171+3G>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.71+3G>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

7-99277451-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277451
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277451
    reference: chr 7
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.169T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.126T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.169T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.69T>A
  hgvsp: ENSP00000401269.1:p.Tyr23Ter
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.69T>A
  hgvsp: ENSP00000222982.4:p.Tyr23Ter
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.166T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.69T>A
  hgvsp: ENSP00000415399.1:p.Tyr23Ter
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.166T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-222T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.161T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.169T>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.69T>A
  hgvsp: ENSP00000343074.2:p.Tyr23Ter
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.139T>A
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr23Ter
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-99277495-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277495
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277495
    reference: chr 7
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.122G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.25G>T
  hgvsp: ENSP00000343074.2:p.Val9Leu
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.95G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.125G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.117G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.25G>T
  hgvsp: ENSP00000415399.1:p.Val9Leu
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.25G>T
  hgvsp: ENSP00000401269.1:p.Val9Leu
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.82G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.25G>T
  hgvsp: ENSP00000222982.4:p.Val9Leu
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.125G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.125G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.122G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-266G>T
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val9Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

7-99277496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277496
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277496
    reference: chr 7
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.124G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.94G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.124G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.121G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-267G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.24G>A
  hgvsp: ENST00000222982.4:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.124G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.24G>A
  hgvsp: ENST00000456417.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.121G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.116G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.81G>A
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.24G>A
  hgvsp: ENST00000439761.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.24G>A
  hgvsp: ENST00000339843.2:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala8Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

7-99277497-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277497
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277497
    reference: chr 7
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.123C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.123C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.115C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.23C>T
  hgvsp: ENSP00000415399.1:p.Ala8Val
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.23C>T
  hgvsp: ENSP00000343074.2:p.Ala8Val
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.120C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.23C>T
  hgvsp: ENSP00000401269.1:p.Ala8Val
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.93C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-268C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.120C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.23C>T
  hgvsp: ENSP00000222982.4:p.Ala8Val
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.123C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.80C>T
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala8Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

7-99277505-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277505
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277504
    reference: chr 7
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.84delC
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.71delC
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.14delC
  hgvsp: ENSP00000343074.2:p.Pro5GlnfsTer20
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.14delC
  hgvsp: ENSP00000401269.1:p.Pro5GlnfsTer85
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.111delC
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-277delC
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.14delC
  hgvsp: ENSP00000222982.4:p.Pro5GlnfsTer85
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.106delC
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.114delC
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.111delC
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.14delC
  hgvsp: ENSP00000415399.1:p.Pro5GlnfsTer20
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.114delC
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.114delC
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro5GlnfsTer85
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: TG
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

7-99277517-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277517
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277517
    reference: chr 7
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.100G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.103G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.60G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-288G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.3G>C
  hgvsp: ENSP00000415399.1:p.Met1?
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.3G>C
  hgvsp: ENSP00000401269.1:p.Met1?
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.3G>C
  hgvsp: ENSP00000343074.2:p.Met1?
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.3G>C
  hgvsp: ENSP00000222982.4:p.Met1?
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.100G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.73G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.103G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.95G>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.103G>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-99277520-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277520
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277520
    reference: chr 7
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.97G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-291G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.57G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-1G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.92G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.100G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-1G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.100G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-1G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.70G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-1G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.97G>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.100G>T
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

7-99277521-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277521
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277521
    reference: chr 7
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-292C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.56C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.99C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-2C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-2C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.96C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.91C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.99C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.99C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.69C>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.96C>T
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

7-99277528-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277528
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277528
    reference: chr 7
allele count: 9
allele frequency: 7.41534151767323e-5
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.49A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.89A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-299A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.92A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.62A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.92A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-9A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-9A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.84A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-9A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-9A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.92A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.89A>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10132
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

7-99277529-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277529
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277526
    reference: chr 7
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-13_-11delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-13_-11delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.45_47delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.88_90delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-13_-11delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.80_82delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.85_87delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.88_90delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.85_87delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.88_90delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-303_-301delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.58_60delAAG
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-13_-11delAAG
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: CCTT
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

7-99277534-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277534
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277534
    reference: chr 7
allele count: 92
allele frequency: 7.580751483190507e-4
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-15A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.83A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.86A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.86A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-15A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.83A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-305A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.43A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-15A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.56A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-15A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.78A>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.86A>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

7-99277538-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277538
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277538
    reference: chr 7
allele count: 12
allele frequency: 9.888914526815439e-5
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.79T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-309T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.82T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-19T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-19T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.79T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.82T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.82T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-19T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-19T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.39T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.52T>C
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.74T>C
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

7-99277543-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277543
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277543
    reference: chr 7
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.77C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.69C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.47C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-24C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.77C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.74C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.77C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-24C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-24C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-24C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-314C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.34C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.74C>G
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

7-99277545-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277545
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277545
    reference: chr 7
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-26A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.72A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-26A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.75A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.32A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.45A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.67A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.72A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.75A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.75A>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-316A>G
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

7-99277548-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277548
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277548
    reference: chr 7
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-29C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.72C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.72C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-29C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.69C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.42C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.69C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-319C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.64C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.72C>G
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.29C>G
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

7-99277570-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99277570
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99277570
    reference: chr 7
allele count: 1
allele frequency: 8.261049153242462e-6
allele num: 121050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000469622
  gene symbol: CYP3A5
  hgvsc: ENST00000469622.1:n.47A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000222982
  ensembl transcript: ENST00000222982
  gene symbol: CYP3A5
  hgvsc: ENST00000222982.4:c.-51A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000343074
  ensembl transcript: ENST00000339843
  gene symbol: CYP3A5
  hgvsc: ENST00000339843.2:c.-51A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000461920
  gene symbol: CYP3A5
  hgvsc: ENST00000461920.1:n.42A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463907
  gene symbol: CYP3A5
  hgvsc: ENST00000463907.1:n.50A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000415399
  ensembl transcript: ENST00000456417
  gene symbol: CYP3A5
  hgvsc: ENST00000456417.1:c.-51A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000466061
  gene symbol: CYP3A5
  hgvsc: ENST00000466061.1:n.50A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000463364
  gene symbol: CYP3A5
  hgvsc: ENST00000463364.1:n.20A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000481825
  gene symbol: CYP3A5
  hgvsc: ENST00000481825.1:n.50A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000480723
  gene symbol: CYP3A5
  hgvsc: ENST00000480723.1:n.7A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000342969
  ensembl transcript: ENST00000343703
  gene symbol: CYP3A5
  hgvsc: ENST00000343703.5:c.-341A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106258
  ensembl transcript: ENST00000489231
  gene symbol: CYP3A5
  hgvsc: ENST00000489231.1:n.47A>T
  variant of: http://identifiers.org/hgnc/2638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106258
  ensembl protein: ENSP00000401269
  ensembl transcript: ENST00000439761
  gene symbol: CYP3A5
  hgvsc: ENST00000439761.1:c.-51A>T
  variant of: http://identifiers.org/hgnc/2638
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

7-99282810-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282810
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282810
    reference: chr 7
allele count: 1
allele frequency: 8.25559316436886e-6
allele num: 121130
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44702
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8610
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 904
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.500645277469312e-5
  allele num: 66638
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11560
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

7-99282813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282813
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282813
    reference: chr 7
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44702
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6608
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 8.652015919709292e-5
  allele num: 11558
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8612
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10298
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

7-99282813-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282813
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282813
    reference: chr 7
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6608
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population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.50073536032656e-5
  allele num: 66634
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population: Other
  type: Population
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  allele num: 904
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population: South Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 16504
  num of homozygotes: 0
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

7-99282816-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282816
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282816
    reference: chr 7
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8612
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population: African
  type: Population
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  allele num: 10300
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population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.500690317546071e-5
  allele num: 66636
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population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6608
  num of homozygotes: 0
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-99282824-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282824
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282824
    reference: chr 7
allele count: 2
allele frequency: 1.651527663088357e-5
allele num: 121100
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 6608
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population: European (Non-Finnish)
  type: Population
  allele count: 0
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  allele num: 66630
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population: Other
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population: South Asian
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  allele num: 16504
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population: Latino
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
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site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

7-99282828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282828
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282828
    reference: chr 7
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
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  allele num: 11554
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population: African
  type: Population
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  allele frequency: 9.721952167995334e-5
  allele num: 10286
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population: European (Non-Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 66616
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population: Other
  type: Population
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  allele num: 904
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population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

7-99282831-GTCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282831
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282828
    reference: chr 7
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44696
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11552
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6608
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66614
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 904
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
reference allele: GTCC
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

7-99282837-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282837
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282837
    reference: chr 7
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.501456412720339e-5
  allele num: 66602
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11550
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 904
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8594
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

7-99282842-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282842
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282842
    reference: chr 7
allele count: 5
allele frequency: 4.132026511082095e-5
allele num: 121006
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 253
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 6195
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1362
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 68
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3863
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2693
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 904
  num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 1.948937828883259e-4
  allele num: 10262
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11550
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6608
  num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-99282843-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282843
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282843
    reference: chr 7
allele count: 2
allele frequency: 1.653029175964956e-5
allele num: 120990
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3279
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 323
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11548
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6608
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8590
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 904
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

7-99282853-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282853
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282853
    reference: chr 7
allele count: 1232
allele frequency: 1.019344376230743e-2
allele num: 120862
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 6.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 6747
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 7.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 9.75e1
  variant carriers: 658
genotype depth: GenotypeDepth
  all individuals: 2661
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  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
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  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 40
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6194
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  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 45
genotype depth: GenotypeDepth
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  variant carriers: 24
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
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  variant carriers: 17
genotype depth: GenotypeDepth
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  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2003
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 44817
  bin: 9.75e1
  variant carriers: 1157
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1015
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genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 68
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6604
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8588
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population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.063545961678389e-5
  allele num: 16492
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 59
  allele frequency: 5.113537874848327e-3
  allele num: 11538
  num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

7-99282854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282854
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282854
    reference: chr 7
allele count: 10
allele frequency: 8.276227364518158e-5
allele num: 120828
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
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genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 902
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population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.005981903988938e-5
  allele num: 66534
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 3
  allele frequency: 2.600554785020804e-4
  allele num: 11536
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 9.827044025157233e-5
  allele num: 10176
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

7-99282856-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282856
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282856
    reference: chr 7
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 118
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genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2082
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8582
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population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16488
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population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.503171692270691e-5
  allele num: 66526
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population: Other
  type: Population
  allele count: 0
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  allele num: 902
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population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

7-99282864-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282864
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282864
    reference: chr 7
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
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  allele num: 11530
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population: East Asian
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  allele count: 0
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  allele num: 8580
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population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 6602
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population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10090
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population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

7-99282875-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282875
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282875
    reference: chr 7
allele count: 1
allele frequency: 8.294212298657997e-6
allele num: 120566
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
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  allele num: 900
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population: European (Non-Finnish)
  type: Population
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  allele num: 66454
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population: South Asian
  type: Population
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  allele num: 16486
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population: European (Finnish)
  type: Population
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  allele num: 6600
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population: Latino
population: East Asian
population: African
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

7-99282884-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282884
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282884
    reference: chr 7
allele count: 1
allele frequency: 8.304544246611745e-6
allele num: 120416
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16482
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11524
  num of homozygotes: 0
population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 900
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population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.16795141322121e-4
  allele num: 8562
  num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

7-99282891-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282891
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282891
    reference: chr 7
allele count: 1
allele frequency: 8.311861025683651e-6
allele num: 120310
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
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genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 409
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16482
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population: African
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  allele count: 1
  allele frequency: 1.00928542591845e-4
  allele num: 9908
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population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66346
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population: Latino
  type: Population
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  allele num: 11520
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

7-99282894-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282894
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282894
    reference: chr 7
allele count: 1
allele frequency: 8.320298199487469e-6
allele num: 120188
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9852
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population: Latino
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population: South Asian
  type: Population
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  allele num: 16480
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population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6600
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population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-99282897-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282897
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282897
    reference: chr 7
allele count: 1
allele frequency: 8.320713584396998e-6
allele num: 120182
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 11510
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population: Other
  type: Population
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  allele num: 900
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population: European (Finnish)
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population: East Asian
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  allele num: 8548
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population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

7-99282897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282897
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282897
    reference: chr 7
allele count: 3
allele frequency: 2.496214075319099e-5
allele num: 120182
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: South Asian
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population: Latino
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population: Other
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population: East Asian
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population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
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site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
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site quality: ClippingRankSum

7-99282900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282900
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282900
    reference: chr 7
allele count: 7
allele frequency: 5.827505827505828e-5
allele num: 120120
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8540
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population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.509251713000694e-5
  allele num: 66258
  num of homozygotes: 0
population: African
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  allele num: 9840
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population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6596
  num of homozygotes: 0
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

7-99282906-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99282906
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99282906
    reference: chr 7
allele count: 1
allele frequency: 8.333194446759221e-6
allele num: 120002
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8528
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9812
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66190
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.068697657482704e-5
  allele num: 16478
  num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

7-99293323-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99293323
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99293323
    reference: chr 7
allele count: 1
allele frequency: 9.543077451616597e-6
allele num: 104788
alternate allele: C
canonical: false
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10161
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 57342
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
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  allele num: 6290
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6934
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9804
  num of homozygotes: 0
population: South Asian
population: African
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

7-99293328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99293328
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99293328
    reference: chr 7
allele count: 1
allele frequency: 9.52943642912958e-6
allele num: 104938
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14734
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8920
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 802
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6284
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

GenotypeDepth
all individuals: 1763
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4539
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 928
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2397
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3446
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6454
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41368
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.760873393203029e-4
allele num: 11358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61428
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

FS
type: SiteQuality
SIO_000300: 2.094e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

DP
type: SiteQuality
SIO_000300: 3.240467e6

GenotypeDepth
all individuals: 1763
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2791
bin: 2.75e1
variant carriers: 0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3445
bin: 6.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.767532721234616e-5
allele num: 61428
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.627975124540097e-5
allele num: 61426
num of homozygotes: 0

South Asian
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allele count: 10
allele frequency: 6.165988407941793e-4
allele num: 16218
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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East Asian
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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MQRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.165988407941794e-5
allele num: 16218
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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VQSLOD
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MQ
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DP
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.165988407941794e-5
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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VQSLOD
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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European (Finnish)
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QD
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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Other
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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MQ
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DP
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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BaseQRankSum
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QD
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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African
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Other
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East Asian
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Latino
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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allele frequency: 3.257116800208455e-5
allele num: 61404
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MQ
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SIO_000300: 5.998e1

BaseQRankSum
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FS
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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Other
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South Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
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South Asian
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Other
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European (Non-Finnish)
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allele num: 61416
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Latino
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num of homozygotes: 0

East Asian
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ReadPosRankSum
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QD
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MQ
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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InbreedingCoeff
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MQ
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QD
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BaseQRankSum
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VQSLOD
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DP
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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East Asian
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African
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European (Finnish)
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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FS
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VQSLOD
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QD
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MQ
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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South Asian
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VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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MQ
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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African
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Other
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Latino
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European (Non-Finnish)
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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East Asian
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South Asian
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African
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European (Finnish)
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66710
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Other
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African
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European (Finnish)
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East Asian
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Latino
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South Asian
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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FS
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MQ
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 2.34e-1

MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 5.923e1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.82e0

InbreedingCoeff
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SIO_000300: 2.0e-4

ReadPosRankSum
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SIO_000300: 2.17e0

FS
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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DP
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SIO_000300: 2.591232e6

QD
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SIO_000300: 1.465e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.765e1

VQSLOD
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SIO_000300: 8.080000000000001e-1

ReadPosRankSum
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MQRankSum
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FS
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DP
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QD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -8.799999999999999e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ReadPosRankSum
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SIO_000300: 2.17e0

BaseQRankSum
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QD
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MQ
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SIO_000300: 5.765e1

InbreedingCoeff
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SIO_000300: 2.0e-4

DP
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SIO_000300: 2.591232e6

MQRankSum
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SIO_000300: -9.1e-2

FS
type: SiteQuality
SIO_000300: 6.92e0

ClippingRankSum
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SIO_000300: -8.799999999999999e-2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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ClippingRankSum
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SIO_000300: -1.55e-1

MQ
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SIO_000300: 5.923e1

InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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QD
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MQRankSum
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SIO_000300: -4.96e-1

DP
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SIO_000300: 2.591599e6

BaseQRankSum
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SIO_000300: 3.12e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.609840476648087e-4
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.994485073732166e-5
allele num: 66728
num of homozygotes: 0

QD
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -3.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

African
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Latino
type: Population
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num of homozygotes: 0

Other
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European (Finnish)
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South Asian
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East Asian
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 129
allele frequency: 1.933221436278624e-3
allele num: 66728
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.885170225043277e-4
allele num: 10398
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Other
type: Population
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
type: Population
allele count: 4
allele frequency: 3.456619426201175e-4
allele num: 11572
num of homozygotes: 0

VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
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MQ
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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African
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European (Non-Finnish)
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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MQ
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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QD
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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African
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East Asian
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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Latino
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European (Finnish)
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DP
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MQ
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FS
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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SIO_000300: 1.21e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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BaseQRankSum
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SIO_000300: 8.16e0

VQSLOD
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DP
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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SIO_000300: -3.06e-1

MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

South Asian
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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FS
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SIO_000300: 1.565e0

DP
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ReadPosRankSum
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SIO_000300: 2.06e-1

MQRankSum
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MQ
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SIO_000300: 5.96e1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 4.844961240310077e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
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SIO_000300: 2.587971e6

MQ
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SIO_000300: 5.611e1

MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
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allele count: 1
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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MQ
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 6.914433880726015e-4
allele num: 11570
num of homozygotes: 0

East Asian
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South Asian
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African
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allele frequency: 7.880069190851432e-3
allele num: 10406
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European (Finnish)
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European (Non-Finnish)
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Other
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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East Asian
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allele frequency: 8.094357076780758e-4
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European (Finnish)
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Other
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South Asian
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QD
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MQ
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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BaseQRankSum
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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Other
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East Asian
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South Asian
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European (Finnish)
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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allele num: 10404
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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African
type: Population
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allele num: 10396
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East Asian
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allele frequency: 0.0e0
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Latino
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South Asian
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MQRankSum
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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SIO_000300: 8.0e-3

VQSLOD
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ReadPosRankSum
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MQ
type: SiteQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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Other
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allele num: 904
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European (Non-Finnish)
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South Asian
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DP
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ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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Latino
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African
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East Asian
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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QD
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Latino
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South Asian
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Other
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FS
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SIO_000300: 7.3e-1

ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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Latino
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African
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East Asian
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BaseQRankSum
type: SiteQuality
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DP
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MQRankSum
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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East Asian
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South Asian
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European (Finnish)
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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FS
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QD
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East Asian
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South Asian
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African
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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QD
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VQSLOD
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South Asian
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African
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European (Finnish)
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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DP
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South Asian
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East Asian
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European (Non-Finnish)
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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European (Non-Finnish)
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South Asian
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African
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MQ
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DP
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

Other
type: Population
allele count: 7
allele frequency: 7.743362831858407e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1141
allele frequency: 1.118846832712296e-1
allele num: 10198
num of homozygotes: 68

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.606961435570651e-4
allele num: 66538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 3.508186e6

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.01e-2

QD
type: SiteQuality
SIO_000300: 1.362e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.425712553062462e-4
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.429e1

VQSLOD
type: SiteQuality
SIO_000300: 9.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 3.446635e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.917e0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 4.158e0

QD
type: SiteQuality
SIO_000300: 1.18e1

DP
type: SiteQuality
SIO_000300: 3.44527e6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503714174009804e-5
allele num: 66502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.16e-1

FS
type: SiteQuality
SIO_000300: 2.774e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.37e-1

DP
type: SiteQuality
SIO_000300: 3.441921e6

QD
type: SiteQuality
SIO_000300: 1.434e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.436496e6

QD
type: SiteQuality
SIO_000300: 1.336e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 6.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.675e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.016e0

QD
type: SiteQuality
SIO_000300: 1.323e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.17e0

FS
type: SiteQuality
SIO_000300: 1.122e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 3.430872e6

MQ
type: SiteQuality
SIO_000300: 5.889e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

DP
type: SiteQuality
SIO_000300: 3.426999e6

FS
type: SiteQuality
SIO_000300: 4.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

QD
type: SiteQuality
SIO_000300: 1.76e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 7.647e0

QD
type: SiteQuality
SIO_000300: 1.227e1

DP
type: SiteQuality
SIO_000300: 3.422188e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66296
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.015228426395939e-4
allele num: 9850
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e0

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

FS
type: SiteQuality
SIO_000300: 3.873e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 3.421817e6

QD
type: SiteQuality
SIO_000300: 1.481e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66296
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.045685279187817e-4
allele num: 9850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

FS
type: SiteQuality
SIO_000300: 3.873e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

QD
type: SiteQuality
SIO_000300: 1.481e1

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

DP
type: SiteQuality
SIO_000300: 3.421817e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.033980582524272e-4
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.324e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

DP
type: SiteQuality
SIO_000300: 3.419809e6

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.683e0

FS
type: SiteQuality
SIO_000300: 8.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

DP
type: SiteQuality
SIO_000300: 3.416401e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.65e-1

FS
type: SiteQuality
SIO_000300: 1.228e0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.453e1

South Asian
type: Population
allele count: 1
allele frequency: 6.802721088435374e-5
allele num: 14700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.428521e6

VQSLOD
type: SiteQuality
SIO_000300: -6.043e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.181e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.182e1

FS
type: SiteQuality
SIO_000300: 1.4027e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.94e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.741735465217543e-5
allele num: 57414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.82e0

DP
type: SiteQuality
SIO_000300: 1.447908e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.951e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1