6-108066397-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108066397
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108066397
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 13536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.314-50C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.401-50C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.314-50C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.2014C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.488-50C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.595-50C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.506-50C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.401-50C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16330
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4619
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26010
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

6-108067850-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067850
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067850
    reference: chr 6
allele count: 1
allele frequency: 8.626192571122958e-6
allele num: 115926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.313+43C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.400+43C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.505+43C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.487+43C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.594+43C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.313+43C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.400+43C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.561C>G
  variant of: http://identifiers.org/hgnc/21397
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

6-108067862-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067862
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067862
    reference: chr 6
allele count: 1
allele frequency: 8.570449091532397e-6
allele num: 116680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.313+31C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.400+31C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.313+31C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.594+31C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.549C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.505+31C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.400+31C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.487+31C>G
  variant of: http://identifiers.org/hgnc/21397
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6621
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

6-108067864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067864
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067864
    reference: chr 6
allele count: 1
allele frequency: 8.558859275235797e-6
allele num: 116838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.313+29G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.313+29G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.547G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.487+29G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.400+29G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.400+29G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.594+29G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.505+29G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11723
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

6-108067871-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067871
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067871
    reference: chr 6
allele count: 1
allele frequency: 8.515566455480618e-6
allele num: 117432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.540A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.313+22A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.594+22A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.505+22A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.487+22A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.313+22A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.400+22A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.400+22A>G
  variant of: http://identifiers.org/hgnc/21397
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6715
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

6-108067871-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067871
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067870
    reference: chr 6
allele count: 1
allele frequency: 8.515566455480618e-6
allele num: 117432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.313+21delC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.594+21delC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.400+21delC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.487+21delC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.505+21delC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.313+21delC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.539delC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.400+21delC
  variant of: http://identifiers.org/hgnc/21397
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6715
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: TG
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

6-108067878-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067878
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067878
    reference: chr 6
allele count: 1
allele frequency: 8.463530646444471e-6
allele num: 118154
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.487+15A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.313+15A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.533A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.594+15A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.400+15A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.505+15A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.400+15A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.313+15A>G
  variant of: http://identifiers.org/hgnc/21397
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14627
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

6-108067907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067907
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067907
    reference: chr 6
allele count: 171
allele frequency: 1.421730020951811e-3
allele num: 120276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.299G>A
  hgvsp: ENSP00000358018.2:p.Gly100Asp
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.580G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.473G>A
  hgvsp: ENSP00000358016.3:p.Gly158Asp
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.504G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.386G>A
  hgvsp: ENSP00000404688.1:p.Gly129Asp
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.299G>A
  hgvsp: ENSP00000395589.1:p.Gly100Asp
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.386G>A
  hgvsp: ENSP00000358017.3:p.Gly129Asp
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.491G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19533
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 9.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly158Asp
num of homozygotes: 1
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

6-108067915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067915
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067915
    reference: chr 6
allele count: 922
allele frequency: 7.651579279324138e-3
allele num: 120498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.378C>T
  hgvsp: ENST00000369021.3:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.291C>T
  hgvsp: ENST00000426221.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.572C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.378C>T
  hgvsp: ENST00000440927.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.465C>T
  hgvsp: ENST00000369020.3:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.291C>T
  hgvsp: ENST00000369022.2:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.496C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.483C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12104
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 19700
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 9.75e1
  variant carriers: 782
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly155Gly
num of homozygotes: 22
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

6-108067917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067917
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067917
    reference: chr 6
allele count: 4
allele frequency: 3.318235362434257e-5
allele num: 120546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.289G>A
  hgvsp: ENSP00000358018.2:p.Gly97Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.494G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.570G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.463G>A
  hgvsp: ENSP00000358016.3:p.Gly155Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.481G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.376G>A
  hgvsp: ENSP00000404688.1:p.Gly126Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.289G>A
  hgvsp: ENSP00000395589.1:p.Gly97Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.376G>A
  hgvsp: ENSP00000358017.3:p.Gly126Ser
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly155Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

6-108067926-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067926
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067926
    reference: chr 6
allele count: 2
allele frequency: 1.657247974014352e-5
allele num: 120682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.561G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.367G>A
  hgvsp: ENSP00000358017.3:p.Val123Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.454G>A
  hgvsp: ENSP00000358016.3:p.Val152Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.367G>A
  hgvsp: ENSP00000404688.1:p.Val123Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.485G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.280G>A
  hgvsp: ENSP00000358018.2:p.Val94Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.280G>A
  hgvsp: ENSP00000395589.1:p.Val94Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.472G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val152Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

6-108067928-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067928
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067928
    reference: chr 6
allele count: 7
allele frequency: 5.798253897254941e-5
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.278T>A
  hgvsp: ENSP00000358018.2:p.Leu93Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.278T>A
  hgvsp: ENSP00000395589.1:p.Leu93Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.365T>A
  hgvsp: ENSP00000404688.1:p.Leu122Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.483T>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.452T>A
  hgvsp: ENSP00000358016.3:p.Leu151Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.365T>A
  hgvsp: ENSP00000358017.3:p.Leu122Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.559T>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.470T>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13869
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu151Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

6-108067931-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067931
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067931
    reference: chr 6
allele count: 2
allele frequency: 1.656177542232527e-5
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.362C>G
  hgvsp: ENSP00000404688.1:p.Ser121Cys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.275C>G
  hgvsp: ENSP00000358018.2:p.Ser92Cys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.480C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.275C>G
  hgvsp: ENSP00000395589.1:p.Ser92Cys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.362C>G
  hgvsp: ENSP00000358017.3:p.Ser121Cys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.556C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.467C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.449C>G
  hgvsp: ENSP00000358016.3:p.Ser150Cys
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser150Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-108067933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067933
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067933
    reference: chr 6
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.478C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.360C>T
  hgvsp: ENST00000440927.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.273C>T
  hgvsp: ENST00000426221.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.273C>T
  hgvsp: ENST00000369022.2:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.360C>T
  hgvsp: ENST00000369021.3:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.465C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.554C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.447C>T
  hgvsp: ENST00000369020.3:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32590
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe149Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

6-108067936-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067936
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067936
    reference: chr 6
allele count: 243
allele frequency: 2.011922503725783e-3
allele num: 120780
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.444C>A
  hgvsp: ENST00000369020.3:c.444C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.475C>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.462C>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.270C>A
  hgvsp: ENST00000426221.1:c.270C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.357C>A
  hgvsp: ENST00000440927.1:c.357C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.270C>A
  hgvsp: ENST00000369022.2:c.270C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.357C>A
  hgvsp: ENST00000369021.3:c.357C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.551C>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20168
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13971
  bin: 9.75e1
  variant carriers: 238
hgvs: p.Val148Val
num of homozygotes: 4
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-108067937-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067937
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067937
    reference: chr 6
allele count: 2
allele frequency: 1.655903295247558e-5
allele num: 120780
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.474T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.269T>C
  hgvsp: ENSP00000395589.1:p.Val90Ala
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.356T>C
  hgvsp: ENSP00000404688.1:p.Val119Ala
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.550T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.443T>C
  hgvsp: ENSP00000358016.3:p.Val148Ala
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.269T>C
  hgvsp: ENSP00000358018.2:p.Val90Ala
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.461T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.356T>C
  hgvsp: ENSP00000358017.3:p.Val119Ala
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val148Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-108067945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067945
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067945
    reference: chr 6
allele count: 2
allele frequency: 1.655629139072848e-5
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.435G>A
  hgvsp: ENST00000369020.3:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.542G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.348G>A
  hgvsp: ENST00000440927.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.261G>A
  hgvsp: ENST00000369022.2:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.453G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.466G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.261G>A
  hgvsp: ENST00000426221.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.348G>A
  hgvsp: ENST00000369021.3:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12392
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln145Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD

6-108067947-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067947
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067947
    reference: chr 6
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.346C>G
  hgvsp: ENSP00000404688.1:p.Gln116Glu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.259C>G
  hgvsp: ENSP00000358018.2:p.Gln87Glu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.451C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.259C>G
  hgvsp: ENSP00000395589.1:p.Gln87Glu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.433C>G
  hgvsp: ENSP00000358016.3:p.Gln145Glu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.540C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.464C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.346C>G
  hgvsp: ENSP00000358017.3:p.Gln116Glu
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32425
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln145Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-108067953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067953
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067953
    reference: chr 6
allele count: 2
allele frequency: 1.655930715858849e-5
allele num: 120778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.340C>T
  hgvsp: ENSP00000404688.1:p.His114Tyr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.534C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.340C>T
  hgvsp: ENSP00000358017.3:p.His114Tyr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.427C>T
  hgvsp: ENSP00000358016.3:p.His143Tyr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.253C>T
  hgvsp: ENSP00000358018.2:p.His85Tyr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.253C>T
  hgvsp: ENSP00000395589.1:p.His85Tyr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.445C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.458C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32303
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His143Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

6-108067954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067954
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067954
    reference: chr 6
allele count: 2
allele frequency: 1.656012983141788e-5
allele num: 120772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.457C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.426C>T
  hgvsp: ENST00000369020.3:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.444C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.339C>T
  hgvsp: ENST00000440927.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.252C>T
  hgvsp: ENST00000426221.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.339C>T
  hgvsp: ENST00000369021.3:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.252C>T
  hgvsp: ENST00000369022.2:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.533C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala142Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-108067956-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067956
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067956
    reference: chr 6
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.250G>A
  hgvsp: ENSP00000395589.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.337G>A
  hgvsp: ENSP00000404688.1:p.Ala113Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.531G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.442G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.250G>A
  hgvsp: ENSP00000358018.2:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.455G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.337G>A
  hgvsp: ENSP00000358017.3:p.Ala113Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.424G>A
  hgvsp: ENSP00000358016.3:p.Ala142Thr
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7269
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala142Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-108067957-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067957
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067957
    reference: chr 6
allele count: 6
allele frequency: 4.969355640218652e-5
allele num: 120740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.530C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.441C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.249C>T
  hgvsp: ENST00000426221.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.336C>T
  hgvsp: ENST00000440927.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.249C>T
  hgvsp: ENST00000369022.2:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.423C>T
  hgvsp: ENST00000369020.3:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.454C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.336C>T
  hgvsp: ENST00000369021.3:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13778
  bin: 9.75e1
  variant carriers: 6
hgvs: p.Cys141Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

6-108067962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067962
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067962
    reference: chr 6
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.244G>A
  hgvsp: ENSP00000358018.2:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.449G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.331G>A
  hgvsp: ENSP00000404688.1:p.Asp111Asn
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.418G>A
  hgvsp: ENSP00000358016.3:p.Asp140Asn
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.436G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.244G>A
  hgvsp: ENSP00000395589.1:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.525G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.331G>A
  hgvsp: ENSP00000358017.3:p.Asp111Asn
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13773
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp140Asn
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

6-108067980-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067980
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067980
    reference: chr 6
allele count: 1
allele frequency: 8.326256015719971e-6
allele num: 120102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.418G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.431G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.226G>A
  hgvsp: ENSP00000395589.1:p.Ala76Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.400G>A
  hgvsp: ENSP00000358016.3:p.Ala134Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.507G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.226G>A
  hgvsp: ENSP00000358018.2:p.Ala76Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.313G>A
  hgvsp: ENSP00000358017.3:p.Ala105Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.313G>A
  hgvsp: ENSP00000404688.1:p.Ala105Thr
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala134Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/6-108067984-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067984
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067984
    reference: chr 6
allele count: 1
allele frequency: 8.343902276216541e-6
allele num: 119848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.222G>T
  hgvsp: ENSP00000395589.1:p.Gln74His
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.503G>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.309G>T
  hgvsp: ENSP00000404688.1:p.Gln103His
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.309G>T
  hgvsp: ENSP00000358017.3:p.Gln103His
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.396G>T
  hgvsp: ENSP00000358016.3:p.Gln132His
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.222G>T
  hgvsp: ENSP00000358018.2:p.Gln74His
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.414G>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.427G>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13757
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30048
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln132His
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

6-108067988-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067988
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067988
    reference: chr 6
allele count: 1
allele frequency: 8.380262805041566e-6
allele num: 119328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.423T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.410T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.218T>C
  hgvsp: ENSP00000395589.1:p.Leu73Pro
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.392T>C
  hgvsp: ENSP00000358016.3:p.Leu131Pro
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.499T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.218T>C
  hgvsp: ENSP00000358018.2:p.Leu73Pro
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.305T>C
  hgvsp: ENSP00000358017.3:p.Leu102Pro
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.305T>C
  hgvsp: ENSP00000404688.1:p.Leu102Pro
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6558
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu131Pro
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

6-108067990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067990
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067990
    reference: chr 6
allele count: 1
allele frequency: 8.330834083108401e-6
allele num: 120036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.216G>A
  hgvsp: ENST00000369022.2:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.303G>A
  hgvsp: ENST00000369021.3:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.216G>A
  hgvsp: ENST00000426221.1:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.303G>A
  hgvsp: ENST00000440927.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.497G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.408G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.421G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.390G>A
  hgvsp: ENST00000369020.3:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val130Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-108067991-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067991
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067991
    reference: chr 6
allele count: 15
allele frequency: 1.295113106544638e-4
allele num: 115820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.420T>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.302T>G
  hgvsp: ENSP00000358017.3:p.Val101Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.496T>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.302T>G
  hgvsp: ENSP00000404688.1:p.Val101Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.215T>G
  hgvsp: ENSP00000358018.2:p.Val72Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.215T>G
  hgvsp: ENSP00000395589.1:p.Val72Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.389T>G
  hgvsp: ENSP00000358016.3:p.Val130Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.407T>G
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val130Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

6-108067999-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108067999
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108067999
    reference: chr 6
allele count: 2
allele frequency: 1.656397005234214e-5
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.294A>T
  hgvsp: ENST00000369021.3:c.294A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.412A>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.488A>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.207A>T
  hgvsp: ENST00000369022.2:c.207A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.381A>T
  hgvsp: ENST00000369020.3:c.381A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.399A>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.207A>T
  hgvsp: ENST00000426221.1:c.207A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.294A>T
  hgvsp: ENST00000440927.1:c.294A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14387
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro127Pro
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

6-108068002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068002
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068002
    reference: chr 6
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.291G>A
  hgvsp: ENST00000369021.3:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.378G>A
  hgvsp: ENST00000369020.3:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.485G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.409G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.204G>A
  hgvsp: ENST00000426221.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.291G>A
  hgvsp: ENST00000440927.1:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.204G>A
  hgvsp: ENST00000369022.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.396G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg126Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD

6-108068003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068003
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068003
    reference: chr 6
allele count: 18491
allele frequency: 1.529825432282618e-1
allele num: 120870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.484G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.395G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.290G>A
  hgvsp: ENSP00000404688.1:p.Arg97Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.377G>A
  hgvsp: ENSP00000358016.3:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.203G>A
  hgvsp: ENSP00000395589.1:p.Arg68Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.408G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.203G>A
  hgvsp: ENSP00000358018.2:p.Arg68Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.290G>A
  hgvsp: ENSP00000358017.3:p.Arg97Gln
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.75e1
  variant carriers: 523
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.25e1
  variant carriers: 586
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.75e1
  variant carriers: 786
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 8.75e1
  variant carriers: 961
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.25e1
  variant carriers: 971
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 2.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 12132
  bin: 3.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 445
genotype depth: GenotypeDepth
  all individuals: 20602
  bin: 2.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.25e1
  variant carriers: 705
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.75e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.25e1
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 9.75e1
  variant carriers: 8634
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 8.25e1
  variant carriers: 897
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 645
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17802
  bin: 9.75e1
  variant carriers: 16777
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 4
hgvs: p.Arg126Gln
num of homozygotes: 1629
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

6-108068004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068004
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068004
    reference: chr 6
allele count: 4
allele frequency: 3.310600542938489e-5
allele num: 120824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.289C>T
  hgvsp: ENSP00000358017.3:p.Arg97Trp
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.202C>T
  hgvsp: ENSP00000395589.1:p.Arg68Trp
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.394C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.289C>T
  hgvsp: ENSP00000404688.1:p.Arg97Trp
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.202C>T
  hgvsp: ENSP00000358018.2:p.Arg68Trp
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.407C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.483C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.376C>T
  hgvsp: ENSP00000358016.3:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16483
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg126Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

6-108068008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068008
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068008
    reference: chr 6
allele count: 5
allele frequency: 4.137360364087712e-5
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.285C>T
  hgvsp: ENST00000440927.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.390C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.198C>T
  hgvsp: ENST00000369022.2:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.198C>T
  hgvsp: ENST00000426221.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.403C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.285C>T
  hgvsp: ENST00000369021.3:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.479C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.372C>T
  hgvsp: ENST00000369020.3:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29141
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro124Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-108068015-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068015
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068015
    reference: chr 6
allele count: 2
allele frequency: 1.654478673769895e-5
allele num: 120884
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.365T>G
  hgvsp: ENSP00000358016.3:p.Phe122Cys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.396T>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.278T>G
  hgvsp: ENSP00000358017.3:p.Phe93Cys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.383T>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.191T>G
  hgvsp: ENSP00000395589.1:p.Phe64Cys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.278T>G
  hgvsp: ENSP00000404688.1:p.Phe93Cys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.191T>G
  hgvsp: ENSP00000358018.2:p.Phe64Cys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.472T>G
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe122Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/6-108068017-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068017
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068017
    reference: chr 6
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.276T>G
  hgvsp: ENSP00000358017.3:p.His92Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.189T>G
  hgvsp: ENSP00000358018.2:p.His63Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.470T>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.189T>G
  hgvsp: ENSP00000395589.1:p.His63Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.381T>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.363T>G
  hgvsp: ENSP00000358016.3:p.His121Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.276T>G
  hgvsp: ENSP00000404688.1:p.His92Gln
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.394T>G
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His121Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-108068020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068020
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068020
    reference: chr 6
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.391G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.467G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.360G>A
  hgvsp: ENST00000369020.3:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.273G>A
  hgvsp: ENST00000369021.3:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.378G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.186G>A
  hgvsp: ENST00000426221.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.186G>A
  hgvsp: ENST00000369022.2:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.273G>A
  hgvsp: ENST00000440927.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu120Glu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

6-108068024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068024
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068024
    reference: chr 6
allele count: 2
allele frequency: 1.654697686732634e-5
allele num: 120868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.387C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.356C>T
  hgvsp: ENSP00000358016.3:p.Pro119Leu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.269C>T
  hgvsp: ENSP00000358017.3:p.Pro90Leu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.182C>T
  hgvsp: ENSP00000358018.2:p.Pro61Leu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.269C>T
  hgvsp: ENSP00000404688.1:p.Pro90Leu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.182C>T
  hgvsp: ENSP00000395589.1:p.Pro61Leu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.374C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.463C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42752
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro119Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

6-108068026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068026
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068026
    reference: chr 6
allele count: 3
allele frequency: 2.48184119525472e-5
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.267C>T
  hgvsp: ENST00000440927.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.180C>T
  hgvsp: ENST00000426221.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.385C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.354C>T
  hgvsp: ENST00000369020.3:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.372C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.461C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.267C>T
  hgvsp: ENST00000369021.3:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.180C>T
  hgvsp: ENST00000369022.2:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu118Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-108068034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068034
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068034
    reference: chr 6
allele count: 2
allele frequency: 1.654642928056125e-5
allele num: 120872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.259C>T
  hgvsp: ENSP00000404688.1:p.Gln87Ter
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.346C>T
  hgvsp: ENSP00000358016.3:p.Gln116Ter
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.172C>T
  hgvsp: ENSP00000358018.2:p.Gln58Ter
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.259C>T
  hgvsp: ENSP00000358017.3:p.Gln87Ter
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.172C>T
  hgvsp: ENSP00000395589.1:p.Gln58Ter
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.453C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.364C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.377C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln116Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-108068038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068038
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068038
    reference: chr 6
allele count: 2
allele frequency: 1.655163281857755e-5
allele num: 120834
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.342G>A
  hgvsp: ENST00000369020.3:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.449G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.360G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.168G>A
  hgvsp: ENST00000369022.2:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.255G>A
  hgvsp: ENST00000369021.3:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.168G>A
  hgvsp: ENST00000426221.1:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.373G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.255G>A
  hgvsp: ENST00000440927.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys114Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

6-108068045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068045
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068045
    reference: chr 6
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.161G>A
  hgvsp: ENSP00000358018.2:p.Arg54Lys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.442G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.248G>A
  hgvsp: ENSP00000404688.1:p.Arg83Lys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.335G>A
  hgvsp: ENSP00000358016.3:p.Arg112Lys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.366G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.248G>A
  hgvsp: ENSP00000358017.3:p.Arg83Lys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.161G>A
  hgvsp: ENSP00000395589.1:p.Arg54Lys
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.353G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg112Lys
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-108068058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068058
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068058
    reference: chr 6
allele count: 3
allele frequency: 2.48809859505366e-5
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.322C>T
  hgvsp: ENSP00000358016.3:p.Pro108Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.429C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.235C>T
  hgvsp: ENSP00000404688.1:p.Pro79Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.148C>T
  hgvsp: ENSP00000395589.1:p.Pro50Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.235C>T
  hgvsp: ENSP00000358017.3:p.Pro79Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.353C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.340C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.148C>T
  hgvsp: ENSP00000358018.2:p.Pro50Ser
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro108Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

6-108068062-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068062
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068062
    reference: chr 6
allele count: 5
allele frequency: 4.150135294410598e-5
allele num: 120478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.425G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.349G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.318G>A
  hgvsp: ENST00000369020.3:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.231G>A
  hgvsp: ENST00000369021.3:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.144G>A
  hgvsp: ENST00000426221.1:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.144G>A
  hgvsp: ENST00000369022.2:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.231G>A
  hgvsp: ENST00000440927.1:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.336G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29048
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala106Ala
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

6-108068063-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068063
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068063
    reference: chr 6
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.230C>A
  hgvsp: ENSP00000404688.1:p.Ala77Glu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.348C>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.143C>A
  hgvsp: ENSP00000358018.2:p.Ala48Glu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.143C>A
  hgvsp: ENSP00000395589.1:p.Ala48Glu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.317C>A
  hgvsp: ENSP00000358016.3:p.Ala106Glu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.230C>A
  hgvsp: ENSP00000358017.3:p.Ala77Glu
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.424C>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.335C>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala106Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

6-108068064-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068064
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068064
    reference: chr 6
allele count: 229
allele frequency: 1.902499003057291e-3
allele num: 120368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.229G>A
  hgvsp: ENSP00000404688.1:p.Ala77Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.142G>A
  hgvsp: ENSP00000358018.2:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.229G>A
  hgvsp: ENSP00000358017.3:p.Ala77Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.347G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.334G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.316G>A
  hgvsp: ENSP00000358016.3:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.142G>A
  hgvsp: ENSP00000395589.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.423G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9026
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 29023
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 16324
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala106Thr
num of homozygotes: 5
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

6-108068066-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068066
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068066
    reference: chr 6
allele count: 1
allele frequency: 8.314487162431821e-6
allele num: 120272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.227A>T
  hgvsp: ENSP00000404688.1:p.Asn76Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.314A>T
  hgvsp: ENSP00000358016.3:p.Asn105Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.140A>T
  hgvsp: ENSP00000358018.2:p.Asn47Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.345A>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.227A>T
  hgvsp: ENSP00000358017.3:p.Asn76Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.140A>T
  hgvsp: ENSP00000395589.1:p.Asn47Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.421A>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.332A>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn105Ile
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

6-108068066-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068066
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068066
    reference: chr 6
allele count: 30
allele frequency: 2.494346148729546e-4
allele num: 120272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.140A>G
  hgvsp: ENSP00000358018.2:p.Asn47Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.314A>G
  hgvsp: ENSP00000358016.3:p.Asn105Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.140A>G
  hgvsp: ENSP00000395589.1:p.Asn47Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.227A>G
  hgvsp: ENSP00000358017.3:p.Asn76Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.227A>G
  hgvsp: ENSP00000404688.1:p.Asn76Ser
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.332A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.345A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.421A>G
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16332
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 9.75e1
  variant carriers: 30
hgvs: p.Asn105Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

6-108068069-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068069
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068069
    reference: chr 6
allele count: 1
allele frequency: 8.317530026283395e-6
allele num: 120228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.137C>G
  hgvsp: ENSP00000395589.1:p.Ala46Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.311C>G
  hgvsp: ENSP00000358016.3:p.Ala104Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.329C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.418C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.224C>G
  hgvsp: ENSP00000404688.1:p.Ala75Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.224C>G
  hgvsp: ENSP00000358017.3:p.Ala75Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.137C>G
  hgvsp: ENSP00000358018.2:p.Ala46Gly
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.342C>G
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala104Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-108068083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068083
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068083
    reference: chr 6
allele count: 1
allele frequency: 8.385041086701324e-6
allele num: 119260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.123C>T
  hgvsp: ENST00000369022.2:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.404C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.328C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.210C>T
  hgvsp: ENST00000440927.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.210C>T
  hgvsp: ENST00000369021.3:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.297C>T
  hgvsp: ENST00000369020.3:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.123C>T
  hgvsp: ENST00000426221.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.315C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr99Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

6-108068085-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068085
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068085
    reference: chr 6
allele count: 1
allele frequency: 8.397574780403419e-6
allele num: 119082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.121T>C
  hgvsp: ENSP00000395589.1:p.Tyr41His
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.121T>C
  hgvsp: ENSP00000358018.2:p.Tyr41His
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.295T>C
  hgvsp: ENSP00000358016.3:p.Tyr99His
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.402T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.208T>C
  hgvsp: ENSP00000404688.1:p.Tyr70His
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.326T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.313T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.208T>C
  hgvsp: ENSP00000358017.3:p.Tyr70His
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr99His
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

6-108068091-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068091
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068091
    reference: chr 6
allele count: 1
allele frequency: 8.476300264460568e-6
allele num: 117976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.307T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.202T>C
  hgvsp: ENSP00000358017.3:p.Cys68Arg
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.115T>C
  hgvsp: ENSP00000395589.1:p.Cys39Arg
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.115T>C
  hgvsp: ENSP00000358018.2:p.Cys39Arg
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.396T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.289T>C
  hgvsp: ENSP00000358016.3:p.Cys97Arg
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.202T>C
  hgvsp: ENSP00000404688.1:p.Cys68Arg
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.320T>C
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27551
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8466
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys97Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

6-108068092-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068092
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068092
    reference: chr 6
allele count: 8
allele frequency: 6.782304966342812e-5
allele num: 117954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.114C>T
  hgvsp: ENST00000426221.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.201C>T
  hgvsp: ENST00000440927.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.306C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.319C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.114C>T
  hgvsp: ENST00000369022.2:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.395C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.288C>T
  hgvsp: ENST00000369020.3:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.201C>T
  hgvsp: ENST00000369021.3:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7671
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27555
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
hgvs: c.288C>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

6-108068097-C-CGGAGACAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068097
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068105
    reference: chr 6
allele count: 28
allele frequency: 2.385171050838217e-4
allele num: 117392
alternate allele: CGGAGACAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-12_318-5dupCTGTCTCC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-12_287-5dupCTGTCTCC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-12_200-5dupCTGTCTCC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-12_113-5dupCTGTCTCC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-12_200-5dupCTGTCTCC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-12_394-5dupCTGTCTCC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-12_305-5dupCTGTCTCC
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-12_113-5dupCTGTCTCC
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15557
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.75e1
  variant carriers: 0
hgvs: c.287-12_287-5dupCTGTCTCC
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-108068103-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068103
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068103
    reference: chr 6
allele count: 2
allele frequency: 1.714677640603567e-5
allele num: 116640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-10G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-10G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-10G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-10G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-10G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-10G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-10G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-10G>C
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15086
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

6-108068118-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068118
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068118
    reference: chr 6
allele count: 1
allele frequency: 8.767161719065069e-6
allele num: 114062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-25G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-25G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-25G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-25G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-25G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-25G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-25G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-25G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8811
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/6-108068119-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068119
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068119
    reference: chr 6
allele count: 2
allele frequency: 1.75703693291633e-5
allele num: 113828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-26G>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-26G>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-26G>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-26G>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-26G>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-26G>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-26G>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-26G>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

6-108068122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068122
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068122
    reference: chr 6
allele count: 42
allele frequency: 3.729819014972559e-4
allele num: 112606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-29C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-29C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-29C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-29C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-29C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-29C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-29C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-29C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7304
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11748
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18479
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9907
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

6-108068122-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068122
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068122
    reference: chr 6
allele count: 2
allele frequency: 1.776104292844076e-5
allele num: 112606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-29C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-29C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-29C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-29C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-29C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-29C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-29C>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-29C>G
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7304
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24669
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

6-108068133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068133
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068133
    reference: chr 6
allele count: 1
allele frequency: 9.166911117629804e-6
allele num: 109088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-40G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-40G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-40G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-40G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-40G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-40G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-40G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-40G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15289
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

6-108068134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068134
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068134
    reference: chr 6
allele count: 2
allele frequency: 1.84593801340151e-5
allele num: 108346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-41C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-41C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-41C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-41C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-41C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-41C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-41C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-41C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15272
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7529
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6828
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-108068139-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068139
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068139
    reference: chr 6
allele count: 1
allele frequency: 9.312894633910112e-6
allele num: 107378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-46T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-46T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-46T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-46T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-46T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-46T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-46T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-46T>C
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15446
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9037
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

6-108068140-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068140
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068140
    reference: chr 6
allele count: 2
allele frequency: 1.887290982523686e-5
allele num: 105972
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-47C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-47C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-47C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-47C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-47C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-47C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-47C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-47C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12049
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8059
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

6-108068142-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108068142
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108068142
    reference: chr 6
allele count: 851
allele frequency: 8.10244691992764e-3
allele num: 105030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.200-49G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.394-49G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.113-49G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.318-49G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.200-49G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.287-49G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.305-49G>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.113-49G>C
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15274
  bin: 1.75e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11332
  bin: 1.25e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 2.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 2.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.25e1
  variant carriers: 7
num of homozygotes: 19
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-108070838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108070838
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108070838
    reference: chr 6
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.286+50G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.199+50G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.317+50G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.112+50G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.199+50G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.112+50G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.304+50G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.393+50G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5786
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-108070851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108070851
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108070851
    reference: chr 6
allele count: 16
allele frequency: 1.319413520690053e-4
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.317+37C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.112+37C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.286+37C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.199+37C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.112+37C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.199+37C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.393+37C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.304+37C>T
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9974
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

6-108070854-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108070854
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108070854
    reference: chr 6
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.112+34G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.393+34G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.199+34G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.304+34G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.286+34G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.317+34G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.199+34G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.112+34G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9983
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

6-108070865-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108070865
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108070865
    reference: chr 6
allele count: 6
allele frequency: 4.947229551451187e-5
allele num: 121280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.199+23A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.304+23A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.393+23A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.286+23A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.112+23A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.112+23A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.199+23A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.317+23A>G
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

6-108070879-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108070879
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108070879
    reference: chr 6
allele count: 4
allele frequency: 3.297717979158422e-5
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.112+9G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.199+9G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.286+9G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.199+9G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.304+9G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.112+9G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.317+9G>A
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.393+9G>A
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10006
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

6-108070880-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108070880
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108070880
    reference: chr 6
allele count: 75
allele frequency: 6.182813427422014e-4
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.304+8A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.199+8A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.199+8A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.286+8A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.112+8A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.112+8A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.393+8A>G
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.317+8A>G
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25405
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17085
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 7.25e1
  variant carriers: 0
hgvs: c.286+8A>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

6-108070882-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108070882
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108070882
    reference: chr 6
allele count: 19
allele frequency: 1.566261087479803e-4
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.112+6T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.317+6T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.199+6T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.286+6T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.393+6T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.199+6T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.304+6T>C
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.112+6T>C
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 25451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: c.286+6T>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

6-108070890-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108070890
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 108070890
    reference: chr 6
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358018
  ensembl transcript: ENST00000369022
  gene symbol: SCML4
  hgvsc: ENST00000369022.2:c.110C>T
  hgvsp: ENSP00000358018.2:p.Thr37Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000459992
  gene symbol: SCML4
  hgvsc: ENST00000459992.1:n.302C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000404688
  ensembl transcript: ENST00000440927
  gene symbol: SCML4
  hgvsc: ENST00000440927.1:c.197C>T
  hgvsp: ENSP00000404688.1:p.Thr66Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000473515
  gene symbol: SCML4
  hgvsc: ENST00000473515.1:n.315C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000395589
  ensembl transcript: ENST00000426221
  gene symbol: SCML4
  hgvsc: ENST00000426221.1:c.110C>T
  hgvsp: ENSP00000395589.1:p.Thr37Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl transcript: ENST00000463507
  gene symbol: SCML4
  hgvsc: ENST00000463507.1:n.391C>T
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358016
  ensembl transcript: ENST00000369020
  gene symbol: SCML4
  hgvsc: ENST00000369020.3:c.284C>T
  hgvsp: ENSP00000358016.3:p.Thr95Ile
  variant of: http://identifiers.org/hgnc/21397
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146285
  ensembl protein: ENSP00000358017
  ensembl transcript: ENST00000369021
  gene symbol: SCML4
  hgvsc: ENST00000369021.3:c.197C>T
  hgvsp: ENSP00000358017.3:p.Thr66Ile
  variant of: http://identifiers.org/hgnc/21397
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr95Ile
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 85
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5825
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6290
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6929
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1784
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 3.31769e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.496e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 155
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26904
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6554
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.210845111047014e-5
allele num: 13868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

QD
type: SiteQuality
SIO_000300: 7.14e0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 2.335595e6

GenotypeQuality
all individuals: 1039
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.929e1

DP
type: SiteQuality
SIO_000300: 2.34967e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.294e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e-1

FS
type: SiteQuality
SIO_000300: 1.539e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.08e-1

GenotypeQuality
all individuals: 737
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540974512281567e-5
allele num: 64894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

DP
type: SiteQuality
SIO_000300: 2.353301e6

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

VQSLOD
type: SiteQuality
SIO_000300: -1.502e0

QD
type: SiteQuality
SIO_000300: 1.383e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.501e0

MQ
type: SiteQuality
SIO_000300: 5.647e1

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14627
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535862386730149e-5
allele num: 65110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

FS
type: SiteQuality
SIO_000300: 2.053e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

DP
type: SiteQuality
SIO_000300: 2.364321e6

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14627
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.920634920634921e-5
allele num: 10080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

FS
type: SiteQuality
SIO_000300: 2.053e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 2.364321e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.307e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

GenotypeQuality
all individuals: 1780
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29848
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529894131326112e-5
allele num: 65364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15014
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.826e1

DP
type: SiteQuality
SIO_000300: 2.376584e6

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

QD
type: SiteQuality
SIO_000300: 9.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.122000000000001e-1

GenotypeQuality
all individuals: 7096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14660
bin: 9.75e1
variant carriers: 170

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.053268765133172e-4
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 160
allele frequency: 2.419696328110822e-3
allele num: 66124
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.953506544246923e-4
allele num: 10238
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.039e1

DP
type: SiteQuality
SIO_000300: 2.42434e6

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

FS
type: SiteQuality
SIO_000300: 1.134e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.743e0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14625
bin: 9.75e1
variant carriers: 900

GenotypeQuality
all individuals: 1165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 74
allele frequency: 1.118838826731176e-2
allele num: 6614
num of homozygotes: 1

Other
type: Population
allele count: 6
allele frequency: 6.63716814159292e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 109
allele frequency: 6.692043222003929e-3
allele num: 16288
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

East Asian
type: Population
allele count: 527
allele frequency: 6.105189990732159e-2
allele num: 8632
num of homozygotes: 18

Latino
type: Population
allele count: 5
allele frequency: 4.323763403666552e-4
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 201
allele frequency: 3.034786810001208e-3
allele num: 66232
num of homozygotes: 2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.45e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

FS
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

DP
type: SiteQuality
SIO_000300: 2.485579e6

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13873
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 460
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32462
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50952510340247e-5
allele num: 66246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.921129503407984e-4
allele num: 10270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

QD
type: SiteQuality
SIO_000300: 1.105e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

DP
type: SiteQuality
SIO_000300: 2.380925e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13869
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

QD
type: SiteQuality
SIO_000300: 1.199e1

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.109e0

DP
type: SiteQuality
SIO_000300: 2.382249e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.047863196308472e-5
allele num: 66314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.313e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 2.383012e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

FS
type: SiteQuality
SIO_000300: 3.18e0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

GenotypeQuality
all individuals: 13864
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2037
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7298
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015317814497648e-5
allele num: 66328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 2.481e0

QD
type: SiteQuality
SIO_000300: 1.039e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

DP
type: SiteQuality
SIO_000300: 2.382119e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7298
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13864
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090875867949811e-5
allele num: 16418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.244e1

FS
type: SiteQuality
SIO_000300: 2.945e0

DP
type: SiteQuality
SIO_000300: 2.38217e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.383e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.506e0

MQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.311258278145695e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 239
allele frequency: 1.455719332440005e-2
allele num: 16418
num of homozygotes: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507522537461935e-5
allele num: 66334
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.199e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.449e0

DP
type: SiteQuality
SIO_000300: 2.393667e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13786
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32584
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7307
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015135982632817e-5
allele num: 66332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

DP
type: SiteQuality
SIO_000300: 2.379232e6

QD
type: SiteQuality
SIO_000300: 1.306e1

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 1.246e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.9e0

MQRankSum
type: SiteQuality
SIO_000300: 7.34e-1

ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 1.217433649866082e-4
allele num: 16428
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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QD
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 906
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele num: 10294
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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East Asian
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 7.966e0

MQ
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 3.6e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele frequency: 1.507840772014475e-5
allele num: 66320
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African
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66310
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South Asian
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allele num: 16444
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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Other
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FS
type: SiteQuality
SIO_000300: 1.0074e1

QD
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
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allele num: 11564
num of homozygotes: 0

East Asian
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allele frequency: 1.158748551564311e-4
allele num: 8630
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African
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.543070935039074e-5
allele num: 66286
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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DP
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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allele frequency: 0.0e0
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South Asian
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66248
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European (Finnish)
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
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num of homozygotes: 0

East Asian
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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allele num: 65762
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Other
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MQ
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele num: 65596
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Latino
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.187e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.130000000000001e0

DP
type: SiteQuality
SIO_000300: 2.343114e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.838e0

GenotypeQuality
all individuals: 452
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13750
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 318
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 1.488e0

VQSLOD
type: SiteQuality
SIO_000300: -2.424e0

MQRankSum
type: SiteQuality
SIO_000300: -1.971e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.586e0

DP
type: SiteQuality
SIO_000300: 2.341167e6

QD
type: SiteQuality
SIO_000300: 1.552e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13857
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 673
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65738
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.809691975671964e-5
allele num: 10194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.217e1

FS
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 2.349975e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.621e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.72e-1

GenotypeQuality
all individuals: 203
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1785
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6481
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13615
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 415
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 29473
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.738580685949107e-4
allele num: 63270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.951685783802572e-4
allele num: 5754
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

DP
type: SiteQuality
SIO_000300: 2.358093e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.702e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

VQSLOD
type: SiteQuality
SIO_000300: -6.858e1

FS
type: SiteQuality
SIO_000300: 1.17319e2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

QD
type: SiteQuality
SIO_000300: 8.4e-1

GenotypeQuality
all individuals: 1826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66294
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.03e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

DP
type: SiteQuality
SIO_000300: 2.383693e6

QD
type: SiteQuality
SIO_000300: 1.62e1

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14387
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 466
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508113651444773e-5
allele num: 66308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.839e0

DP
type: SiteQuality
SIO_000300: 2.384653e6

QD
type: SiteQuality
SIO_000300: 1.424e1

FS
type: SiteQuality
SIO_000300: 6.982e0

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 6504
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1609
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 30736
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 403
bin: 9.25e1
variant carriers: 18

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1638
bin: 7.75e1
variant carriers: 10

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 6

Latino
type: Population
allele count: 1114
allele frequency: 9.633344863369077e-2
allele num: 11564
num of homozygotes: 73

South Asian
type: Population
allele count: 2969
allele frequency: 1.804424456059317e-1
allele num: 16454
num of homozygotes: 300

European (Finnish)
type: Population
allele count: 1030
allele frequency: 1.557302691260962e-1
allele num: 6614
num of homozygotes: 82

African
type: Population
allele count: 448
allele frequency: 4.342768514928267e-2
allele num: 10316
num of homozygotes: 9

East Asian
type: Population
allele count: 871
allele frequency: 1.010909935004643e-1
allele num: 8616
num of homozygotes: 46

European (Non-Finnish)
type: Population
allele count: 11905
allele frequency: 1.792921686746988e-1
allele num: 66400
num of homozygotes: 1106

Other
type: Population
allele count: 154
allele frequency: 1.699779249448124e-1
allele num: 906
num of homozygotes: 13

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.873708e6

FS
type: SiteQuality
SIO_000300: 1.856e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.99e-2

QD
type: SiteQuality
SIO_000300: 1.486e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2224
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9185
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013046491307361e-5
allele num: 66378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

FS
type: SiteQuality
SIO_000300: 3.047e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

DP
type: SiteQuality
SIO_000300: 1.745132e6

GenotypeQuality
all individuals: 42588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.827262760384943e-4
allele num: 16418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011957471160507e-5
allele num: 66402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.533e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 1.745367e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

VQSLOD
type: SiteQuality
SIO_000300: 4.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.745502e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

QD
type: SiteQuality
SIO_000300: 1.342e1

FS
type: SiteQuality
SIO_000300: 4.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.21e0

MQRankSum
type: SiteQuality
SIO_000300: 6.98e-1

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.285e1

VQSLOD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.820000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e0

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

DP
type: SiteQuality
SIO_000300: 1.745203e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-2

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

DP
type: SiteQuality
SIO_000300: 1.745033e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.607e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9189
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1173
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variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.988e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

FS
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

QD
type: SiteQuality
SIO_000300: 7.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.97e-1

DP
type: SiteQuality
SIO_000300: 1.745153e6

VQSLOD
type: SiteQuality
SIO_000300: -4.297e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42783
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 379
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.516575833308241e-5
allele num: 66422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.045e0

FS
type: SiteQuality
SIO_000300: 2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

DP
type: SiteQuality
SIO_000300: 1.744974e6

MQRankSum
type: SiteQuality
SIO_000300: -9.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-1

QD
type: SiteQuality
SIO_000300: 1.432e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

GenotypeQuality
all individuals: 494
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 9187
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 2239
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variant carriers: 0

GenotypeQuality
all individuals: 393
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variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 2205
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GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010869237948996e-5
allele num: 66426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.281e1

FS
type: SiteQuality
SIO_000300: 7.121e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

DP
type: SiteQuality
SIO_000300: 1.744525e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.829e0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
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variant carriers: 0

GenotypeQuality
all individuals: 42715
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 1528
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variant carriers: 2

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011503945070168e-5
allele num: 66412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.74368e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.943e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.393e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 1525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2237
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.047e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.168e0

VQSLOD
type: SiteQuality
SIO_000300: -2.388e0

MQ
type: SiteQuality
SIO_000300: 5.837e1

FS
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 1.742885e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.019e0

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
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variant carriers: 0

GenotypeQuality
all individuals: 42365
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 9107
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.905287623474724e-4
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.68e-1

FS
type: SiteQuality
SIO_000300: 2.964e0

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.969e0

DP
type: SiteQuality
SIO_000300: 1.738399e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 390
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 1512
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 487
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.872216844143272e-4
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.578e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

QD
type: SiteQuality
SIO_000300: 1.294e1

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.03e-1

DP
type: SiteQuality
SIO_000300: 1.736698e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42103
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9043
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.734161e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.238e0

QD
type: SiteQuality
SIO_000300: 1.166e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e0

GenotypeQuality
all individuals: 2196
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 224

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1140
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variant carriers: 0

GenotypeQuality
all individuals: 42184
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.037553583288052e-4
allele num: 66252
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596503375454388e-4
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 183
allele frequency: 1.134110064452157e-2
allele num: 16136
num of homozygotes: 5

Other
type: Population
allele count: 2
allele frequency: 2.232142857142857e-3
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.964e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

DP
type: SiteQuality
SIO_000300: 1.733813e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.44e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 474
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GenotypeQuality
all individuals: 124
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 1143
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variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

QD
type: SiteQuality
SIO_000300: 1.345e1

FS
type: SiteQuality
SIO_000300: 6.02e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.725237e6

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 474
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variant carriers: 0

GenotypeQuality
all individuals: 42155
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variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.378151514236541e-4
allele num: 66238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16064
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

DP
type: SiteQuality
SIO_000300: 1.725237e6

FS
type: SiteQuality
SIO_000300: 6.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 42291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
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variant carriers: 1

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 376
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2144
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variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510163399679845e-5
allele num: 66218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.251e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.978e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.722876e6

GenotypeQuality
all individuals: 240
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 268
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variant carriers: 0

GenotypeQuality
all individuals: 8855
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51666818333485e-5
allele num: 65934
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.723e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

FS
type: SiteQuality
SIO_000300: 3.272e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.84e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 1.702065e6

QD
type: SiteQuality
SIO_000300: 1.249e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2151
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15436
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.13e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.02e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.872e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e0

DP
type: SiteQuality
SIO_000300: 1.697433e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 128
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 255
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GenotypeQuality
all individuals: 1299
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65428
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.827e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.734e1

QD
type: SiteQuality
SIO_000300: 6.72e0

DP
type: SiteQuality
SIO_000300: 1.668322e6

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.046e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 58
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 249
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 491
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GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 468
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GenotypeQuality
all individuals: 39214
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GenotypeQuality
all individuals: 1301
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variant carriers: 8

GenotypeQuality
all individuals: 2106
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GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 363
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.586174213471122e-5
allele num: 65414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.352554646640741e-4
allele num: 14914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.0e-1

DP
type: SiteQuality
SIO_000300: 1.668059e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.066e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

QD
type: SiteQuality
SIO_000300: 1.287e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 28

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 174
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variant carriers: 0

GenotypeQuality
all individuals: 8353
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.784735812133073e-5
allele num: 10220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.681433304699963e-4
allele num: 65192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743375174337517e-4
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14644
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.15473441108545e-3
allele num: 866
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 4.98e0

MQRankSum
type: SiteQuality
SIO_000300: -4.353e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.656109e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQ
type: SiteQuality
SIO_000300: 5.132e1

QD
type: SiteQuality
SIO_000300: 6.73e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.084515731030228e-5
allele num: 64840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.507e-1

FS
type: SiteQuality
SIO_000300: 4.472e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 9.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.625725e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6974
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 946
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568775100401606e-5
allele num: 63744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 3.57e0

MQRankSum
type: SiteQuality
SIO_000300: -6.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.442e0

QD
type: SiteQuality
SIO_000300: 1.348e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.486733e6

GenotypeQuality
all individuals: 9110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 421
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GenotypeQuality
all individuals: 6876
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.769285208775655e-4
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.234e0

VQSLOD
type: SiteQuality
SIO_000300: 4.97e-1

DP
type: SiteQuality
SIO_000300: 1.469789e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 1.003e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

GenotypeQuality
all individuals: 900
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 42

GenotypeQuality
all individuals: 637
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GenotypeQuality
all individuals: 5291
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.689922480620155e-4
allele num: 6192
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 7.763975155279503e-4
allele num: 12880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 4.118094272681196e-4
allele num: 63136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

QD
type: SiteQuality
SIO_000300: 1.508e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

DP
type: SiteQuality
SIO_000300: 1.382652e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.552795031055901e-4
allele num: 12880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.382652e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.508e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61680
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.534e-1

MQ
type: SiteQuality
SIO_000300: 5.635e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
type: Population
allele count: 1
allele frequency: 1.025851456709069e-4
allele num: 9748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631534294850878e-5
allele num: 61292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.225e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.922e0

GenotypeQuality
all individuals: 4581
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3173
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GenotypeQuality
all individuals: 1018
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.644195988161789e-5
allele num: 60820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.283e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

DP
type: SiteQuality
SIO_000300: 1.190543e6

GenotypeQuality
all individuals: 1223
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.170946441672781e-5
allele num: 10904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.663008048958957e-5
allele num: 60132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

DP
type: SiteQuality
SIO_000300: 1.178871e6

QD
type: SiteQuality
SIO_000300: 1.526e1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5669
bin: 4.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 802

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 6083
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4254
bin: 5.25e1
variant carriers: 5

Latino
type: Population
allele count: 5
allele frequency: 4.615100609193281e-4
allele num: 10834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 68
allele frequency: 1.161995898838004e-2
allele num: 5852
num of homozygotes: 1

Other
type: Population
allele count: 5
allele frequency: 6.648936170212766e-3
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 88
allele frequency: 8.377760853008377e-3
allele num: 10504
num of homozygotes: 1

East Asian
type: Population
allele count: 495
allele frequency: 6.316998468606431e-2
allele num: 7836
num of homozygotes: 15

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 190
allele frequency: 3.183219407586114e-3
allele num: 59688
num of homozygotes: 2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

QD
type: SiteQuality
SIO_000300: 1.575e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 1.173871e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9949
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 32212
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3672
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 2.446e0

MQRankSum
type: SiteQuality
SIO_000300: -1.057e0

DP
type: SiteQuality
SIO_000300: 1.914506e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.515e1

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 32589
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variant carriers: 0

GenotypeQuality
all individuals: 5783
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 3672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.73370319001387e-3
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.412e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e0

DP
type: SiteQuality
SIO_000300: 1.916551e6

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1581
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 2450
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variant carriers: 0

GenotypeQuality
all individuals: 5773
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GenotypeQuality
all individuals: 2895
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.444e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 5.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

DP
type: SiteQuality
SIO_000300: 1.915883e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.002e0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 107
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GenotypeQuality
all individuals: 5771
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variant carriers: 6

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 1584
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GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 2895
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variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.501425270801452e-5
allele num: 66654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.237e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.9177e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2898
bin: 7.25e1
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 5764
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
all individuals: 1583
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GenotypeQuality
all individuals: 1116
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variant carriers: 0

GenotypeQuality
all individuals: 3679
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.773e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.402e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.917883e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 9.75e1
variant carriers: 75

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 8.25e1
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 1116
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GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10008
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.000060000600006e-5
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 66
allele frequency: 6.360832690824981e-3
allele num: 10376
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.032e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.183e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

DP
type: SiteQuality
SIO_000300: 1.919312e6

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 8.25e1
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GenotypeQuality
all individuals: 5704
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 3681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.699946001079978e-4
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.272e1

DP
type: SiteQuality
SIO_000300: 1.914331e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-2