3-37330759-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330759
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330759
    reference: chr 3
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+6996C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.577C>G
  hgvsp: ENSP00000387633.2:p.Arg193Gly
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15667C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.172C>G
  hgvsp: ENSP00000405842.1:p.Arg58Gly
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1880C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.559C>G
  hgvsp: ENSP00000354486.2:p.Arg187Gly
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.625C>G
  hgvsp: ENSP00000349305.4:p.Arg209Gly
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.638C>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg209Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-37330779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330779
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330779
    reference: chr 3
allele count: 2
allele frequency: 1.657302905251993e-5
allele num: 120678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15687A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1900A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.579A>G
  hgvsp: ENST00000361924.2:c.579A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.597A>G
  hgvsp: ENST00000450863.2:c.597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7016A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.645A>G
  hgvsp: ENST00000356847.4:c.645A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.658A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.192A>G
  hgvsp: ENST00000437131.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg215Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

3-37330783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330783
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330783
    reference: chr 3
allele count: 1
allele frequency: 8.296689620841284e-6
allele num: 120530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1903+1G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7020G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.661+1G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.648+1G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.195+1G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.582+1G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15691G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.600+1G>A
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 9.25e1
  variant carriers: 0
hgvs: c.648+1G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

3-37330801-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330801
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330801
    reference: chr 3
allele count: 45
allele frequency: 3.753753753753754e-4
allele num: 119880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.661+19T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.600+19T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.648+19T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15709T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.582+19T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7038T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.195+19T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1903+19T>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-37330817-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330817
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330817
    reference: chr 3
allele count: 3
allele frequency: 2.51407884151247e-5
allele num: 119328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.661+35A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15725A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.582+35A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1903+35A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.600+35A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.648+35A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7054A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.195+35A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40320
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

3-37330818-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330818
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330818
    reference: chr 3
allele count: 1
allele frequency: 8.389261744966442e-6
allele num: 119200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15726T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.661+36T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1903+36T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.195+36T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.582+36T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.648+36T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.600+36T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7055T>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

3-37330819-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330819
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330819
    reference: chr 3
allele count: 1
allele frequency: 8.390951198227832e-6
allele num: 119176
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.648+37T>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1903+37T>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7056T>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.582+37T>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.195+37T>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15727T>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.600+37T>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.661+37T>A
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40321
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

3-37330827-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330827
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330827
    reference: chr 3
allele count: 1
allele frequency: 8.414108777598277e-6
allele num: 118848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.661+45A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.195+45A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.648+45A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.600+45A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7064A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15735A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.582+45A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1903+45A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-37330829-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330829
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330829
    reference: chr 3
allele count: 1
allele frequency: 8.432840855427377e-6
allele num: 118584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15737A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1903+47A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.600+47A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.661+47A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7066A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.195+47A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.582+47A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.648+47A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-37330831-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330831
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330831
    reference: chr 3
allele count: 1
allele frequency: 8.446373971653969e-6
allele num: 118394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15739T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.582+49T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.648+49T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1903+49T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.195+49T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7068T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.661+49T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.600+49T>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-37330834-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37330834
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37330834
    reference: chr 3
allele count: 1
allele frequency: 8.458376330079678e-6
allele num: 118226
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.648+52T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+15742T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1903+52T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.582+52T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+7071T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.195+52T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.600+52T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.661+52T>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-37336421-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336421
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336421
    reference: chr 3
allele count: 1
allele frequency: 8.361204013377926e-6
allele num: 119600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-49A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-52A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-49A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-49A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-49A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21329A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-49A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12658A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7275
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-37336432-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336432
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336432
    reference: chr 3
allele count: 2
allele frequency: 1.669895130585799e-5
allele num: 119768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-38T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-38T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21340T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-38T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12669T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-41T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-38T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-38T>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7274
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-37336432-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336432
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336431
    reference: chr 3
allele count: 1
allele frequency: 8.349475652928997e-6
allele num: 119768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-37delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-37delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-40delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12670delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-37delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21341delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-37delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-37delA
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: TA
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

3-37336433-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336433
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336433
    reference: chr 3
allele count: 9
allele frequency: 7.516285284783699e-5
allele num: 119740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-37A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-37A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-37A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12670A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-37A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-40A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21341A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-37A>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15012
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

3-37336434-TACTGAAAATTACCTGTAAATCATTTTATGTTTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336434
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336400
    reference: chr 3
allele count: 1
allele frequency: 8.34599142032082e-6
allele num: 119818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: splice acceptor
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29183
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: TACTGAAAATTACCTGTAAATCATTTTATGTTTTA
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

3-37336435-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336435
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336435
    reference: chr 3
allele count: 3
allele frequency: 2.504215429305999e-5
allele num: 119798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-35A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-35A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21343A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-38A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-35A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-35A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12672A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-35A>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7266
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-37336436-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336436
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336436
    reference: chr 3
allele count: 491
allele frequency: 4.098223824786325e-3
allele num: 119808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-37C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-34C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-34C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-34C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-34C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12673C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-34C>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21344C>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 9.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 15054
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 21431
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 14
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

3-37336440-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336440
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336440
    reference: chr 3
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-30A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21348A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-30A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-30A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12677A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-30A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-33A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-30A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

3-37336444-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336444
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336444
    reference: chr 3
allele count: 2
allele frequency: 1.666361167119361e-5
allele num: 120022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21352T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12681T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-26T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-26T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-26T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-26T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-26T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-29T>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6987
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

3-37336456-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336456
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336456
    reference: chr 3
allele count: 4
allele frequency: 3.319557171073379e-5
allele num: 120498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-14A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-17A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21364A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-14A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-14A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-14A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-14A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12693A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-37336460-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336460
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336460
    reference: chr 3
allele count: 6
allele frequency: 4.974794375165827e-5
allele num: 120608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-10T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-10T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-10T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-10T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12697T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21368T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-13T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-10T>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31483
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-37336466-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336466
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336466
    reference: chr 3
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.601-7T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21374T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.583-4T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.662-4T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.649-4T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12703T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1904-4T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.196-4T>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6978
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
hgvs: c.649-4T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-37336478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336478
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336478
    reference: chr 3
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.657A>G
  hgvsp: ENST00000356847.4:c.657A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.670A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.591A>G
  hgvsp: ENST00000361924.2:c.591A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21386A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12715A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.606A>G
  hgvsp: ENST00000450863.2:c.606A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1912A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.204A>G
  hgvsp: ENST00000437131.1:c.204A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln219Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

3-37336481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336481
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336481
    reference: chr 3
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.594G>A
  hgvsp: ENSP00000354486.2:p.Met198Ile
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.609G>A
  hgvsp: ENSP00000387633.2:p.Met203Ile
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.673G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.207G>A
  hgvsp: ENSP00000405842.1:p.Met69Ile
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21389G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.660G>A
  hgvsp: ENSP00000349305.4:p.Met220Ile
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1915G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12718G>A
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31895
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met220Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

3-37336483-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336483
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336483
    reference: chr 3
allele count: 11
allele frequency: 9.080402839689616e-5
allele num: 121140
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.662A>T
  hgvsp: ENSP00000349305.4:p.Asp221Val
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21391A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.675A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1917A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.611A>T
  hgvsp: ENSP00000387633.2:p.Asp204Val
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.209A>T
  hgvsp: ENSP00000405842.1:p.Asp70Val
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12720A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.596A>T
  hgvsp: ENSP00000354486.2:p.Asp199Val
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6983
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp221Val
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

3-37336506-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336506
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336506
    reference: chr 3
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.685C>T
  hgvsp: ENSP00000349305.4:p.Gln229Ter
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.619C>T
  hgvsp: ENSP00000354486.2:p.Gln207Ter
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12743C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1940C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.634C>T
  hgvsp: ENSP00000387633.2:p.Gln212Ter
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21414C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.698C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.232C>T
  hgvsp: ENSP00000405842.1:p.Gln78Ter
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32000
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln229Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

3-37336508-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336508
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336508
    reference: chr 3
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.621A>G
  hgvsp: ENST00000361924.2:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1942A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.700A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.687A>G
  hgvsp: ENST00000356847.4:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.636A>G
  hgvsp: ENST00000450863.2:c.636A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.234A>G
  hgvsp: ENST00000437131.1:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12745A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21416A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln229Gln
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-37336509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336509
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336509
    reference: chr 3
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.701G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21417G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.637G>A
  hgvsp: ENSP00000387633.2:p.Glu213Lys
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1943G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.235G>A
  hgvsp: ENSP00000405842.1:p.Glu79Lys
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.622G>A
  hgvsp: ENSP00000354486.2:p.Glu208Lys
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.688G>A
  hgvsp: ENSP00000349305.4:p.Glu230Lys
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12746G>A
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu230Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

3-37336509-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336509
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336509
    reference: chr 3
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.235G>C
  hgvsp: ENSP00000405842.1:p.Glu79Gln
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.688G>C
  hgvsp: ENSP00000349305.4:p.Glu230Gln
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.701G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.637G>C
  hgvsp: ENSP00000387633.2:p.Glu213Gln
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21417G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.622G>C
  hgvsp: ENSP00000354486.2:p.Glu208Gln
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12746G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1943G>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6972
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu230Gln
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

3-37336516-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336516
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336516
    reference: chr 3
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21424T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.695T>C
  hgvsp: ENSP00000349305.4:p.Phe232Ser
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1950T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.242T>C
  hgvsp: ENSP00000405842.1:p.Phe81Ser
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.644T>C
  hgvsp: ENSP00000387633.2:p.Phe215Ser
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.629T>C
  hgvsp: ENSP00000354486.2:p.Phe210Ser
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12753T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.708T>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9720
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe232Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-37336520-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336520
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336520
    reference: chr 3
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.699T>G
  hgvsp: ENSP00000349305.4:p.Asp233Glu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21428T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.246T>G
  hgvsp: ENSP00000405842.1:p.Asp82Glu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.712T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.648T>G
  hgvsp: ENSP00000387633.2:p.Asp216Glu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.633T>G
  hgvsp: ENSP00000354486.2:p.Asp211Glu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12757T>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1954T>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp233Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

3-37336529-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336529
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336529
    reference: chr 3
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.657A>T
  hgvsp: ENSP00000387633.2:p.Leu219Phe
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12766A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.255A>T
  hgvsp: ENSP00000405842.1:p.Leu85Phe
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21437A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.721A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.708A>T
  hgvsp: ENSP00000349305.4:p.Leu236Phe
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.642A>T
  hgvsp: ENSP00000354486.2:p.Leu214Phe
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1963A>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu236Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

3-37336536-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336536
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336536
    reference: chr 3
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.649A>G
  hgvsp: ENSP00000354486.2:p.Lys217Glu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.715A>G
  hgvsp: ENSP00000349305.4:p.Lys239Glu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21444A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.664A>G
  hgvsp: ENSP00000387633.2:p.Lys222Glu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.262A>G
  hgvsp: ENSP00000405842.1:p.Lys88Glu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12773A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1970A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.728A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6968
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31949
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys239Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-37336543-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336543
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336543
    reference: chr 3
allele count: 2
allele frequency: 1.650192247396822e-5
allele num: 121198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21451A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12780A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.722A>G
  hgvsp: ENSP00000349305.4:p.Gln241Arg
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1977A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.671A>G
  hgvsp: ENSP00000387633.2:p.Gln224Arg
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.269A>G
  hgvsp: ENSP00000405842.1:p.Gln90Arg
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.656A>G
  hgvsp: ENSP00000354486.2:p.Gln219Arg
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.735A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6966
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln241Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-37336546-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336546
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336546
    reference: chr 3
allele count: 2
allele frequency: 1.650219479190732e-5
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21454A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.725A>G
  hgvsp: ENSP00000349305.4:p.Tyr242Cys
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1980A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.659A>G
  hgvsp: ENSP00000354486.2:p.Tyr220Cys
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.272A>G
  hgvsp: ENSP00000405842.1:p.Tyr91Cys
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.674A>G
  hgvsp: ENSP00000387633.2:p.Tyr225Cys
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.738A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12783A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr242Cys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

3-37336564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336564
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336564
    reference: chr 3
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.290C>T
  hgvsp: ENSP00000405842.1:p.Thr97Ile
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12801C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.692C>T
  hgvsp: ENSP00000387633.2:p.Thr231Ile
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.756C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21472C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.743C>T
  hgvsp: ENSP00000349305.4:p.Thr248Ile
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1998C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.677C>T
  hgvsp: ENSP00000354486.2:p.Thr226Ile
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr248Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

3-37336565-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336565
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336565
    reference: chr 3
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.757T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.291T>C
  hgvsp: ENST00000437131.1:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.693T>C
  hgvsp: ENST00000450863.2:c.693T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21473T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.1999T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.744T>C
  hgvsp: ENST00000356847.4:c.744T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.678T>C
  hgvsp: ENST00000361924.2:c.678T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12802T>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr248Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

3-37336568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336568
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336568
    reference: chr 3
allele count: 2
allele frequency: 1.655409879486161e-5
allele num: 120816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696G>A
  hgvsp: ENST00000450863.2:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294G>A
  hgvsp: ENST00000437131.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000419177
  gene symbol: GOLGA4
  hgvsc: ENST00000419177.3:n.760G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21476G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747G>A
  hgvsp: ENST00000356847.4:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681G>A
  hgvsp: ENST00000361924.2:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12805G>A
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 9.25e1
  variant carriers: 0
hgvs: c.747G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-37336585-A-AAAAATAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336585
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336592
    reference: chr 3
allele count: 1
allele frequency: 8.370442294170824e-6
allele num: 119468
alternate allele: AAAAATAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+20_294+21insATACAAA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+20_747+21insATACAAA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+20_2002+21insATACAAA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+20_681+21insATACAAA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+20_696+21insATACAAA
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21090
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6937
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28087
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-37336591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336591
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336591
    reference: chr 3
allele count: 1
allele frequency: 8.423038695439767e-6
allele num: 118722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21499G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+23G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+23G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+23G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12828G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+23G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+23G>A
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13862
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8537
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-37336591-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336591
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336591
    reference: chr 3
allele count: 1
allele frequency: 8.423038695439767e-6
allele num: 118722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+23G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12828G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+23G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+23G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+23G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21499G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+23G>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20256
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

3-37336593-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336593
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336593
    reference: chr 3
allele count: 1
allele frequency: 8.45851942076059e-6
allele num: 118224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21501G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+25G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12830G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+25G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+25G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+25G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+25G>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19393
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

3-37336594-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336594
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336594
    reference: chr 3
allele count: 1
allele frequency: 8.461525443807009e-6
allele num: 118182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+26G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+26G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21502G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+26G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+26G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12831G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+26G>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 12772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19435
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

3-37336606-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336606
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336607
    reference: chr 3
allele count: 1
allele frequency: 8.56384345294168e-6
allele num: 116770
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+41dupA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+41dupA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+41dupA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12846dupA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+41dupA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21517dupA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+41dupA
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16480
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6867
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/3-37336608-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336608
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336608
    reference: chr 3
allele count: 1
allele frequency: 8.572947207791094e-6
allele num: 116646
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+40A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+40A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+40A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21516A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+40A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+40A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12845A>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8957
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6870
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4160
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

3-37336610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336610
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336610
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 115416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+42G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+42G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+42G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12847G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+42G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21518G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+42G>A
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6855
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

3-37336610-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336610
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336610
    reference: chr 3
allele count: 1
allele frequency: 8.664309974353643e-6
allele num: 115416
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+42G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+42G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21518G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+42G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+42G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12847G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+42G>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 13368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5229
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

3-37336610-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336610
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336609
    reference: chr 3
allele count: 5
allele frequency: 4.332154987176821e-5
allele num: 115416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+47delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12852delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+47delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21523delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+47delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+47delA
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+47delA
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13368
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8854
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5229
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6855
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: GA
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/3-37336611-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336611
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336611
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 116044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21519A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+43A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+43A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12848A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+43A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+43A>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+43A>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4064
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4063
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4608
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

3-37336613-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336613
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336613
    reference: chr 3
allele count: 5
allele frequency: 4.29981768773004e-5
allele num: 116284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+45A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+45A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+45A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12850A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+45A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21521A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+45A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11043
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4820
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

3-37336618-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336618
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336618
    reference: chr 3
allele count: 1
allele frequency: 8.821298142234612e-6
allele num: 113362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+50G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+50G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+50G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12855G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+50G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21526G>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+50G>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10987
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6844
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-37336619-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336619
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336619
    reference: chr 3
allele count: 1
allele frequency: 8.717179817985285e-6
allele num: 114716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.681+51A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.747+51A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2002+51A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.696+51A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.294+51A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+21527A>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+12856A>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-37336619-AGGGGGTTTGATTTGGATATCTGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37336619
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37336596
    reference: chr 3
allele count: 1
allele frequency: 8.717179817985285e-6
allele num: 114716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13156
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4457
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: AGGGGGTTTGATTTGGATATCTGC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

3-37337531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337531
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337531
    reference: chr 3
allele count: 1
allele frequency: 8.275405494869249e-6
allele num: 120840
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-47C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-47C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-47C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-47C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13768C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-47C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22439C>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27875
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-37337533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337533
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337533
    reference: chr 3
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-45C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13770C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-45C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-45C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-45C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22441C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-45C>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7460
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

3-37337537-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337537
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337538
    reference: chr 3
allele count: 125
allele frequency: 1.046095136076055e-3
allele num: 119492
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-33dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-33dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-33dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13782dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-33dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22453dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-33dupT
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27944
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6975
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-37337537-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337537
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337536
    reference: chr 3
allele count: 2
allele frequency: 1.673752217721688e-5
allele num: 119492
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-33delT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-33delT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22453delT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-33delT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-33delT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-33delT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13782delT
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27944
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6975
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40417
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: GT
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

3-37337546-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337546
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337546
    reference: chr 3
allele count: 4
allele frequency: 3.307808080975142e-5
allele num: 120926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22454G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-32G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-32G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-32G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13783G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-32G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-32G>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29391
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

3-37337548-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337548
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337549
    reference: chr 3
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-24dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-24dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22462dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-24dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13791dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-24dupT
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-24dupT
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7423
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-37337555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337555
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337555
    reference: chr 3
allele count: 90
allele frequency: 7.435435633912196e-4
allele num: 121042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-23C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-23C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13792C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22463C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-23C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-23C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-23C>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

3-37337558-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337558
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337558
    reference: chr 3
allele count: 2
allele frequency: 1.652073352056831e-5
allele num: 121060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13795A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-20A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-20A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-20A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-20A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22466A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-20A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

3-37337563-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337563
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337563
    reference: chr 3
allele count: 125
allele frequency: 1.032136605343991e-3
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-15G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22471G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-15G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13800G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-15G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-15G>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-15G>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 9.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

3-37337568-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337568
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337568
    reference: chr 3
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22476T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-10T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13805T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-10T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-10T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-10T>C
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-10T>C
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7472
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

3-37337571-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337571
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337571
    reference: chr 3
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-7A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13808A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22479A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-7A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-7A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-7A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-7A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
hgvs: c.748-7A>G
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-37337573-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337573
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337573
    reference: chr 3
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.295-5A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2003-5A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.748-5A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13810A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22481A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.682-5A>G
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.697-5A>G
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
hgvs: c.748-5A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

3-37337581-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337581
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337581
    reference: chr 3
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.700T>A
  hgvsp: ENSP00000387633.2:p.Ser234Thr
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13818T>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2006T>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.685T>A
  hgvsp: ENSP00000354486.2:p.Ser229Thr
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.751T>A
  hgvsp: ENSP00000349305.4:p.Ser251Thr
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.298T>A
  hgvsp: ENSP00000405842.1:p.Ser100Thr
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22489T>A
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser251Thr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-37337590-AAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337590
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337587
    reference: chr 3
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2019_2021delAAC
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22502_228+22504delAAC
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.713_715delAAC
  hgvsp: ENSP00000387633.2:p.Gln238del
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13831_477+13833delAAC
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.764_766delAAC
  hgvsp: ENSP00000349305.4:p.Gln255del
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.311_313delAAC
  hgvsp: ENSP00000405842.1:p.Gln104del
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.698_700delAAC
  hgvsp: ENSP00000354486.2:p.Gln233del
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln255del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: AAAC
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-37337602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337602
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337602
    reference: chr 3
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.319C>T
  hgvsp: ENSP00000405842.1:p.Arg107Ter
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.706C>T
  hgvsp: ENSP00000354486.2:p.Arg236Ter
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.772C>T
  hgvsp: ENSP00000349305.4:p.Arg258Ter
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2027C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22510C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13839C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.721C>T
  hgvsp: ENSP00000387633.2:p.Arg241Ter
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg258Ter
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

3-37337603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337603
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337603
    reference: chr 3
allele count: 3
allele frequency: 2.473573984597879e-5
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22511G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.773G>A
  hgvsp: ENSP00000349305.4:p.Arg258Gln
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.722G>A
  hgvsp: ENSP00000387633.2:p.Arg241Gln
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.707G>A
  hgvsp: ENSP00000354486.2:p.Arg236Gln
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13840G>A
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.320G>A
  hgvsp: ENSP00000405842.1:p.Arg107Gln
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2028G>A
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7485
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg258Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

3-37337612-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37337612
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37337612
    reference: chr 3
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000354486
  ensembl transcript: ENST00000361924
  gene symbol: GOLGA4
  hgvsc: ENST00000361924.2:c.716C>T
  hgvsp: ENSP00000354486.2:p.Pro239Leu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000405842
  ensembl transcript: ENST00000437131
  gene symbol: GOLGA4
  hgvsc: ENST00000437131.1:c.329C>T
  hgvsp: ENSP00000405842.1:p.Pro110Leu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000349305
  ensembl transcript: ENST00000356847
  gene symbol: GOLGA4
  hgvsc: ENST00000356847.4:c.782C>T
  hgvsp: ENSP00000349305.4:p.Pro261Leu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144674
  ensembl transcript: ENST00000435830
  gene symbol: GOLGA4
  hgvsc: ENST00000435830.2:n.2037C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000403009
  ensembl transcript: ENST00000429018
  gene symbol: GOLGA4
  hgvsc: ENST00000429018.1:c.228+22520C>T
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000387633
  ensembl transcript: ENST00000450863
  gene symbol: GOLGA4
  hgvsc: ENST00000450863.2:c.731C>T
  hgvsp: ENSP00000387633.2:p.Pro244Leu
  variant of: http://identifiers.org/hgnc/4427
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144674
  ensembl protein: ENSP00000406894
  ensembl transcript: ENST00000444882
  gene symbol: GOLGA4
  hgvsc: ENST00000444882.1:c.477+13849C>T
  variant of: http://identifiers.org/hgnc/4427
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro261Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40325
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.335e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

FS
type: SiteQuality
SIO_000300: 2.369e0

MQRankSum
type: SiteQuality
SIO_000300: -1.716e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.072e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.79e-1

DP
type: SiteQuality
SIO_000300: 3.236109e6

GenotypeQuality
all individuals: 1421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7676
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40327
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.228954160009832e-4
allele num: 16274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.23436e6

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

FS
type: SiteQuality
SIO_000300: 2.397e0

QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40327
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.231321e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

QD
type: SiteQuality
SIO_000300: 5.49e0

VQSLOD
type: SiteQuality
SIO_000300: -1.576e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.69e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.56e-1

FS
type: SiteQuality
SIO_000300: 5.012e0

MQRankSum
type: SiteQuality
SIO_000300: -6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 45

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 45
allele frequency: 3.888696854476322e-3
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.544e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 3.213003e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 2150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469812630117973e-4
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15374
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.477e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.186035e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
all individuals: 1026
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66168
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.982032341784787e-5
allele num: 10018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.378e0

QD
type: SiteQuality
SIO_000300: 4.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.156e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 1.7981e1

MQ
type: SiteQuality
SIO_000300: 3.633e1

DP
type: SiteQuality
SIO_000300: 3.18596e6

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.073e0

GenotypeQuality
all individuals: 1048
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511258878645912e-5
allele num: 66170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.041e0

FS
type: SiteQuality
SIO_000300: 1.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.123e0

DP
type: SiteQuality
SIO_000300: 3.184921e6

MQ
type: SiteQuality
SIO_000300: 3.514e1

VQSLOD
type: SiteQuality
SIO_000300: -5.117e0

QD
type: SiteQuality
SIO_000300: 8.98e0

GenotypeQuality
all individuals: 40310
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 261
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 698
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variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
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variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.645401382243488e-5
allele num: 15048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.784e0

MQRankSum
type: SiteQuality
SIO_000300: -1.447e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.178482e6

VQSLOD
type: SiteQuality
SIO_000300: -4.302e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
all individuals: 241
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
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variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66022
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.001201441730076e-4
allele num: 9988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.916e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.176931e6

QD
type: SiteQuality
SIO_000300: 2.272e1

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.64e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.64e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1039
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variant carriers: 0

GenotypeQuality
all individuals: 40306
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515932450050026e-5
allele num: 65966
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

VQSLOD
type: SiteQuality
SIO_000300: 6.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.67e-1

FS
type: SiteQuality
SIO_000300: 4.057e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 3.175963e6

QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1071
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516714190377965e-5
allele num: 65932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.848e1

QD
type: SiteQuality
SIO_000300: 1.307e1

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 1.2234e1

DP
type: SiteQuality
SIO_000300: 3.1758e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.702e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.58e-1

GenotypeQuality
all individuals: 761
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9312
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.252344629235963e-5
allele num: 15994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66118
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.005408e6

VQSLOD
type: SiteQuality
SIO_000300: -3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 1.197e1

GenotypeQuality
all individuals: 1411
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 3154
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 9388
bin: 6.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.224324660774306e-5
allele num: 16066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5109391998066e-5
allele num: 66184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

FS
type: SiteQuality
SIO_000300: 4.007e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

DP
type: SiteQuality
SIO_000300: 2.014813e6

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.767e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.75e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5109391998066e-5
allele num: 66184
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 4.007e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.767e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

DP
type: SiteQuality
SIO_000300: 2.014813e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.225874735400324e-5
allele num: 16062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.209262954229397e-4
allele num: 66156
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.564e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -4.417e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.275e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 2.017561e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510437120502674e-5
allele num: 66206
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

DP
type: SiteQuality
SIO_000300: 2.018022e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

QD
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.797e0

VQSLOD
type: SiteQuality
SIO_000300: -9.248e-1

GenotypeQuality
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.532269760696157e-5
allele num: 66192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

QD
type: SiteQuality
SIO_000300: 4.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

DP
type: SiteQuality
SIO_000300: 2.019789e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: -3.943e0

FS
type: SiteQuality
SIO_000300: 2.702e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.672e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 7381
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variant carriers: 478

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 454
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 452
allele frequency: 4.594429762146778e-2
allele num: 9838
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.06317029696988e-5
allele num: 66202
num of homozygotes: 0

Latino
type: Population
allele count: 32
allele frequency: 2.768166089965398e-3
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.230529595015576e-5
allele num: 16050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

DP
type: SiteQuality
SIO_000300: 2.031614e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

FS
type: SiteQuality
SIO_000300: 9.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.36e-2

QD
type: SiteQuality
SIO_000300: 1.608e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.458e1

DP
type: SiteQuality
SIO_000300: 2.016941e6

MQ
type: SiteQuality
SIO_000300: 5.888e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017956843217142e-5
allele num: 66270
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.23e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 1.393e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.02101333654454e-5
allele num: 66434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.216e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3217
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 6.933210076265311e-4
allele num: 8654
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.364e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
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SIO_000300: 2.033233e6

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66506
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East Asian
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South Asian
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allele frequency: 6.077549532028686e-5
allele num: 16454
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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MQRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 9.813542688910697e-5
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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FS
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.788566953797964e-5
allele num: 10216
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele count: 0
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InbreedingCoeff
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 2.911e0

ReadPosRankSum
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SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
allele num: 906
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.650561190804874e-4
allele num: 66644
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
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SIO_000300: -6.820000000000001e-1

InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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Other
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South Asian
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MQRankSum
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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VQSLOD
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MQ
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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European (Non-Finnish)
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allele num: 66688
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East Asian
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European (Finnish)
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num of homozygotes: 0

South Asian
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Latino
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East Asian
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European (Finnish)
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Other
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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FS
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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QD
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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DP
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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allele frequency: 1.499655079331754e-5
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

East Asian
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Other
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African
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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QD
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DP
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ReadPosRankSum
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Latino
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Other
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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FS
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11574
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele num: 66668
num of homozygotes: 0

Other
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African
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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DP
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 3.000660145231951e-5
allele num: 66652
num of homozygotes: 0

European (Finnish)
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African
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East Asian
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Other
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South Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

MQ
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ClippingRankSum
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QD
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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African
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South Asian
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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QD
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FS
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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Latino
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South Asian
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Other
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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African
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Other
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.521051350693599e-5
allele num: 65744
num of homozygotes: 0

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MQ
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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Latino
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Other
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FS
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MQ
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ClippingRankSum
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MQRankSum
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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DP
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MQRankSum
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QD
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ClippingRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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VQSLOD
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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allele num: 64118
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East Asian
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QD
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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Other
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European (Finnish)
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African
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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Other
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VQSLOD
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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DP
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63712
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -3.551e0

BaseQRankSum
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SIO_000300: -1.531e0

MQ
type: SiteQuality
SIO_000300: 4.321e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
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SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.423e0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 1.740102e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63772
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

African
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allele count: 5
allele frequency: 5.198585984612185e-4
allele num: 9618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 1.727448e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2011
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607665348381081e-5
allele num: 62202
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.912e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 1.705288e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.522e0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 3.27e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.336332530731213e-5
allele num: 15782
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.273e0

DP
type: SiteQuality
SIO_000300: 1.704413e6

MQ
type: SiteQuality
SIO_000300: 3.996e1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 2.601e0

VQSLOD
type: SiteQuality
SIO_000300: -7.584e-1

QD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5904825524064e-5
allele num: 62874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.584e-1

MQ
type: SiteQuality
SIO_000300: 3.996e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.273e0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 2.601e0

QD
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.704413e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 328
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 2.432e0

DP
type: SiteQuality
SIO_000300: 1.774893e6

MQRankSum
type: SiteQuality
SIO_000300: 7.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 6.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
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Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
type: SiteQuality
SIO_000300: 1.683e1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.169e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 123

European (Non-Finnish)
type: Population
allele count: 81
allele frequency: 1.22965751760991e-3
allele num: 65872
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.985702938840349e-4
allele num: 10072
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European (Finnish)
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allele count: 5
allele frequency: 7.587253414264037e-4
allele num: 6590
num of homozygotes: 0

East Asian
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allele count: 9
allele frequency: 1.050420168067227e-3
allele num: 8568
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Other
type: Population
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allele frequency: 1.11358574610245e-3
allele num: 898
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 27
allele frequency: 2.36013986013986e-3
allele num: 11440
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
SIO_000300: 1.800595e6

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 171
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variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036191401505951e-5
allele num: 65872
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South Asian
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allele frequency: 0.0e0
allele num: 16052
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African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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Other
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

FS
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

DP
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SIO_000300: 1.800595e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele num: 6612
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East Asian
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allele num: 8640
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African
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allele count: 0
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allele num: 10134
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South Asian
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allele frequency: 6.066488716330988e-5
allele num: 16484
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Other
type: Population
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allele num: 906
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.003544182134919e-5
allele num: 66588
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.135e0

MQRankSum
type: SiteQuality
SIO_000300: -7.67e-1

DP
type: SiteQuality
SIO_000300: 1.777738e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: -3.698e-1

GenotypeQuality
all individuals: 1617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44059
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

FS
type: SiteQuality
SIO_000300: 1.294e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.92e-1

MQ
type: SiteQuality
SIO_000300: 6.04e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

DP
type: SiteQuality
SIO_000300: 1.778519e6

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 9.75e1
variant carriers: 90

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 425
bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.501875468867217e-5
allele num: 66650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 82
allele frequency: 8.075635217648218e-3
allele num: 10154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593809441466367e-4
allele num: 11566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.68e0

QD
type: SiteQuality
SIO_000300: 1.241e1

DP
type: SiteQuality
SIO_000300: 1.783118e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.367e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

DP
type: SiteQuality
SIO_000300: 1.778648e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e0

VQSLOD
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7454
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variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.635041802980734e-4
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.945797329143755e-4
allele num: 10184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 7.499175090740018e-4
allele num: 66674
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 63
allele frequency: 9.525249470819473e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

DP
type: SiteQuality
SIO_000300: 1.784444e6

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

QD
type: SiteQuality
SIO_000300: 1.174e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.492e0

FS
type: SiteQuality
SIO_000300: 1.382e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 1699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2774
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variant carriers: 1

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 44843
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.39e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.22e-1

FS
type: SiteQuality
SIO_000300: 3.432e0

DP
type: SiteQuality
SIO_000300: 1.778226e6

GenotypeQuality
all individuals: 1701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 44878
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variant carriers: 0

GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.778582e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

FS
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e0

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

FS
type: SiteQuality
SIO_000300: 4.391e0

DP
type: SiteQuality
SIO_000300: 1.778842e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

QD
type: SiteQuality
SIO_000300: 1.586e1

GenotypeQuality
all individuals: 44954
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.256e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.33e-1

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 1.779516e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e0

VQSLOD
type: SiteQuality
SIO_000300: 8.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1614
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GenotypeQuality
all individuals: 21
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.948558067030398e-4
allele num: 10264
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.78027e6

MQ
type: SiteQuality
SIO_000300: 5.816e1

VQSLOD
type: SiteQuality
SIO_000300: -1.052e0

FS
type: SiteQuality
SIO_000300: 1.9596e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.61e-1

QD
type: SiteQuality
SIO_000300: 1.739e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: -1.209e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.94325689856199e-4
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.780799e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 4.096e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 9.06e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 45019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 987
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592016588906169e-4
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

DP
type: SiteQuality
SIO_000300: 1.780717e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

FS
type: SiteQuality
SIO_000300: 1.776e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

QD
type: SiteQuality
SIO_000300: 1.354e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

GenotypeQuality
all individuals: 422
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7490
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0