5-11082862-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082862
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082862
    reference: chr 5
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2560G>C
  hgvsp: ENSP00000352661.2:p.Val854Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2071G>C
  hgvsp: ENSP00000421093.1:p.Val691Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1723G>C
  hgvsp: ENSP00000426887.1:p.Val575Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1819G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2734G>C
  hgvsp: ENSP00000307134.8:p.Val912Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1435G>C
  hgvsp: ENSP00000391155.2:p.Val479Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2461G>C
  hgvsp: ENSP00000426510.1:p.Val821Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1473G>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val912Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-11082863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082863
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082863
    reference: chr 5
allele count: 314
allele frequency: 2.586448328693102e-3
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1722G>A
  hgvsp: ENST00000503622.1:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2733G>A
  hgvsp: ENST00000304623.8:c.2733G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2070G>A
  hgvsp: ENST00000513588.1:c.2070G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2460G>A
  hgvsp: ENST00000511377.1:c.2460G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1434G>A
  hgvsp: ENST00000458100.2:c.1434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2559G>A
  hgvsp: ENST00000359640.2:c.2559G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1818G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1472G>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12500
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 9.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 28745
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12039
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala911Ala
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-11082864-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082864
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082864
    reference: chr 5
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1433C>T
  hgvsp: ENSP00000391155.2:p.Ala478Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2732C>T
  hgvsp: ENSP00000307134.8:p.Ala911Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1721C>T
  hgvsp: ENSP00000426887.1:p.Ala574Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1817C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2069C>T
  hgvsp: ENSP00000421093.1:p.Ala690Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2459C>T
  hgvsp: ENSP00000426510.1:p.Ala820Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1471C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2558C>T
  hgvsp: ENSP00000352661.2:p.Ala853Val
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala911Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

5-11082866-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082866
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082866
    reference: chr 5
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2730C>T
  hgvsp: ENST00000304623.8:c.2730C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2457C>T
  hgvsp: ENST00000511377.1:c.2457C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2067C>T
  hgvsp: ENST00000513588.1:c.2067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1469C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1719C>T
  hgvsp: ENST00000503622.1:c.1719C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1431C>T
  hgvsp: ENST00000458100.2:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2556C>T
  hgvsp: ENST00000359640.2:c.2556C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1815C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9647
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys910Cys
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-11082872-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082872
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082872
    reference: chr 5
allele count: 27
allele frequency: 2.223942803485825e-4
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2061G>T
  hgvsp: ENST00000513588.1:c.2061G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1713G>T
  hgvsp: ENST00000503622.1:c.1713G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1809G>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2724G>T
  hgvsp: ENST00000304623.8:c.2724G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2451G>T
  hgvsp: ENST00000511377.1:c.2451G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1463G>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1425G>T
  hgvsp: ENST00000458100.2:c.1425G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2550G>T
  hgvsp: ENST00000359640.2:c.2550G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val908Val
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

5-11082874-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082874
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082874
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1423G>C
  hgvsp: ENSP00000391155.2:p.Val475Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2449G>C
  hgvsp: ENSP00000426510.1:p.Val817Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1711G>C
  hgvsp: ENSP00000426887.1:p.Val571Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2722G>C
  hgvsp: ENSP00000307134.8:p.Val908Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2548G>C
  hgvsp: ENSP00000352661.2:p.Val850Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2059G>C
  hgvsp: ENSP00000421093.1:p.Val687Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1461G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1807G>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val908Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

5-11082876-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082876
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082876
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1805G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2720G>C
  hgvsp: ENSP00000307134.8:p.Arg907Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1421G>C
  hgvsp: ENSP00000391155.2:p.Arg474Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1459G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2057G>C
  hgvsp: ENSP00000421093.1:p.Arg686Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1709G>C
  hgvsp: ENSP00000426887.1:p.Arg570Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2447G>C
  hgvsp: ENSP00000426510.1:p.Arg816Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2546G>C
  hgvsp: ENSP00000352661.2:p.Arg849Pro
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg907Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

5-11082876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082876
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082876
    reference: chr 5
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2546G>A
  hgvsp: ENSP00000352661.2:p.Arg849His
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1709G>A
  hgvsp: ENSP00000426887.1:p.Arg570His
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1805G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2057G>A
  hgvsp: ENSP00000421093.1:p.Arg686His
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1459G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2447G>A
  hgvsp: ENSP00000426510.1:p.Arg816His
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2720G>A
  hgvsp: ENSP00000307134.8:p.Arg907His
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1421G>A
  hgvsp: ENSP00000391155.2:p.Arg474His
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12093
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg907His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

5-11082877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082877
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082877
    reference: chr 5
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2545C>T
  hgvsp: ENSP00000352661.2:p.Arg849Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1420C>T
  hgvsp: ENSP00000391155.2:p.Arg474Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1804C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2719C>T
  hgvsp: ENSP00000307134.8:p.Arg907Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2056C>T
  hgvsp: ENSP00000421093.1:p.Arg686Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1708C>T
  hgvsp: ENSP00000426887.1:p.Arg570Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2446C>T
  hgvsp: ENSP00000426510.1:p.Arg816Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1458C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg907Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-11082878-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082878
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082878
    reference: chr 5
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2055C>G
  hgvsp: ENSP00000421093.1:p.Asp685Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1419C>G
  hgvsp: ENSP00000391155.2:p.Asp473Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2718C>G
  hgvsp: ENSP00000307134.8:p.Asp906Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2445C>G
  hgvsp: ENSP00000426510.1:p.Asp815Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1457C>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2544C>G
  hgvsp: ENSP00000352661.2:p.Asp848Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1803C>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1707C>G
  hgvsp: ENSP00000426887.1:p.Asp569Glu
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp906Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

5-11082884-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082884
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082884
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1797C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1451C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1701C>T
  hgvsp: ENST00000503622.1:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2538C>T
  hgvsp: ENST00000359640.2:c.2538C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2712C>T
  hgvsp: ENST00000304623.8:c.2712C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2439C>T
  hgvsp: ENST00000511377.1:c.2439C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2049C>T
  hgvsp: ENST00000513588.1:c.2049C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1413C>T
  hgvsp: ENST00000458100.2:c.1413C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp904Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

5-11082884-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082884
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082884
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1413C>A
  hgvsp: ENSP00000391155.2:p.Asp471Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2049C>A
  hgvsp: ENSP00000421093.1:p.Asp683Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1451C>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2538C>A
  hgvsp: ENSP00000352661.2:p.Asp846Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1701C>A
  hgvsp: ENSP00000426887.1:p.Asp567Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1797C>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2712C>A
  hgvsp: ENSP00000307134.8:p.Asp904Glu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2439C>A
  hgvsp: ENSP00000426510.1:p.Asp813Glu
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp904Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

5-11082887-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082887
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082887
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1410A>T
  hgvsp: ENST00000458100.2:c.1410A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2535A>T
  hgvsp: ENST00000359640.2:c.2535A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1794A>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2046A>T
  hgvsp: ENST00000513588.1:c.2046A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1448A>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2709A>T
  hgvsp: ENST00000304623.8:c.2709A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2436A>T
  hgvsp: ENST00000511377.1:c.2436A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1698A>T
  hgvsp: ENST00000503622.1:c.1698A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile903Ile
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

5-11082891-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082891
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082891
    reference: chr 5
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2042G>A
  hgvsp: ENSP00000421093.1:p.Arg681Gln
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1790G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1406G>A
  hgvsp: ENSP00000391155.2:p.Arg469Gln
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1694G>A
  hgvsp: ENSP00000426887.1:p.Arg565Gln
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2705G>A
  hgvsp: ENSP00000307134.8:p.Arg902Gln
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1444G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2531G>A
  hgvsp: ENSP00000352661.2:p.Arg844Gln
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2432G>A
  hgvsp: ENSP00000426510.1:p.Arg811Gln
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg902Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

5-11082892-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082892
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082892
    reference: chr 5
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2704C>T
  hgvsp: ENSP00000307134.8:p.Arg902Ter
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2041C>T
  hgvsp: ENSP00000421093.1:p.Arg681Ter
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1405C>T
  hgvsp: ENSP00000391155.2:p.Arg469Ter
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2431C>T
  hgvsp: ENSP00000426510.1:p.Arg811Ter
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2530C>T
  hgvsp: ENSP00000352661.2:p.Arg844Ter
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1693C>T
  hgvsp: ENSP00000426887.1:p.Arg565Ter
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1443C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1789C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg902Ter
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP

5-11082893-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082893
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082893
    reference: chr 5
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2430C>T
  hgvsp: ENST00000511377.1:c.2430C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2040C>T
  hgvsp: ENST00000513588.1:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1692C>T
  hgvsp: ENST00000503622.1:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1442C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1788C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2529C>T
  hgvsp: ENST00000359640.2:c.2529C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2703C>T
  hgvsp: ENST00000304623.8:c.2703C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1404C>T
  hgvsp: ENST00000458100.2:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu901Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

5-11082898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082898
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082898
    reference: chr 5
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1399C>T
  hgvsp: ENST00000458100.2:c.1399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1437C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1687C>T
  hgvsp: ENST00000503622.1:c.1687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2035C>T
  hgvsp: ENST00000513588.1:c.2035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2698C>T
  hgvsp: ENST00000304623.8:c.2698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2524C>T
  hgvsp: ENST00000359640.2:c.2524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1783C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2425C>T
  hgvsp: ENST00000511377.1:c.2425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu900Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

5-11082899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082899
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082899
    reference: chr 5
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2523G>A
  hgvsp: ENST00000359640.2:c.2523G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2697G>A
  hgvsp: ENST00000304623.8:c.2697G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1686G>A
  hgvsp: ENST00000503622.1:c.1686G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1782G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2424G>A
  hgvsp: ENST00000511377.1:c.2424G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2034G>A
  hgvsp: ENST00000513588.1:c.2034G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1436G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1398G>A
  hgvsp: ENST00000458100.2:c.1398G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu899Glu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-11082905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082905
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082905
    reference: chr 5
allele count: 5
allele frequency: 4.118751853438334e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1680C>T
  hgvsp: ENST00000503622.1:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2418C>T
  hgvsp: ENST00000511377.1:c.2418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1776C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1430C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2691C>T
  hgvsp: ENST00000304623.8:c.2691C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1392C>T
  hgvsp: ENST00000458100.2:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2517C>T
  hgvsp: ENST00000359640.2:c.2517C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2028C>T
  hgvsp: ENST00000513588.1:c.2028C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu897Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

5-11082910-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082910
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082910
    reference: chr 5
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2023A>G
  hgvsp: ENSP00000421093.1:p.Ile675Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2686A>G
  hgvsp: ENSP00000307134.8:p.Ile896Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1675A>G
  hgvsp: ENSP00000426887.1:p.Ile559Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1425A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2512A>G
  hgvsp: ENSP00000352661.2:p.Ile838Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1771A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2413A>G
  hgvsp: ENSP00000426510.1:p.Ile805Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1387A>G
  hgvsp: ENSP00000391155.2:p.Ile463Val
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile896Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

5-11082911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082911
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082911
    reference: chr 5
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2412C>T
  hgvsp: ENST00000511377.1:c.2412C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1770C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1424C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1674C>T
  hgvsp: ENST00000503622.1:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1386C>T
  hgvsp: ENST00000458100.2:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2685C>T
  hgvsp: ENST00000304623.8:c.2685C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2511C>T
  hgvsp: ENST00000359640.2:c.2511C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2022C>T
  hgvsp: ENST00000513588.1:c.2022C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12564
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro895Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

5-11082916-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082916
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082916
    reference: chr 5
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2680C>T
  hgvsp: ENST00000304623.8:c.2680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1669C>T
  hgvsp: ENST00000503622.1:c.1669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1381C>T
  hgvsp: ENST00000458100.2:c.1381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2017C>T
  hgvsp: ENST00000513588.1:c.2017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2407C>T
  hgvsp: ENST00000511377.1:c.2407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1419C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2506C>T
  hgvsp: ENST00000359640.2:c.2506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1765C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu894Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-11082920-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082920
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082920
    reference: chr 5
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1761A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2013A>G
  hgvsp: ENST00000513588.1:c.2013A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2502A>G
  hgvsp: ENST00000359640.2:c.2502A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1377A>G
  hgvsp: ENST00000458100.2:c.1377A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1415A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2403A>G
  hgvsp: ENST00000511377.1:c.2403A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1665A>G
  hgvsp: ENST00000503622.1:c.1665A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2676A>G
  hgvsp: ENST00000304623.8:c.2676A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys892Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

5-11082929-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082929
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082929
    reference: chr 5
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.2004A>G
  hgvsp: ENST00000513588.1:c.2004A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2667A>G
  hgvsp: ENST00000304623.8:c.2667A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1406A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2394A>G
  hgvsp: ENST00000511377.1:c.2394A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2493A>G
  hgvsp: ENST00000359640.2:c.2493A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1656A>G
  hgvsp: ENST00000503622.1:c.1656A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1752A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1368A>G
  hgvsp: ENST00000458100.2:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2967
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg889Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

5-11082936-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082936
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082936
    reference: chr 5
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1399C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1361C>T
  hgvsp: ENSP00000391155.2:p.Ala454Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1745C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2660C>T
  hgvsp: ENSP00000307134.8:p.Ala887Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1649C>T
  hgvsp: ENSP00000426887.1:p.Ala550Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2486C>T
  hgvsp: ENSP00000352661.2:p.Ala829Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1997C>T
  hgvsp: ENSP00000421093.1:p.Ala666Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2387C>T
  hgvsp: ENSP00000426510.1:p.Ala796Val
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala887Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-11082937-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082937
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082937
    reference: chr 5
allele count: 5
allele frequency: 4.128955539406752e-5
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2659G>T
  hgvsp: ENSP00000307134.8:p.Ala887Ser
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1648G>T
  hgvsp: ENSP00000426887.1:p.Ala550Ser
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1996G>T
  hgvsp: ENSP00000421093.1:p.Ala666Ser
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1398G>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2485G>T
  hgvsp: ENSP00000352661.2:p.Ala829Ser
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2386G>T
  hgvsp: ENSP00000426510.1:p.Ala796Ser
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1744G>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1360G>T
  hgvsp: ENSP00000391155.2:p.Ala454Ser
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala887Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

5-11082937-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082937
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082937
    reference: chr 5
allele count: 3
allele frequency: 2.477373323644051e-5
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1996G>A
  hgvsp: ENSP00000421093.1:p.Ala666Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2659G>A
  hgvsp: ENSP00000307134.8:p.Ala887Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2485G>A
  hgvsp: ENSP00000352661.2:p.Ala829Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2386G>A
  hgvsp: ENSP00000426510.1:p.Ala796Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1648G>A
  hgvsp: ENSP00000426887.1:p.Ala550Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1398G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1360G>A
  hgvsp: ENSP00000391155.2:p.Ala454Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1744G>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9499
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala887Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

5-11082938-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082938
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082938
    reference: chr 5
allele count: 8
allele frequency: 6.606874452868209e-5
allele num: 121086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1743C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1359C>T
  hgvsp: ENST00000458100.2:c.1359C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2658C>T
  hgvsp: ENST00000304623.8:c.2658C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2484C>T
  hgvsp: ENST00000359640.2:c.2484C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1995C>T
  hgvsp: ENST00000513588.1:c.1995C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2385C>T
  hgvsp: ENST00000511377.1:c.2385C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1397C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1647C>T
  hgvsp: ENST00000503622.1:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala886Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-11082938-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082938
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082938
    reference: chr 5
allele count: 5
allele frequency: 4.129296533042631e-5
allele num: 121086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2385C>A
  hgvsp: ENST00000511377.1:c.2385C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1359C>A
  hgvsp: ENST00000458100.2:c.1359C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2484C>A
  hgvsp: ENST00000359640.2:c.2484C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1995C>A
  hgvsp: ENST00000513588.1:c.1995C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1397C>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1743C>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1647C>A
  hgvsp: ENST00000503622.1:c.1647C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2658C>A
  hgvsp: ENST00000304623.8:c.2658C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala886Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

5-11082948-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082948
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082948
    reference: chr 5
allele count: 2
allele frequency: 1.654177625593436e-5
allele num: 120906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1733A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1637A>G
  hgvsp: ENSP00000426887.1:p.Tyr546Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2375A>G
  hgvsp: ENSP00000426510.1:p.Tyr792Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1985A>G
  hgvsp: ENSP00000421093.1:p.Tyr662Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1349A>G
  hgvsp: ENSP00000391155.2:p.Tyr450Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2648A>G
  hgvsp: ENSP00000307134.8:p.Tyr883Cys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1387A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2474A>G
  hgvsp: ENSP00000352661.2:p.Tyr825Cys
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11939
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28590
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr883Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

5-11082950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082950
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082950
    reference: chr 5
allele count: 1
allele frequency: 8.274994621253496e-6
allele num: 120846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2373A>G
  hgvsp: ENST00000511377.1:c.2373A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1635A>G
  hgvsp: ENST00000503622.1:c.1635A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1731A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2646A>G
  hgvsp: ENST00000304623.8:c.2646A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1983A>G
  hgvsp: ENST00000513588.1:c.1983A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2472A>G
  hgvsp: ENST00000359640.2:c.2472A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1347A>G
  hgvsp: ENST00000458100.2:c.1347A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1385A>G
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val882Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

5-11082952-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082952
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082952
    reference: chr 5
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2371G>C
  hgvsp: ENSP00000426510.1:p.Val791Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2470G>C
  hgvsp: ENSP00000352661.2:p.Val824Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2644G>C
  hgvsp: ENSP00000307134.8:p.Val882Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1729G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1383G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1981G>C
  hgvsp: ENSP00000421093.1:p.Val661Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1345G>C
  hgvsp: ENSP00000391155.2:p.Val449Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1633G>C
  hgvsp: ENSP00000426887.1:p.Val545Leu
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37266
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val882Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

5-11082954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082954
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082954
    reference: chr 5
allele count: 2
allele frequency: 1.656369569178275e-5
allele num: 120746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1381C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2642C>T
  hgvsp: ENSP00000307134.8:p.Ser881Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1631C>T
  hgvsp: ENSP00000426887.1:p.Ser544Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2468C>T
  hgvsp: ENSP00000352661.2:p.Ser823Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1979C>T
  hgvsp: ENSP00000421093.1:p.Ser660Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1727C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1343C>T
  hgvsp: ENSP00000391155.2:p.Ser448Leu
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2369C>T
  hgvsp: ENSP00000426510.1:p.Ser790Leu
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11794
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser881Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

5-11082963-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082963
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082963
    reference: chr 5
allele count: 1
allele frequency: 8.320436656515735e-6
allele num: 120186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-5T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-5T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-5T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-5T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-5T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-5T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-5T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-5T>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
hgvs: c.2638-5T>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

5-11082964-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082964
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082964
    reference: chr 5
allele count: 1
allele frequency: 8.320298199487469e-6
allele num: 120188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-6T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-6T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-6T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-6T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-6T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-6T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-6T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-6T>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 2.25e1
  variant carriers: 0
hgvs: c.2638-6T>C
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

5-11082972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082972
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082972
    reference: chr 5
allele count: 7
allele frequency: 5.863334059269931e-5
allele num: 119386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-14C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-14C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-14C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-14C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-14C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-14C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-14C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-14C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26177
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10651
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8425
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-11082976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082976
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082976
    reference: chr 5
allele count: 2
allele frequency: 1.680051073552636e-5
allele num: 119044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-18C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-18C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-18C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-18C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-18C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-18C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-18C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-18C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32697
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8082
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-11082977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082977
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082977
    reference: chr 5
allele count: 5
allele frequency: 4.206771218954028e-5
allele num: 118856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-19G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-19G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-19G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-19G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-19G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-19G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-19G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-19G>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24667
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

5-11082978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082978
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082978
    reference: chr 5
allele count: 10
allele frequency: 8.418217021634818e-5
allele num: 118790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-20C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-20C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-20C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-20C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-20C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-20C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-20C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-20C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24336
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31604
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

5-11082980-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082980
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082980
    reference: chr 5
allele count: 1
allele frequency: 8.42800795603951e-6
allele num: 118652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-22T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-22T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-22T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-22T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-22T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-22T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-22T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-22T>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

5-11082983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082983
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082983
    reference: chr 5
allele count: 1
allele frequency: 8.439530762089629e-6
allele num: 118490
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-25C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-25C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-25C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-25C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-25C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-25C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-25C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-25C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22139
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

5-11082984-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082984
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082984
    reference: chr 5
allele count: 4
allele frequency: 3.381405650328842e-5
allele num: 118294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-26G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-26G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-26G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-26G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-26G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-26G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-26G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-26G>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

5-11082985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082985
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082985
    reference: chr 5
allele count: 7
allele frequency: 5.923569034965982e-5
allele num: 118172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-27C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-27C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-27C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-27C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-27C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-27C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-27C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-27C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20732
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8221
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

5-11082991-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082991
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082991
    reference: chr 5
allele count: 30
allele frequency: 2.546905509805586e-4
allele num: 117790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-33T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-33T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-33T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-33T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-33T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-33T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-33T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-33T>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16466
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10006
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4745
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21797
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4744
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

5-11082995-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11082995
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11082995
    reference: chr 5
allele count: 5
allele frequency: 4.260685799986366e-5
allele num: 117352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-37C>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-37C>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-37C>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-37C>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-37C>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-37C>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-37C>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-37C>G
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15713
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9980
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5532
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22040
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

5-11083003-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11083003
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11083003
    reference: chr 5
allele count: 1
allele frequency: 8.611484275429714e-6
allele num: 116124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1975-45G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-45G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-45G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-45G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-45G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-45G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-45G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-45G>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

5-11084010-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11084010
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11084010
    reference: chr 5
allele count: 1
allele frequency: 3.427004797806717e-4
allele num: 2918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-1052G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1957G>C
  hgvsp: ENSP00000421093.1:p.Ala653Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-1052G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-1052G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-1052G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-1052G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-1052G>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-1052G>C
  variant of: http://identifiers.org/hgnc/2516
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala653Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-11084096-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11084096
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11084096
    reference: chr 5
allele count: 1
allele frequency: 5.341880341880342e-4
allele num: 1872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1377-1138T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1900-29T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1723-1138T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2638-1138T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2365-1138T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1627-1138T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2464-1138T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1339-1138T>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ

5-11098642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098642
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098642
    reference: chr 5
allele count: 2
allele frequency: 1.731931623339511e-5
allele num: 115478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1626+45C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1899+45C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12328C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1722+45C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1376+45C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1338+45C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2364+45C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2637+45C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9369
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17515
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22165
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

5-11098646-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098646
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098646
    reference: chr 5
allele count: 551
allele frequency: 4.760176929988251e-3
allele num: 115752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12324T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2637+41T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1626+41T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1722+41T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2364+41T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1899+41T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1338+41T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1376+41T>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17936
  bin: 2.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 4.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 3.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9476
  bin: 3.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14901
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4665
  bin: 9.75e1
  variant carriers: 532
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 9
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

5-11098647-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098647
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098647
    reference: chr 5
allele count: 1
allele frequency: 8.634236474468563e-6
allele num: 115818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1722+40A>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12323A>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1338+40A>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2364+40A>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1899+40A>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1626+40A>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2637+40A>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1376+40A>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3767
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

5-11098657-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098657
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098654
    reference: chr 5
allele count: 2
allele frequency: 1.71573673735502e-5
allele num: 116568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1626+27_1626+29delGAA
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1722+27_1722+29delGAA
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2364+27_2364+29delGAA
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1338+27_1338+29delGAA
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1899+27_1899+29delGAA
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1376+27_*1376+29delGAA
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12310_2463+12312delGAA
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2637+27_2637+29delGAA
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8543
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: TTTC
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

5-11098658-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098658
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098658
    reference: chr 5
allele count: 6
allele frequency: 5.143415570833405e-5
allele num: 116654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2364+29A>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1722+29A>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1626+29A>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2637+29A>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1899+29A>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1338+29A>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1376+29A>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12312A>C
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18908
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9797
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8557
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

5-11098668-TGTAATGAAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098668
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098659
    reference: chr 5
allele count: 1
allele frequency: 8.486370888353305e-6
allele num: 117836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 19368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8719
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: TGTAATGAAC
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

5-11098675-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098675
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098675
    reference: chr 5
allele count: 1
allele frequency: 8.391937026904549e-6
allele num: 119162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1722+12T>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1338+12T>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1899+12T>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2364+12T>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1626+12T>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12295T>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1376+12T>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2637+12T>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

5-11098719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098719
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098719
    reference: chr 5
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1344G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2605G>A
  hgvsp: ENSP00000307134.8:p.Ala869Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2332G>A
  hgvsp: ENSP00000426510.1:p.Ala778Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1594G>A
  hgvsp: ENSP00000426887.1:p.Ala532Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1306G>A
  hgvsp: ENSP00000391155.2:p.Ala436Thr
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1690G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12251G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1867G>A
  hgvsp: ENSP00000421093.1:p.Ala623Thr
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala869Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

5-11098720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098720
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098720
    reference: chr 5
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1866C>T
  hgvsp: ENST00000513588.1:c.1866C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2331C>T
  hgvsp: ENST00000511377.1:c.2331C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1689C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2604C>T
  hgvsp: ENST00000304623.8:c.2604C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1305C>T
  hgvsp: ENST00000458100.2:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1343C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12250C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1593C>T
  hgvsp: ENST00000503622.1:c.1593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly868Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

5-11098726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098726
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098726
    reference: chr 5
allele count: 6
allele frequency: 4.948127133879826e-5
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1683G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12244G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2598G>A
  hgvsp: ENST00000304623.8:c.2598G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1860G>A
  hgvsp: ENST00000513588.1:c.1860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1299G>A
  hgvsp: ENST00000458100.2:c.1299G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1587G>A
  hgvsp: ENST00000503622.1:c.1587G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1337G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2325G>A
  hgvsp: ENST00000511377.1:c.2325G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9238
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34358
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala866Ala
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

5-11098727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098727
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098727
    reference: chr 5
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1682C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1859C>T
  hgvsp: ENSP00000421093.1:p.Ala620Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1298C>T
  hgvsp: ENSP00000391155.2:p.Ala433Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12243C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1336C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2597C>T
  hgvsp: ENSP00000307134.8:p.Ala866Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2324C>T
  hgvsp: ENSP00000426510.1:p.Ala775Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1586C>T
  hgvsp: ENSP00000426887.1:p.Ala529Val
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala866Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

5-11098734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098734
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098734
    reference: chr 5
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1579G>A
  hgvsp: ENSP00000426887.1:p.Glu527Lys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2590G>A
  hgvsp: ENSP00000307134.8:p.Glu864Lys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1675G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2317G>A
  hgvsp: ENSP00000426510.1:p.Glu773Lys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1852G>A
  hgvsp: ENSP00000421093.1:p.Glu618Lys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1329G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1291G>A
  hgvsp: ENSP00000391155.2:p.Glu431Lys
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12236G>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu864Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

5-11098739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098739
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098739
    reference: chr 5
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2585C>T
  hgvsp: ENSP00000307134.8:p.Thr862Met
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1574C>T
  hgvsp: ENSP00000426887.1:p.Thr525Met
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12231C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1286C>T
  hgvsp: ENSP00000391155.2:p.Thr429Met
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1324C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2312C>T
  hgvsp: ENSP00000426510.1:p.Thr771Met
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1847C>T
  hgvsp: ENSP00000421093.1:p.Thr616Met
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1670C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34428
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr862Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

5-11098765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098765
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098765
    reference: chr 5
allele count: 10
allele frequency: 8.241984669908514e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1298G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2286G>A
  hgvsp: ENST00000511377.1:c.2286G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1821G>A
  hgvsp: ENST00000513588.1:c.1821G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1260G>A
  hgvsp: ENST00000458100.2:c.1260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1644G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1548G>A
  hgvsp: ENST00000503622.1:c.1548G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2559G>A
  hgvsp: ENST00000304623.8:c.2559G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12205G>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21895
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu853Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

5-11098767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098767
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098767
    reference: chr 5
allele count: 2
allele frequency: 1.648451280022419e-5
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2557C>T
  hgvsp: ENST00000304623.8:c.2557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1642C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1819C>T
  hgvsp: ENST00000513588.1:c.1819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12203C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1258C>T
  hgvsp: ENST00000458100.2:c.1258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2284C>T
  hgvsp: ENST00000511377.1:c.2284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1546C>T
  hgvsp: ENST00000503622.1:c.1546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1296C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu853Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

5-11098777-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098777
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098777
    reference: chr 5
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1248C>A
  hgvsp: ENST00000458100.2:c.1248C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2274C>A
  hgvsp: ENST00000511377.1:c.2274C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1632C>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1536C>A
  hgvsp: ENST00000503622.1:c.1536C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1809C>A
  hgvsp: ENST00000513588.1:c.1809C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2547C>A
  hgvsp: ENST00000304623.8:c.2547C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1286C>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12193C>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro849Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-11098788-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098788
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098788
    reference: chr 5
allele count: 16
allele frequency: 1.318652337311268e-4
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2536A>G
  hgvsp: ENSP00000307134.8:p.Ile846Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1525A>G
  hgvsp: ENSP00000426887.1:p.Ile509Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1798A>G
  hgvsp: ENSP00000421093.1:p.Ile600Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1621A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2263A>G
  hgvsp: ENSP00000426510.1:p.Ile755Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12182A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1237A>G
  hgvsp: ENSP00000391155.2:p.Ile413Val
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1275A>G
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3983
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile846Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

5-11098789-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098789
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098789
    reference: chr 5
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1274A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12181A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2262A>G
  hgvsp: ENST00000511377.1:c.2262A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1620A>G
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1797A>G
  hgvsp: ENST00000513588.1:c.1797A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2535A>G
  hgvsp: ENST00000304623.8:c.2535A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1236A>G
  hgvsp: ENST00000458100.2:c.1236A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1524A>G
  hgvsp: ENST00000503622.1:c.1524A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser845Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-11098797-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098797
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098797
    reference: chr 5
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1228C>A
  hgvsp: ENSP00000391155.2:p.His410Asn
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1516C>A
  hgvsp: ENSP00000426887.1:p.His506Asn
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12173C>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2527C>A
  hgvsp: ENSP00000307134.8:p.His843Asn
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2254C>A
  hgvsp: ENSP00000426510.1:p.His752Asn
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1612C>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1789C>A
  hgvsp: ENSP00000421093.1:p.His597Asn
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1266C>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His843Asn
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

5-11098802-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098802
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098802
    reference: chr 5
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2522T>C
  hgvsp: ENSP00000307134.8:p.Leu841Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1511T>C
  hgvsp: ENSP00000426887.1:p.Leu504Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1261T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1607T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2249T>C
  hgvsp: ENSP00000426510.1:p.Leu750Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1784T>C
  hgvsp: ENSP00000421093.1:p.Leu595Pro
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12168T>C
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1223T>C
  hgvsp: ENSP00000391155.2:p.Leu408Pro
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu841Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

5-11098803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098803
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098803
    reference: chr 5
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2521C>T
  hgvsp: ENST00000304623.8:c.2521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1606C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1783C>T
  hgvsp: ENST00000513588.1:c.1783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1222C>T
  hgvsp: ENST00000458100.2:c.1222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1510C>T
  hgvsp: ENST00000503622.1:c.1510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1260C>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2248C>T
  hgvsp: ENST00000511377.1:c.2248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12167C>T
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3983
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4228
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu841Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

5-11098807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098807
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098807
    reference: chr 5
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1779G>A
  hgvsp: ENST00000513588.1:c.1779G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2244G>A
  hgvsp: ENST00000511377.1:c.2244G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1218G>A
  hgvsp: ENST00000458100.2:c.1218G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2517G>A
  hgvsp: ENST00000304623.8:c.2517G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1256G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1506G>A
  hgvsp: ENST00000503622.1:c.1506G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12163G>A
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1602G>A
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln839Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/5-11098830-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11098830
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 11098830
    reference: chr 5
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421000
  ensembl transcript: ENST00000504499
  gene symbol: CTNND2
  hgvsc: ENST00000504499.1:c.*1233G>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169862
  ensembl transcript: ENST00000495388
  gene symbol: CTNND2
  hgvsc: ENST00000495388.2:n.1579G>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000307134
  ensembl transcript: ENST00000304623
  gene symbol: CTNND2
  hgvsc: ENST00000304623.8:c.2494G>T
  hgvsp: ENSP00000307134.8:p.Ala832Ser
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000391155
  ensembl transcript: ENST00000458100
  gene symbol: CTNND2
  hgvsc: ENST00000458100.2:c.1195G>T
  hgvsp: ENSP00000391155.2:p.Ala399Ser
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426887
  ensembl transcript: ENST00000503622
  gene symbol: CTNND2
  hgvsc: ENST00000503622.1:c.1483G>T
  hgvsp: ENSP00000426887.1:p.Ala495Ser
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000426510
  ensembl transcript: ENST00000511377
  gene symbol: CTNND2
  hgvsc: ENST00000511377.1:c.2221G>T
  hgvsp: ENSP00000426510.1:p.Ala741Ser
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000352661
  ensembl transcript: ENST00000359640
  gene symbol: CTNND2
  hgvsc: ENST00000359640.2:c.2463+12140G>T
  variant of: http://identifiers.org/hgnc/2516
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169862
  ensembl protein: ENSP00000421093
  ensembl transcript: ENST00000513588
  gene symbol: CTNND2
  hgvsc: ENST00000513588.1:c.1756G>T
  hgvsp: ENSP00000421093.1:p.Ala586Ser
  variant of: http://identifiers.org/hgnc/2516
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala832Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3722
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.808857e6

VQSLOD
type: SiteQuality
SIO_000300: -3.58e-2

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

QD
type: SiteQuality
SIO_000300: 1.312e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.107e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 9.75e1
variant carriers: 312

GenotypeQuality
all individuals: 836
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 124
allele frequency: 1.858011927237855e-3
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.554941257774706e-3
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.405286343612335e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 165
allele frequency: 1.586233416650644e-2
allele num: 10402
num of homozygotes: 2

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.171e1

FS
type: SiteQuality
SIO_000300: 5.41e-1

DP
type: SiteQuality
SIO_000300: 1.81935e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

GenotypeQuality
all individuals: 1803
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9647
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

DP
type: SiteQuality
SIO_000300: 1.797634e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.249e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38030
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3495
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.496e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

DP
type: SiteQuality
SIO_000300: 1.797123e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.765e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 38037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3502
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 1803
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.574803149606299e-3
allele num: 16510
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.91e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.49e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.532e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 1.797893e6

QD
type: SiteQuality
SIO_000300: 1.157e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38051
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9655
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.406e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.75e-1

FS
type: SiteQuality
SIO_000300: 2.233e0

BaseQRankSum
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SIO_000300: -6.0e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

DP
type: SiteQuality
SIO_000300: 1.796387e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
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ClippingRankSum
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SIO_000300: -3.59e-1

BaseQRankSum
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SIO_000300: 1.59e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
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InbreedingCoeff
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DP
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QD
type: SiteQuality
SIO_000300: 1.002e1

ReadPosRankSum
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SIO_000300: 6.26e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Non-Finnish)
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allele count: 4
allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

DP
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SIO_000300: 1.796425e6

ReadPosRankSum
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SIO_000300: 6.26e-1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.967e1

ClippingRankSum
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SIO_000300: -3.59e-1

MQRankSum
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SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 4.567e0

QD
type: SiteQuality
SIO_000300: 1.002e1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.64e-1

DP
type: SiteQuality
SIO_000300: 1.796297e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.203e1

MQ
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: -1.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.796134e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -1.097e-1

MQRankSum
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SIO_000300: 1.27e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
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South Asian
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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DP
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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African
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South Asian
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Latino
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European (Finnish)
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allele count: 0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Other
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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FS
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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MQ
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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FS
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele num: 8652
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African
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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VQSLOD
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
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BaseQRankSum
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DP
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SIO_000300: 1.795139e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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allele num: 66732
num of homozygotes: 0

Other
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East Asian
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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FS
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ReadPosRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Other
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Latino
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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MQRankSum
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VQSLOD
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DP
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FS
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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East Asian
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South Asian
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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QD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.762e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

QD
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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SIO_000300: 9.05e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.007449237053947e-5
allele num: 66584
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: -4.51e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.782312e6

InbreedingCoeff
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SIO_000300: 1.0e-4

VQSLOD
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MQ
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SIO_000300: 6.0e1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.50558692779046e-5
allele num: 66584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.292e1

ClippingRankSum
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SIO_000300: -1.48e-1

DP
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 3.63901018922853e-4
allele num: 16488
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003995313767311e-5
allele num: 66578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: 6.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
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allele frequency: 5.818012566907144e-4
allele num: 8594
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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QD
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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FS
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66490
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East Asian
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allele frequency: 0.0e0
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African
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Latino
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 2
allele frequency: 3.037667071688943e-4
allele num: 6584
num of homozygotes: 0

QD
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66456
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African
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South Asian
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European (Finnish)
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East Asian
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Latino
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Other
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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African
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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QD
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SIO_000300: 1.699e1

VQSLOD
type: SiteQuality
SIO_000300: -1.064e0

FS
type: SiteQuality
SIO_000300: 4.002e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.194e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.442e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.31e-1

DP
type: SiteQuality
SIO_000300: 1.761945e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519756838905775e-4
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505842669557885e-5
allele num: 66408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.875e0

DP
type: SiteQuality
SIO_000300: 1.759694e6

VQSLOD
type: SiteQuality
SIO_000300: -5.827e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512767759893501e-5
allele num: 66104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.736724e6

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

FS
type: SiteQuality
SIO_000300: 8.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

VQSLOD
type: SiteQuality
SIO_000300: 6.41e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3261
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variant carriers: 1

GenotypeQuality
all individuals: 1601
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.544e0

QD
type: SiteQuality
SIO_000300: 1.493e1

DP
type: SiteQuality
SIO_000300: 1.736317e6

VQSLOD
type: SiteQuality
SIO_000300: -4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.701e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 577
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GenotypeQuality
all individuals: 22
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522487134983709e-5
allele num: 65682
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.265005265005265e-4
allele num: 11396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.464e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
type: SiteQuality
SIO_000300: 1.689601e6

GenotypeQuality
all individuals: 263
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 752
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 226
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.957330201605011e-4
allele num: 10218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.659191e6

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.275e0

VQSLOD
type: SiteQuality
SIO_000300: 8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.204238921001927e-4
allele num: 8304
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.819897689186806e-5
allele num: 11338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.585613402219437e-5
allele num: 65422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 1.727e1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.632999999999999e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.651184e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.880047040376323e-4
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.589822832838653e-5
allele num: 65362
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.829242450997704e-5
allele num: 11326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.707e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.640465e6

QD
type: SiteQuality
SIO_000300: 1.349e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29610
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GenotypeQuality
all individuals: 559
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.183527083848628e-5
allele num: 16172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.799e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.502e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.611967e6

QD
type: SiteQuality
SIO_000300: 1.367e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.535626535626536e-4
allele num: 6512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65226
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.808e0

QD
type: SiteQuality
SIO_000300: 7.48e0

MQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.277e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.421e0

DP
type: SiteQuality
SIO_000300: 1.591293e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4826
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.823182711198428e-5
allele num: 10180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.865207659786123e-4
allele num: 16084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.582096e6

GenotypeQuality
all individuals: 583
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5086
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.610986443699855e-5
allele num: 65062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.219809709685289e-4
allele num: 8198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.86312259346665e-4
allele num: 16102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

FS
type: SiteQuality
SIO_000300: 3.425e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

DP
type: SiteQuality
SIO_000300: 1.560314e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

GenotypeQuality
all individuals: 5319
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 5673
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3059
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 30
allele frequency: 1.868693160583032e-3
allele num: 16054
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11226
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.459e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

DP
type: SiteQuality
SIO_000300: 1.473375e6

GenotypeQuality
all individuals: 1893
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3203
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 5791
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5108
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.181998021760633e-4
allele num: 8088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.457712e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.033e0

QD
type: SiteQuality
SIO_000300: 1.111e1

VQSLOD
type: SiteQuality
SIO_000300: 7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
all individuals: 338
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6350
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12330
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5327
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56045190687223e-5
allele num: 64084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15758
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.247e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.243e1

VQSLOD
type: SiteQuality
SIO_000300: -7.25e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.391761e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.659574468085106e-3
allele num: 376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.285e-1

DP
type: SiteQuality
SIO_000300: 6.2441e4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQ
type: SiteQuality
SIO_000300: 5.609e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.07e-2

QD
type: SiteQuality
SIO_000300: 2.002e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.25e-1

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.219512195121951e-2
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e0

DP
type: SiteQuality
SIO_000300: 4.4617e4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.434e1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8013
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.100102303376012e-5
allele num: 64514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14224
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.138e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 4.529e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.573e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

DP
type: SiteQuality
SIO_000300: 1.552084e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 1191
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8095
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3730
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 714
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2172
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23916
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 304
allele frequency: 4.66973886328725e-2
allele num: 6510
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 224
allele frequency: 3.464488987874288e-3
allele num: 64656
num of homozygotes: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.642710472279261e-3
allele num: 9740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 8.101851851851851e-3
allele num: 864
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.569876e6

VQSLOD
type: SiteQuality
SIO_000300: 5.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.839e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 8198
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.975446428571428e-5
allele num: 14336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.569006e6

FS
type: SiteQuality
SIO_000300: 2.884e0

MQRankSum
type: SiteQuality
SIO_000300: -1.759e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.426e1

VQSLOD
type: SiteQuality
SIO_000300: -1.619e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.658e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.534212948757288e-4
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538414202639919e-5
allele num: 65002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.535e1

QD
type: SiteQuality
SIO_000300: 1.685e1

FS
type: SiteQuality
SIO_000300: 2.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: -1.767e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.608437e6

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.099480732440558e-4
allele num: 14636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65036
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

DP
type: SiteQuality
SIO_000300: 1.611469e6

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528210770829513e-5
allele num: 65436
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

FS
type: SiteQuality
SIO_000300: 1.354e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 1.638796e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: -6.409e0

QD
type: SiteQuality
SIO_000300: 3.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.265e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518187890933382e-5
allele num: 65868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.709e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.625e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.313e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

DP
type: SiteQuality
SIO_000300: 1.660545e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.83e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

QD
type: SiteQuality
SIO_000300: 9.02e0

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

FS
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.74e-1

DP
type: SiteQuality
SIO_000300: 1.691846e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.903e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.692144e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.000630044103088e-5
allele num: 66662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

FS
type: SiteQuality
SIO_000300: 2.505e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 1.693655e6

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.670019074041963e-5
allele num: 11534
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
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DP
type: SiteQuality
SIO_000300: 1.693633e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.412e0

FS
type: SiteQuality
SIO_000300: 7.094e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.022e1

VQSLOD
type: SiteQuality
SIO_000300: -5.489000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4235
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.033e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.605e0

MQRankSum
type: SiteQuality
SIO_000300: -3.09e-1

FS
type: SiteQuality
SIO_000300: 2.127e0

DP
type: SiteQuality
SIO_000300: 1.694054e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.383e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 8.75e1
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GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

DP
type: SiteQuality
SIO_000300: 1.694323e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 6.84e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

FS
type: SiteQuality
SIO_000300: 7.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.325e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-1

GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.246417013407304e-4
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.695474e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.807e0

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.148e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.570000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.166e0

DP
type: SiteQuality
SIO_000300: 1.695081e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.43e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.695239e6

FS
type: SiteQuality
SIO_000300: 8.999000000000001e0

QD
type: SiteQuality
SIO_000300: 1.163e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.769e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.992805755395684e-5
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.056935190793458e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.695976e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.17e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.117e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

DP
type: SiteQuality
SIO_000300: 1.695392e6

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.814e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 6.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.695538e6

QD
type: SiteQuality
SIO_000300: 7.64e0

MQRankSum
type: SiteQuality
SIO_000300: 2.42e0

VQSLOD
type: SiteQuality
SIO_000300: -1.029e0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2705
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: -1.126e0

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

QD
type: SiteQuality
SIO_000300: 9.67e0

FS
type: SiteQuality
SIO_000300: 6.65e0

DP
type: SiteQuality
SIO_000300: 1.695533e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 1116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3984
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4227
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1424
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34458
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.423e1

VQSLOD
type: SiteQuality
SIO_000300: -7.002e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.169e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.063e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.343e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.695468e6