3-37114268-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114268
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114268
    reference: chr 3
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.912+13A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2247A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2247A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1464+13A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1464+13A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2247A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2247A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36639
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

3-37114280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114280
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114280
    reference: chr 3
allele count: 1
allele frequency: 8.276638360563474e-6
allele num: 120822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2235G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.912+1G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1464+1G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1464+1G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2235G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2235G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2235G>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6000
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1464+1G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/3-37114282-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114282
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114282
    reference: chr 3
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.911G>T
  hgvsp: ENSP00000379705.2:p.Gly304Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2233G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1463G>T
  hgvsp: ENSP00000392217.1:p.Gly488Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2233G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1463G>T
  hgvsp: ENSP00000338727.4:p.Gly488Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2233G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2233G>T
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37398
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly488Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

3-37114283-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114283
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114283
    reference: chr 3
allele count: 5
allele frequency: 4.13633355393779e-5
allele num: 120880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1462G>C
  hgvsp: ENSP00000338727.4:p.Gly488Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2232G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2232G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2232G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.910G>C
  hgvsp: ENSP00000379705.2:p.Gly304Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1462G>C
  hgvsp: ENSP00000392217.1:p.Gly488Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2232G>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19148
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly488Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-37114285-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114285
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114286
    reference: chr 3
allele count: 4
allele frequency: 3.308191081116845e-5
allele num: 120912
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2229dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1459dupA
  hgvsp: ENSP00000392217.1:p.Ile487AsnfsTer15
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2229dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2229dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1459dupA
  hgvsp: ENSP00000338727.4:p.Ile487AsnfsTer15
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.907dupA
  hgvsp: ENSP00000379705.2:p.Ile303AsnfsTer17
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2229dupA
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile487AsnfsTer15
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-37114285-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114285
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114285
    reference: chr 3
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1460T>C
  hgvsp: ENSP00000392217.1:p.Ile487Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2230T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.908T>C
  hgvsp: ENSP00000379705.2:p.Ile303Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2230T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2230T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1460T>C
  hgvsp: ENSP00000338727.4:p.Ile487Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2230T>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6003
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37411
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile487Thr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-37114302-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114302
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114302
    reference: chr 3
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2213T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.891T>G
  hgvsp: ENST00000396428.2:c.891T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2213T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1443T>G
  hgvsp: ENST00000421307.1:c.1443T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2213T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1443T>G
  hgvsp: ENST00000336686.4:c.1443T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2213T>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu481Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

3-37114305-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114305
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114305
    reference: chr 3
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1440T>C
  hgvsp: ENST00000421307.1:c.1440T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2210T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.888T>C
  hgvsp: ENST00000396428.2:c.888T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1440T>C
  hgvsp: ENST00000336686.4:c.1440T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2210T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2210T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2210T>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5998
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu480Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

3-37114305-AAGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114305
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114302
    reference: chr 3
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1437_1439delACT
  hgvsp: ENSP00000392217.1:p.Leu481del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.885_887delACT
  hgvsp: ENSP00000379705.2:p.Leu297del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1437_1439delACT
  hgvsp: ENSP00000338727.4:p.Leu481del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2207_603+2209delACT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2207_675+2209delACT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2207_675+2209delACT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2207_208+2209delACT
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu481del
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: AAGT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

3-37114307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114307
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114307
    reference: chr 3
allele count: 1
allele frequency: 8.259957378619926e-6
allele num: 121066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2208C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1438C>T
  hgvsp: ENSP00000392217.1:p.Leu480Phe
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.886C>T
  hgvsp: ENSP00000379705.2:p.Leu296Phe
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2208C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2208C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1438C>T
  hgvsp: ENSP00000338727.4:p.Leu480Phe
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2208C>T
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu480Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-37114319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114319
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114319
    reference: chr 3
allele count: 2
allele frequency: 1.651773178507128e-5
allele num: 121082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2196C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2196C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1426C>T
  hgvsp: ENSP00000338727.4:p.Leu476Phe
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1426C>T
  hgvsp: ENSP00000392217.1:p.Leu476Phe
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.874C>T
  hgvsp: ENSP00000379705.2:p.Leu292Phe
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2196C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2196C>T
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu476Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

3-37114320-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114320
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114320
    reference: chr 3
allele count: 4
allele frequency: 3.303491790822899e-5
allele num: 121084
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2195C>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1425C>G
  hgvsp: ENSP00000338727.4:p.Asp475Glu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2195C>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1425C>G
  hgvsp: ENSP00000392217.1:p.Asp475Glu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2195C>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2195C>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.873C>G
  hgvsp: ENSP00000379705.2:p.Asp291Glu
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5999
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp475Glu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-37114326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114326
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114326
    reference: chr 3
allele count: 2
allele frequency: 1.652100645971353e-5
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2189G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1419G>A
  hgvsp: ENST00000336686.4:c.1419G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2189G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2189G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1419G>A
  hgvsp: ENST00000421307.1:c.1419G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.867G>A
  hgvsp: ENST00000396428.2:c.867G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2189G>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2685
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5996
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val473Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

3-37114331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114331
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114331
    reference: chr 3
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1414G>A
  hgvsp: ENSP00000338727.4:p.Glu472Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2184G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.862G>A
  hgvsp: ENSP00000379705.2:p.Glu288Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2184G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2184G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1414G>A
  hgvsp: ENSP00000392217.1:p.Glu472Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2184G>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5995
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu472Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

3-37114339-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114339
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114340
    reference: chr 3
allele count: 3
allele frequency: 2.479707725116133e-5
allele num: 120982
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2175dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1405dupA
  hgvsp: ENSP00000392217.1:p.Met469AsnfsTer7
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.853dupA
  hgvsp: ENSP00000379705.2:p.Met285AsnfsTer7
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2175dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2175dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2175dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1405dupA
  hgvsp: ENSP00000338727.4:p.Met469AsnfsTer7
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37629
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met469AsnfsTer7
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-37114340-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114340
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114340
    reference: chr 3
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1405A>G
  hgvsp: ENSP00000392217.1:p.Met469Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2175A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2175A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1405A>G
  hgvsp: ENSP00000338727.4:p.Met469Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.853A>G
  hgvsp: ENSP00000379705.2:p.Met285Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2175A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2175A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37628
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met469Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

3-37114340-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114340
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114340
    reference: chr 3
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1405A>C
  hgvsp: ENSP00000392217.1:p.Met469Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2175A>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.853A>C
  hgvsp: ENSP00000379705.2:p.Met285Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1405A>C
  hgvsp: ENSP00000338727.4:p.Met469Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2175A>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2175A>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2175A>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met469Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

3-37114342-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114342
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114342
    reference: chr 3
allele count: 4
allele frequency: 3.307042346677249e-5
allele num: 120954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2173C>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2173C>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1403C>A
  hgvsp: ENSP00000338727.4:p.Thr468Asn
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2173C>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.851C>A
  hgvsp: ENSP00000379705.2:p.Thr284Asn
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1403C>A
  hgvsp: ENSP00000392217.1:p.Thr468Asn
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2173C>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5993
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8247
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr468Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

3-37114346-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114346
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114347
    reference: chr 3
allele count: 2
allele frequency: 1.654341820106871e-5
allele num: 120894
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2168dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.846dupA
  hgvsp: ENSP00000379705.2:p.Asp283ArgfsTer9
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2168dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2168dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2168dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1398dupA
  hgvsp: ENSP00000392217.1:p.Asp467ArgfsTer9
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1398dupA
  hgvsp: ENSP00000338727.4:p.Asp467ArgfsTer9
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5990
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp467ArgfsTer9
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

3-37114349-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114349
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114349
    reference: chr 3
allele count: 2
allele frequency: 1.654533421575116e-5
allele num: 120880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.844A>G
  hgvsp: ENSP00000379705.2:p.Ile282Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2166A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2166A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2166A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1396A>G
  hgvsp: ENSP00000392217.1:p.Ile466Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1396A>G
  hgvsp: ENSP00000338727.4:p.Ile466Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2166A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5988
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8234
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile466Val
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-37114357-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114357
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114357
    reference: chr 3
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.836A>C
  hgvsp: ENSP00000379705.2:p.Gln279Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2158A>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1388A>C
  hgvsp: ENSP00000338727.4:p.Gln463Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1388A>C
  hgvsp: ENSP00000392217.1:p.Gln463Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2158A>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2158A>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2158A>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37230
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln463Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-37114363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114363
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114363
    reference: chr 3
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2152G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1382G>A
  hgvsp: ENSP00000392217.1:p.Arg461His
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.830G>A
  hgvsp: ENSP00000379705.2:p.Arg277His
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2152G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2152G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1382G>A
  hgvsp: ENSP00000338727.4:p.Arg461His
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2152G>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg461His
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

3-37114364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114364
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114364
    reference: chr 3
allele count: 3
allele frequency: 2.48752093663455e-5
allele num: 120602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2151C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2151C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2151C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1381C>T
  hgvsp: ENSP00000338727.4:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.829C>T
  hgvsp: ENSP00000379705.2:p.Arg277Cys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2151C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1381C>T
  hgvsp: ENSP00000392217.1:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37097
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8180
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg461Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP

3-37114379-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114379
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114379
    reference: chr 3
allele count: 3
allele frequency: 2.507103459802775e-5
allele num: 119660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-6C>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-6C>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2136C>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-6C>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2136C>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2136C>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2136C>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8740
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8053
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1372-6C>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

3-37114387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114387
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114387
    reference: chr 3
allele count: 2
allele frequency: 1.68061577762092e-5
allele num: 119004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-14C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-14C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2128C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2128C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-14C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2128C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2128C>T
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-37114389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114389
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114389
    reference: chr 3
allele count: 1
allele frequency: 8.419492809753141e-6
allele num: 118772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-16C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-16C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2126C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-16C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2126C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2126C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2126C>T
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-37114391-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114391
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114391
    reference: chr 3
allele count: 3
allele frequency: 2.53173102889549e-5
allele num: 118496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-18T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2124T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2124T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-18T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-18T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2124T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2124T>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31261
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5971
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

3-37114400-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114400
    reference: chr 3
allele count: 2
allele frequency: 1.696554298220315e-5
allele num: 117886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-27T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-27T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2115T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-27T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2115T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2115T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2115T>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12801
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16795
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7010
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-37114402-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114402
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114402
    reference: chr 3
allele count: 1
allele frequency: 8.500221005746149e-6
allele num: 117644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2113A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2113A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-29A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-29A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2113A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-29A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2113A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5962
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/3-37114404-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114404
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114404
    reference: chr 3
allele count: 2
allele frequency: 1.706193482340897e-5
allele num: 117220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2111T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-31T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-31T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-31T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2111T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2111T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2111T>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5963
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6064
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/3-37114406-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114406
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114406
    reference: chr 3
allele count: 1
allele frequency: 8.532132009146445e-6
allele num: 117204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2109T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-33T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2109T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2109T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-33T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2109T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-33T>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4057
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5962
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6509
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

3-37114408-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114408
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114408
    reference: chr 3
allele count: 1
allele frequency: 8.541606163623007e-6
allele num: 117074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2107T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2107T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2107T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-35T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2107T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-35T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-35T>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13903
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5962
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-37114422-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37114422
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37114422
    reference: chr 3
allele count: 16
allele frequency: 1.390433815350389e-4
allele num: 115072
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1372-49C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.820-49C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+2093C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+2093C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1372-49C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+2093C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+2093C>T
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11219
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12682
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9632
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5972
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6059
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

3-37116467-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116467
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116467
    reference: chr 3
allele count: 1
allele frequency: 8.327920185212944e-6
allele num: 120078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+48T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.819+48T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+48T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+48T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1371+48T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+48T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1371+48T>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13971
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4006
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-37116472-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116472
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116473
    reference: chr 3
allele count: 8
allele frequency: 6.738771521951549e-5
allele num: 118716
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1371+42dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+42dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+42dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+42dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1371+42dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+42dupA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.819+42dupA
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17300
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10028
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10495
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3693
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-37116472-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116472
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116472
    reference: chr 3
allele count: 1
allele frequency: 8.423464402439436e-6
allele num: 118716
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10028
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10495
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6931
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21855
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10300
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11378
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15958
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.531628120692296e-5
  allele num: 65290
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-37116472-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116472
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116471
    reference: chr 3
allele count: 1284
allele frequency: 1.081572829273223e-2
allele num: 118716
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1371+42delA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+42delA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1371+42delA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+42delA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.819+42delA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+42delA
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+42delA
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 2.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 9.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10028
  bin: 3.25e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17300
  bin: 2.75e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.25e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 6931
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3693
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 19
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: AT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

3-37116473-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116473
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116473
    reference: chr 3
allele count: 1
allele frequency: 8.583985716247769e-6
allele num: 116496
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1371+42A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+42A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+42A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.819+42A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1371+42A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+42A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+42A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9730
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

3-37116502-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116502
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116502
    reference: chr 3
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.819+13A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+13A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+13A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1371+13A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+13A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1371+13A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+13A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29725
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-37116506-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116506
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116506
    reference: chr 3
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.819+9A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1371+9A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+9A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+9A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+9A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+9A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1371+9A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9539
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4077
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29781
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

3-37116508-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116508
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116508
    reference: chr 3
allele count: 2
allele frequency: 1.649348507339601e-5
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+7A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1371+7A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+7A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+7A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.819+7A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1371+7A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+7A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29797
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1371+7A>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

3-37116511-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116511
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116511
    reference: chr 3
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1371+4T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.819+4T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.675+4T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1371+4T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.675+4T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.208+4T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.603+4T>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9536
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1371+4T>C
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

3-37116517-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116517
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116517
    reference: chr 3
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1369G>A
  hgvsp: ENSP00000392217.1:p.Glu457Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1369G>A
  hgvsp: ENSP00000338727.4:p.Glu457Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.673G>A
  hgvsp: ENSP00000405480.1:p.Glu225Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.601G>A
  hgvsp: ENSP00000346349.4:p.Glu201Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.673G>A
  hgvsp: ENSP00000409574.1:p.Glu225Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.673G>A
  hgvsp: ENSP00000416364.2:p.Glu225Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.206G>A
  hgvsp: ENSP00000413026.2:p.Glu70Lys
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.817G>A
  hgvsp: ENSP00000379705.2:p.Glu273Lys
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu457Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-37116534-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116534
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116534
    reference: chr 3
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.800A>C
  hgvsp: ENSP00000379705.2:p.Gln267Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1352A>C
  hgvsp: ENSP00000392217.1:p.Gln451Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.189A>C
  hgvsp: ENSP00000413026.2:p.Gln64Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1352A>C
  hgvsp: ENSP00000338727.4:p.Gln451Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.656A>C
  hgvsp: ENSP00000405480.1:p.Gln219Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.584A>C
  hgvsp: ENSP00000346349.4:p.Gln195Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.656A>C
  hgvsp: ENSP00000409574.1:p.Gln219Pro
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.656A>C
  hgvsp: ENSP00000416364.2:p.Gln219Pro
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln451Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/3-37116537-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116537
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116537
    reference: chr 3
allele count: 2
allele frequency: 1.648315421639085e-5
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.186G>T
  hgvsp: ENSP00000413026.2:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.797G>T
  hgvsp: ENSP00000379705.2:p.Arg266Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.581G>T
  hgvsp: ENSP00000346349.4:p.Arg194Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.653G>T
  hgvsp: ENSP00000409574.1:p.Arg218Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1349G>T
  hgvsp: ENSP00000338727.4:p.Arg450Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1349G>T
  hgvsp: ENSP00000392217.1:p.Arg450Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.653G>T
  hgvsp: ENSP00000405480.1:p.Arg218Leu
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.653G>T
  hgvsp: ENSP00000416364.2:p.Arg218Leu
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg450Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

3-37116537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116537
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116537
    reference: chr 3
allele count: 3
allele frequency: 2.472473132458627e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.653G>A
  hgvsp: ENSP00000405480.1:p.Arg218Gln
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.581G>A
  hgvsp: ENSP00000346349.4:p.Arg194Gln
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.653G>A
  hgvsp: ENSP00000409574.1:p.Arg218Gln
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1349G>A
  hgvsp: ENSP00000338727.4:p.Arg450Gln
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.186G>A
  hgvsp: ENSP00000413026.2:p.Arg63Gln
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1349G>A
  hgvsp: ENSP00000392217.1:p.Arg450Gln
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.653G>A
  hgvsp: ENSP00000416364.2:p.Arg218Gln
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.797G>A
  hgvsp: ENSP00000379705.2:p.Arg266Gln
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg450Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-37116538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116538
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116538
    reference: chr 3
allele count: 22
allele frequency: 1.813206738535588e-4
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.580C>T
  hgvsp: ENSP00000346349.4:p.Arg194Trp
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.652C>T
  hgvsp: ENSP00000416364.2:p.Arg218Trp
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.796C>T
  hgvsp: ENSP00000379705.2:p.Arg266Trp
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.185C>T
  hgvsp: ENSP00000413026.2:p.Arg63Trp
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1348C>T
  hgvsp: ENSP00000392217.1:p.Arg450Trp
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.652C>T
  hgvsp: ENSP00000405480.1:p.Arg218Trp
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1348C>T
  hgvsp: ENSP00000338727.4:p.Arg450Trp
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.652C>T
  hgvsp: ENSP00000409574.1:p.Arg218Trp
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 19438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg450Trp
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-37116562-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116562
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116562
    reference: chr 3
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.161A>G
  hgvsp: ENSP00000413026.2:p.Met55Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.628A>G
  hgvsp: ENSP00000409574.1:p.Met210Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1324A>G
  hgvsp: ENSP00000392217.1:p.Met442Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.628A>G
  hgvsp: ENSP00000405480.1:p.Met210Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.772A>G
  hgvsp: ENSP00000379705.2:p.Met258Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1324A>G
  hgvsp: ENSP00000338727.4:p.Met442Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.556A>G
  hgvsp: ENSP00000346349.4:p.Met186Val
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.628A>G
  hgvsp: ENSP00000416364.2:p.Met210Val
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met442Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

3-37116571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116571
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116571
    reference: chr 3
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.763C>T
  hgvsp: ENSP00000379705.2:p.Gln255Ter
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.152C>T
  hgvsp: ENSP00000413026.2:p.Gln52Ter
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.619C>T
  hgvsp: ENSP00000405480.1:p.Gln207Ter
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.619C>T
  hgvsp: ENSP00000416364.2:p.Gln207Ter
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1315C>T
  hgvsp: ENSP00000392217.1:p.Gln439Ter
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.619C>T
  hgvsp: ENSP00000409574.1:p.Gln207Ter
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.547C>T
  hgvsp: ENSP00000346349.4:p.Gln183Ter
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1315C>T
  hgvsp: ENSP00000338727.4:p.Gln439Ter
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln439Ter
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-37116578-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116578
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116578
    reference: chr 3
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.612T>A
  hgvsp: ENSP00000416364.2:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1308T>A
  hgvsp: ENSP00000338727.4:p.Ser436Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.612T>A
  hgvsp: ENSP00000405480.1:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.612T>A
  hgvsp: ENSP00000409574.1:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.540T>A
  hgvsp: ENSP00000346349.4:p.Ser180Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.145T>A
  hgvsp: ENSP00000413026.2:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.756T>A
  hgvsp: ENSP00000379705.2:p.Ser252Arg
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1308T>A
  hgvsp: ENSP00000392217.1:p.Ser436Arg
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29867
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser436Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

3-37116585-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116585
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116585
    reference: chr 3
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.533T>C
  hgvsp: ENSP00000346349.4:p.Met178Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.605T>C
  hgvsp: ENSP00000409574.1:p.Met202Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.749T>C
  hgvsp: ENSP00000379705.2:p.Met250Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.605T>C
  hgvsp: ENSP00000416364.2:p.Met202Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.605T>C
  hgvsp: ENSP00000405480.1:p.Met202Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1301T>C
  hgvsp: ENSP00000338727.4:p.Met434Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.138T>C
  hgvsp: ENSP00000413026.2:p.Met47Thr
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1301T>C
  hgvsp: ENSP00000392217.1:p.Met434Thr
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4073
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met434Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

3-37116615-TAAAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116615
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116611
    reference: chr 3
allele count: 2
allele frequency: 1.652482855490374e-5
allele num: 121030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-12_583-9delGTTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-12_116-9delGTTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-12_583-9delGTTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-12_1279-9delGTTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-12_511-9delGTTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-12_727-9delGTTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-12_1279-9delGTTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-12_583-9delGTTT
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8038
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29064
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: TAAAC
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

3-37116619-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116619
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116619
    reference: chr 3
allele count: 48
allele frequency: 3.968975838859581e-4
allele num: 120938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-12G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-12G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-12G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-12G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-12G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-12G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-12G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-12G>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16921
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19151
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10024
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9559
  bin: 9.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

3-37116620-AAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116620
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116617
    reference: chr 3
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-16_583-14delATT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-16_116-14delATT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-16_583-14delATT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-16_511-14delATT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-16_583-14delATT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-16_1279-14delATT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-16_1279-14delATT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-16_727-14delATT
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: AAAT
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-37116627-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116627
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116627
    reference: chr 3
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-20T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-20T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-20T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-20T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-20T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-20T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-20T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-20T>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9522
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-37116637-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116637
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116637
    reference: chr 3
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-30G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-30G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-30G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-30G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-30G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-30G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-30G>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-30G>T
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22583
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9520
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

3-37116638-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116638
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116638
    reference: chr 3
allele count: 1
allele frequency: 8.300132802124834e-6
allele num: 120480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-31T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-31T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-31T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-31T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-31T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-31T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-31T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-31T>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17704
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

3-37116641-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116641
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116641
    reference: chr 3
allele count: 15
allele frequency: 1.245392049417157e-4
allele num: 120444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-34A>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-34A>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-34A>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-34A>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-34A>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-34A>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-34A>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-34A>T
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12804
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9471
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

3-37116644-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116644
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116644
    reference: chr 3
allele count: 10
allele frequency: 8.306613725848521e-5
allele num: 120386
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-37A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-37A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-37A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-37A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-37A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-37A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-37A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-37A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16611
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-37116651-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116651
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116651
    reference: chr 3
allele count: 1
allele frequency: 8.3301401129567e-6
allele num: 120046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-44G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-44G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-44G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-44G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-44G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-44G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-44G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-44G>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13355
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

3-37116659-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37116659
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37116659
    reference: chr 3
allele count: 1
allele frequency: 8.354637659364713e-6
allele num: 119694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.583-52A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.583-52A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.511-52A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.727-52A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1279-52A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.583-52A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1279-52A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.116-52A>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

3-37125084-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125084
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125084
    reference: chr 3
allele count: 3
allele frequency: 2.662832188315492e-5
allele num: 112662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.726+43G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.115+43G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.582+43G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.582+43G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1278+43G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.582+43G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.510+43G>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1278+43G>C
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21052
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-37125089-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125089
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125089
    reference: chr 3
allele count: 1
allele frequency: 8.849557522123894e-6
allele num: 113000
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1278+38T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.115+38T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.582+38T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1278+38T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.726+38T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.582+38T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.510+38T>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.582+38T>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

3-37125094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125094
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125094
    reference: chr 3
allele count: 22
allele frequency: 1.944699809065837e-4
allele num: 113128
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1278+33G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.115+33G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.582+33G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1278+33G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.582+33G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.510+33G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.582+33G>A
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.726+33G>A
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11533
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-37125105-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125105
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125103
    reference: chr 3
allele count: 1
allele frequency: 8.743704532736431e-6
allele num: 114368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.582+20_582+21delTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.510+20_510+21delTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.726+20_726+21delTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.582+20_582+21delTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.582+20_582+21delTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1278+20_1278+21delTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.115+20_115+21delTT
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1278+20_1278+21delTT
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7605
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7889
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: GAA
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-37125120-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125120
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125120
    reference: chr 3
allele count: 2
allele frequency: 1.713414320716892e-5
allele num: 116726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.582+7C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.510+7C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.582+7C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.726+7C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1278+7C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.582+7C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1278+7C>T
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.115+7C>T
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1278+7C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/3-37125122-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125122
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125122
    reference: chr 3
allele count: 5
allele frequency: 4.26373776307262e-5
allele num: 117268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.510+5T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1278+5T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.582+5T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.726+5T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.582+5T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1278+5T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.115+5T>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.582+5T>G
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1278+5T>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-37125135-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125135
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125132
    reference: chr 3
allele count: 1
allele frequency: 8.382229673093043e-6
allele num: 119300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1267_1269delGAA
  hgvsp: ENSP00000338727.4:p.Glu423del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000093167
  ensembl transcript: ENST00000481682
  gene symbol: LRRFIP2
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.499_501delGAA
  hgvsp: ENSP00000346349.4:p.Glu167del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.104_106delGAA
  hgvsp: ENSP00000413026.2:p.Glu36del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.715_717delGAA
  hgvsp: ENSP00000379705.2:p.Glu239del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.571_573delGAA
  hgvsp: ENSP00000416364.2:p.Glu191del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.571_573delGAA
  hgvsp: ENSP00000405480.1:p.Glu191del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.571_573delGAA
  hgvsp: ENSP00000409574.1:p.Glu191del
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1267_1269delGAA
  hgvsp: ENSP00000392217.1:p.Glu423del
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu423del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: TTTC
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ

3-37125139-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125139
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125139
    reference: chr 3
allele count: 1
allele frequency: 8.342510094437214e-6
allele num: 119868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.570A>G
  hgvsp: ENST00000440230.1:c.570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.498A>G
  hgvsp: ENST00000354379.4:c.498A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1266A>G
  hgvsp: ENST00000336686.4:c.1266A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.570A>G
  hgvsp: ENST00000416425.1:c.570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.570A>G
  hgvsp: ENST00000421276.2:c.570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.103A>G
  hgvsp: ENST00000440742.2:c.103A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000093167
  ensembl transcript: ENST00000481682
  gene symbol: LRRFIP2
  hgvsc: ENST00000481682.1:n.558A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.714A>G
  hgvsp: ENST00000396428.2:c.714A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1266A>G
  hgvsp: ENST00000421307.1:c.1266A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu422Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-37125140-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125140
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125140
    reference: chr 3
allele count: 1
allele frequency: 8.334583520861462e-6
allele num: 119982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.569A>G
  hgvsp: ENSP00000409574.1:p.Glu190Gly
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.569A>G
  hgvsp: ENSP00000416364.2:p.Glu190Gly
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000093167
  ensembl transcript: ENST00000481682
  gene symbol: LRRFIP2
  hgvsc: ENST00000481682.1:n.557A>G
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1265A>G
  hgvsp: ENSP00000392217.1:p.Glu422Gly
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.102A>G
  hgvsp: ENSP00000413026.2:p.Glu35Gly
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.497A>G
  hgvsp: ENSP00000346349.4:p.Glu166Gly
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.569A>G
  hgvsp: ENSP00000405480.1:p.Glu190Gly
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.713A>G
  hgvsp: ENSP00000379705.2:p.Glu238Gly
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1265A>G
  hgvsp: ENSP00000338727.4:p.Glu422Gly
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8017
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu422Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

3-37125154-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125154
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 37125154
    reference: chr 3
allele count: 1
allele frequency: 8.265282507356101e-6
allele num: 120988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000409574
  ensembl transcript: ENST00000416425
  gene symbol: LRRFIP2
  hgvsc: ENST00000416425.1:c.555T>C
  hgvsp: ENST00000416425.1:c.555T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000405480
  ensembl transcript: ENST00000440230
  gene symbol: LRRFIP2
  hgvsc: ENST00000440230.1:c.555T>C
  hgvsp: ENST00000440230.1:c.555T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000413026
  ensembl transcript: ENST00000440742
  gene symbol: LRRFIP2
  hgvsc: ENST00000440742.2:c.88T>C
  hgvsp: ENST00000440742.2:c.88T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000392217
  ensembl transcript: ENST00000421307
  gene symbol: LRRFIP2
  hgvsc: ENST00000421307.1:c.1251T>C
  hgvsp: ENST00000421307.1:c.1251T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000379705
  ensembl transcript: ENST00000396428
  gene symbol: LRRFIP2
  hgvsc: ENST00000396428.2:c.699T>C
  hgvsp: ENST00000396428.2:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000416364
  ensembl transcript: ENST00000421276
  gene symbol: LRRFIP2
  hgvsc: ENST00000421276.2:c.555T>C
  hgvsp: ENST00000421276.2:c.555T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000093167
  ensembl transcript: ENST00000481682
  gene symbol: LRRFIP2
  hgvsc: ENST00000481682.1:n.543T>C
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000346349
  ensembl transcript: ENST00000354379
  gene symbol: LRRFIP2
  hgvsc: ENST00000354379.4:c.483T>C
  hgvsp: ENST00000354379.4:c.483T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000093167
  ensembl protein: ENSP00000338727
  ensembl transcript: ENST00000336686
  gene symbol: LRRFIP2
  hgvsc: ENST00000336686.4:c.1251T>C
  hgvsp: ENST00000336686.4:c.1251T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6703
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe417Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

3-37125161-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37125161
    reference: chr 3
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
hgvs: p.Ala415Glu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6001
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.509479531457553e-5
allele num: 66248
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 1.905402e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 2.025e0

VQSLOD
type: SiteQuality
SIO_000300: -3.34e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.57e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504936190705514e-5
allele num: 66448
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.28e-1

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.94e-1

DP
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SIO_000300: 1.914814e6

MQ
type: SiteQuality
SIO_000300: 5.916e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504528631179851e-5
allele num: 66466
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10324
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South Asian
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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SIO_000300: 1.91571e6

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

FS
type: SiteQuality
SIO_000300: 7.07e0

QD
type: SiteQuality
SIO_000300: 8.470000000000001e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.521285237221336e-5
allele num: 66478
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.398e0

VQSLOD
type: SiteQuality
SIO_000300: -1.114e0

FS
type: SiteQuality
SIO_000300: 6.53e-1

DP
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SIO_000300: 1.916065e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.49e-1

QD
type: SiteQuality
SIO_000300: 6.6e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503804625703029e-5
allele num: 66498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.824373631719776e-4
allele num: 16444
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

QD
type: SiteQuality
SIO_000300: 7.05e0

DP
type: SiteQuality
SIO_000300: 1.917347e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503804625703029e-5
allele num: 66498
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.917347e6

MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 5.94e-1

ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Latino
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East Asian
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South Asian
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allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 906
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele num: 66566
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South Asian
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Latino
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European (Finnish)
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Other
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East Asian
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Latino
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East Asian
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South Asian
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African
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Other
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European (Non-Finnish)
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allele num: 66560
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1630
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37754
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.932367149758454e-4
allele num: 10350
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 1.341e1

DP
type: SiteQuality
SIO_000300: 1.919588e6

FS
type: SiteQuality
SIO_000300: 1.406e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.943e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.009615384615385e-5
allele num: 66560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

DP
type: SiteQuality
SIO_000300: 1.919546e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

GenotypeQuality
all individuals: 8263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005259203606311e-5
allele num: 66550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.919086e6

QD
type: SiteQuality
SIO_000300: 1.28e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

FS
type: SiteQuality
SIO_000300: 2.254e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.144e0

VQSLOD
type: SiteQuality
SIO_000300: -3.884e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

GenotypeQuality
all individuals: 2684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37707
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.823e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

QD
type: SiteQuality
SIO_000300: 1.074e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.235e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

DP
type: SiteQuality
SIO_000300: 1.918744e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

GenotypeQuality
all individuals: 322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8252
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variant carriers: 0

GenotypeQuality
all individuals: 2680
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5994
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1625
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006524157421605e-5
allele num: 66522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.383e1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

DP
type: SiteQuality
SIO_000300: 1.91799e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.019e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

GenotypeQuality
all individuals: 2350
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5993
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 1.917966e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 2.291e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37628
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5993
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 2.291e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.917966e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.641448131817127e-4
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.978e0

VQSLOD
type: SiteQuality
SIO_000300: 3.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

DP
type: SiteQuality
SIO_000300: 1.917891e6

QD
type: SiteQuality
SIO_000300: 1.092e1

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008242584682029e-5
allele num: 66484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.353e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 6.031e1

DP
type: SiteQuality
SIO_000300: 1.916619e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

QD
type: SiteQuality
SIO_000300: 1.542e1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

GenotypeQuality
all individuals: 428
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37535
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.321801718133271e-4
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.916342e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 8.464e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

QD
type: SiteQuality
SIO_000300: 1.404e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

GenotypeQuality
all individuals: 2669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 1619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5985
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.388e1

DP
type: SiteQuality
SIO_000300: 1.913803e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

FS
type: SiteQuality
SIO_000300: 2.421e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.414e0

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 966
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.911921e6

QD
type: SiteQuality
SIO_000300: 1.465e1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 1.244e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.721952167995334e-5
allele num: 10286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.098304671301378e-5
allele num: 16398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.71e-1

FS
type: SiteQuality
SIO_000300: 2.839e0

DP
type: SiteQuality
SIO_000300: 1.912201e6

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35022
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5984
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2286
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.044974269967419e-5
allele num: 65682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.323e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.544e0

DP
type: SiteQuality
SIO_000300: 1.890117e6

FS
type: SiteQuality
SIO_000300: 1.761e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.07e-1

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 659
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variant carriers: 0

GenotypeQuality
all individuals: 2560
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variant carriers: 0

GenotypeQuality
all individuals: 5977
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variant carriers: 2

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.752541184717841e-4
allele num: 11412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65210
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.289e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

DP
type: SiteQuality
SIO_000300: 1.868194e6

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5972
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 2546
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 954
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variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.828975820719482e-5
allele num: 10174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.858731e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.266e1

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 601
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GenotypeQuality
all individuals: 2160
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variant carriers: 0

GenotypeQuality
all individuals: 7388
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variant carriers: 0

GenotypeQuality
all individuals: 954
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variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.624776469137325e-5
allele num: 64868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.596e0

QD
type: SiteQuality
SIO_000300: 1.376e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.843342e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.98e-1

FS
type: SiteQuality
SIO_000300: 5.211e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 5966
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 201
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variant carriers: 0

GenotypeQuality
all individuals: 1567
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2089
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variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.397506593143131e-4
allele num: 8342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.797269e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

QD
type: SiteQuality
SIO_000300: 1.069e1

GenotypeQuality
all individuals: 2831
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
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GenotypeQuality
all individuals: 6818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 2468
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.912767644726408e-5
allele num: 10088
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 4.466e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

QD
type: SiteQuality
SIO_000300: 1.512e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

DP
type: SiteQuality
SIO_000300: 1.780892e6

GenotypeQuality
all individuals: 1979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2620
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4060
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variant carriers: 0

GenotypeQuality
all individuals: 879
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variant carriers: 0

GenotypeQuality
all individuals: 642
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variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21033
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.236858379715523e-4
allele num: 16170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

FS
type: SiteQuality
SIO_000300: 2.066e0

DP
type: SiteQuality
SIO_000300: 1.741282e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

MQRankSum
type: SiteQuality
SIO_000300: -8.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.99e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.187353050365054e-5
allele num: 16162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

DP
type: SiteQuality
SIO_000300: 1.739347e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.226e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.677e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.278e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2881
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4240
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563526063979486e-5
allele num: 63958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.346e0

MQRankSum
type: SiteQuality
SIO_000300: -1.197e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

QD
type: SiteQuality
SIO_000300: 1.915e1

DP
type: SiteQuality
SIO_000300: 1.731789e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

GenotypeQuality
all individuals: 5650
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5003
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5890
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.000750562922192e-3
allele num: 15988
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.672744e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9518
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2818
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5148760831364e-5
allele num: 66012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -3.125e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 1.942069e6

GenotypeQuality
all individuals: 248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 326
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2850
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6931
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.708737864077671e-5
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.072139684484607e-4
allele num: 65290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.029e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.991342e6

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.51e0

QD
type: SiteQuality
SIO_000300: 1.184e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

MQ
type: SiteQuality
SIO_000300: 6.029e1

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 1.991342e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

QD
type: SiteQuality
SIO_000300: 1.184e1

GenotypeQuality
all individuals: 21855
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 905
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1602
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 758
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10495
bin: 9.75e1
variant carriers: 1241

GenotypeQuality
all individuals: 2850
bin: 7.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 161
allele frequency: 2.483035163479334e-2
allele num: 6484
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1080
allele frequency: 1.65415837034768e-2
allele num: 65290
num of homozygotes: 18

African
type: Population
allele count: 19
allele frequency: 1.844660194174757e-3
allele num: 10300
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.187084520417854e-4
allele num: 8424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15958
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.406222534716119e-3
allele num: 11378
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 7.936507936507936e-3
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.51e0

DP
type: SiteQuality
SIO_000300: 1.991342e6

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.184e1

MQ
type: SiteQuality
SIO_000300: 6.029e1

GenotypeQuality
all individuals: 294
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9258
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579180089697429e-5
allele num: 63324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 1.344e1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 1.941925e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e0

GenotypeQuality
all individuals: 1287
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9538
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2837
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.572e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.063e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.506e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.754e1

DP
type: SiteQuality
SIO_000300: 2.018688e6

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.62e0

FS
type: SiteQuality
SIO_000300: 3.839e0

DP
type: SiteQuality
SIO_000300: 2.019457e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.645e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999310158663508e-5
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

DP
type: SiteQuality
SIO_000300: 2.019797e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.32e0

FS
type: SiteQuality
SIO_000300: 2.813e0

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29823
bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.094e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 1.509e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

VQSLOD
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

DP
type: SiteQuality
SIO_000300: 2.020097e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.946e0

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

DP
type: SiteQuality
SIO_000300: 2.020441e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

QD
type: SiteQuality
SIO_000300: 1.057e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.766e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.020952e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.213e1

MQRankSum
type: SiteQuality
SIO_000300: -6.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.138e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

QD
type: SiteQuality
SIO_000300: 1.237e1

DP
type: SiteQuality
SIO_000300: 2.02124e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817520901490367e-4
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.02124e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 1.237e1

FS
type: SiteQuality
SIO_000300: 1.138e0

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 22

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.029201502483945e-4
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.504060825989287e-4
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.885170225043277e-4
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.477857639693948e-4
allele num: 8626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

DP
type: SiteQuality
SIO_000300: 2.022793e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 0.0e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.092e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

FS
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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QD
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.05913717886573e-5
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num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.006072265977274e-5
allele num: 66532
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.44e-1

QD
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BaseQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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SIO_000300: 0.0e0

DP
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VQSLOD
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SIO_000300: 2.35e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 37
allele frequency: 5.565416202881983e-4
allele num: 66482
num of homozygotes: 0

Latino
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allele frequency: 8.670019074041963e-4
allele num: 11534
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South Asian
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Other
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allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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QD
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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QD
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Latino
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66200
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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Other
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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ClippingRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 66202
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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QD
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16454
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East Asian
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European (Non-Finnish)
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allele num: 66176
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Other
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Latino
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.117e0

FS
type: SiteQuality
SIO_000300: 4.304e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

DP
type: SiteQuality
SIO_000300: 1.947566e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20417
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.054852320675105e-3
allele num: 8532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

DP
type: SiteQuality
SIO_000300: 1.933673e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.62e0

QD
type: SiteQuality
SIO_000300: 1.408e1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516760200212346e-5
allele num: 65930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.055e0

FS
type: SiteQuality
SIO_000300: 4.26e0

QD
type: SiteQuality
SIO_000300: 7.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.907528e6

VQSLOD
type: SiteQuality
SIO_000300: -2.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522348069662648e-5
allele num: 65688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.89896e6

MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

VQSLOD
type: SiteQuality
SIO_000300: -7.181999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.463e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.083e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 3.252e0

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 27185
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.102795618852586e-5
allele num: 64458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013581998783702e-4
allele num: 9866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.3142e1

VQSLOD
type: SiteQuality
SIO_000300: -3.751e0

DP
type: SiteQuality
SIO_000300: 1.949138e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 8.6e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548754801139884e-5
allele num: 64568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

QD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.848e1

FS
type: SiteQuality
SIO_000300: 1.5543e1

DP
type: SiteQuality
SIO_000300: 1.953748e6

VQSLOD
type: SiteQuality
SIO_000300: -2.623e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.165841584158416e-4
allele num: 64640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
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South Asian
type: Population
allele count: 8
allele frequency: 7.164606842199534e-4
allele num: 11166
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

QD
type: SiteQuality
SIO_000300: 1.641e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
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South Asian
type: Population
allele count: 1
allele frequency: 8.386447500838645e-5
allele num: 11924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.088e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.302e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

DP
type: SiteQuality
SIO_000300: 1.970434e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.053248656570591e-5
allele num: 65504
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.528e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 5
allele frequency: 4.889497359671426e-4
allele num: 10226
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

DP
type: SiteQuality
SIO_000300: 2.000826e6

FS
type: SiteQuality
SIO_000300: 2.228e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7967
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7895
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511441613010489e-5
allele num: 66162
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.967e1

FS
type: SiteQuality
SIO_000300: 2.052e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e0

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.241e0

DP
type: SiteQuality
SIO_000300: 2.02356e6

MQ
type: SiteQuality
SIO_000300: 5.674e1

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3374
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 2.029964e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 4.642e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.359e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.883e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50779530170984e-5
allele num: 66322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

QD
type: SiteQuality
SIO_000300: 1.666e1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

DP
type: SiteQuality
SIO_000300: 2.030973e6

GenotypeQuality
all individuals: 33300
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.129e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

DP
type: SiteQuality
SIO_000300: 2.043262e6

QD
type: SiteQuality
SIO_000300: 1.765e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0