1-44466908-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466908
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466908
    reference: chr 1
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.930G>A
  hgvsp: ENST00000475075.2:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1068G>A
  hgvsp: ENST00000537678.1:c.1068G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1263G>A
  hgvsp: ENST00000372306.3:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1263G>A
  hgvsp: ENST00000372310.3:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1320G>A
  hgvsp: ENST00000357730.2:c.1320G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1482G>A
  hgvsp: ENST00000360584.2:c.1482G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1068G>A
  hgvsp: ENST00000372307.3:c.1068G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 40300
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu494Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

1-44466916-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466916
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466916
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1060T>C
  hgvsp: ENSP00000442523.1:p.Trp354Arg
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1255T>C
  hgvsp: ENSP00000361380.3:p.Trp419Arg
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1474T>C
  hgvsp: ENSP00000353791.2:p.Trp492Arg
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1255T>C
  hgvsp: ENSP00000361384.3:p.Trp419Arg
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1312T>C
  hgvsp: ENSP00000350362.2:p.Trp438Arg
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1060T>C
  hgvsp: ENSP00000361381.3:p.Trp354Arg
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.922T>C
  hgvsp: ENSP00000434460.1:p.Trp308Arg
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40299
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp492Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

1-44466919-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466919
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466919
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1057G>A
  hgvsp: ENSP00000361381.3:p.Glu353Lys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1252G>A
  hgvsp: ENSP00000361380.3:p.Glu418Lys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.919G>A
  hgvsp: ENSP00000434460.1:p.Glu307Lys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1252G>A
  hgvsp: ENSP00000361384.3:p.Glu418Lys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1309G>A
  hgvsp: ENSP00000350362.2:p.Glu437Lys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1057G>A
  hgvsp: ENSP00000442523.1:p.Glu353Lys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1471G>A
  hgvsp: ENSP00000353791.2:p.Glu491Lys
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40299
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu491Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-44466926-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466926
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466926
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1302G>A
  hgvsp: ENST00000357730.2:c.1302G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1245G>A
  hgvsp: ENST00000372306.3:c.1245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1245G>A
  hgvsp: ENST00000372310.3:c.1245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1464G>A
  hgvsp: ENST00000360584.2:c.1464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1050G>A
  hgvsp: ENST00000537678.1:c.1050G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.912G>A
  hgvsp: ENST00000475075.2:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1050G>A
  hgvsp: ENST00000372307.3:c.1050G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val488Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-44466927-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466927
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466927
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1244T>C
  hgvsp: ENSP00000361380.3:p.Val415Ala
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1301T>C
  hgvsp: ENSP00000350362.2:p.Val434Ala
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1049T>C
  hgvsp: ENSP00000442523.1:p.Val350Ala
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1244T>C
  hgvsp: ENSP00000361384.3:p.Val415Ala
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1049T>C
  hgvsp: ENSP00000361381.3:p.Val350Ala
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1463T>C
  hgvsp: ENSP00000353791.2:p.Val488Ala
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.911T>C
  hgvsp: ENSP00000434460.1:p.Val304Ala
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8275
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val488Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

1-44466944-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466944
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466944
    reference: chr 1
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1032A>G
  hgvsp: ENST00000537678.1:c.1032A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1446A>G
  hgvsp: ENST00000360584.2:c.1446A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.894A>G
  hgvsp: ENST00000475075.2:c.894A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1227A>G
  hgvsp: ENST00000372310.3:c.1227A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1032A>G
  hgvsp: ENST00000372307.3:c.1032A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1284A>G
  hgvsp: ENST00000357730.2:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1227A>G
  hgvsp: ENST00000372306.3:c.1227A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr482Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

1-44466959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466959
    reference: chr 1
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1017G>A
  hgvsp: ENST00000372307.3:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1212G>A
  hgvsp: ENST00000372306.3:c.1212G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.879G>A
  hgvsp: ENST00000475075.2:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1431G>A
  hgvsp: ENST00000360584.2:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1017G>A
  hgvsp: ENST00000537678.1:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1212G>A
  hgvsp: ENST00000372310.3:c.1212G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1269G>A
  hgvsp: ENST00000357730.2:c.1269G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu477Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

1-44466962-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466962
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466962
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1014C>T
  hgvsp: ENST00000537678.1:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1266C>T
  hgvsp: ENST00000357730.2:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1014C>T
  hgvsp: ENST00000372307.3:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1428C>T
  hgvsp: ENST00000360584.2:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1209C>T
  hgvsp: ENST00000372310.3:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1209C>T
  hgvsp: ENST00000372306.3:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.876C>T
  hgvsp: ENST00000475075.2:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu476Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

1-44466968-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466968
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466968
    reference: chr 1
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1008C>T
  hgvsp: ENST00000537678.1:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1422C>T
  hgvsp: ENST00000360584.2:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.870C>T
  hgvsp: ENST00000475075.2:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1008C>T
  hgvsp: ENST00000372307.3:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1260C>T
  hgvsp: ENST00000357730.2:c.1260C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1203C>T
  hgvsp: ENST00000372310.3:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1203C>T
  hgvsp: ENST00000372306.3:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1422C>T
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

1-44466979-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466979
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466979
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1201-9A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1258-9A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1201-9A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.868-9A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1006-9A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1420-9A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1006-9A>G
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-44466982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466982
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466982
    reference: chr 1
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1420-12C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.868-12C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1006-12C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1258-12C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1201-12C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1006-12C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1201-12C>T
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40299
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS

1-44466983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466983
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466983
    reference: chr 1
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1201-13C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1258-13C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.868-13C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1006-13C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1420-13C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1006-13C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1201-13C>T
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

1-44466993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466993
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466993
    reference: chr 1
allele count: 3
allele frequency: 2.474349246148263e-5
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1201-23G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.868-23G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1006-23G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1420-23G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1258-23G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1201-23G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1006-23G>A
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40307
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-44466994-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466994
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466994
    reference: chr 1
allele count: 3
allele frequency: 2.474349246148263e-5
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1201-24C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1201-24C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1420-24C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1258-24C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.868-24C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1006-24C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1006-24C>T
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-44466997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44466997
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44466997
    reference: chr 1
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1006-27C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1258-27C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1201-27C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1201-27C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.868-27C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1006-27C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1420-27C>T
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

1-44467000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467000
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467000
    reference: chr 1
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1201-30G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1201-30G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1258-30G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1420-30G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1006-30G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.868-30G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1006-30G>A
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 4607
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genotype depth: GenotypeDepth
  all individuals: 417
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genotype depth: GenotypeDepth
  all individuals: 462
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 701
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 103
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genotype depth: GenotypeDepth
  all individuals: 1591
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genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 220
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 195
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 7128
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genotype quality: GenotypeQuality
  all individuals: 68
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genotype quality: GenotypeQuality
  all individuals: 1453
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genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40336
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

1-44467006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467006
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467006
    reference: chr 1
allele count: 5
allele frequency: 4.128069219464672e-5
allele num: 121122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.868-36G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1201-36G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1201-36G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1258-36G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1420-36G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1006-36G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1006-36G>A
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
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genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2084
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 2310
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-44467014-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467014
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467014
    reference: chr 1
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1420-44A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1006-44A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1201-44A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.868-44A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1006-44A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1258-44A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1201-44A>G
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 700
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 143
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genotype quality: GenotypeQuality
  all individuals: 2523
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 713
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-44467019-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467019
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467019
    reference: chr 1
allele count: 2
allele frequency: 1.652837922713299e-5
allele num: 121004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+43G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+43G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+43G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+43G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+43G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+43G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+43G>A
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-44467030-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467030
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467030
    reference: chr 1
allele count: 1
allele frequency: 8.273351534706709e-6
allele num: 120870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+32G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+32G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+32G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+32G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+32G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+32G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+32G>A
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40338
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-44467038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467038
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467038
    reference: chr 1
allele count: 524
allele frequency: 4.339185160649222e-3
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+24G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+24G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+24G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+24G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+24G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+24G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+24G>A
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40514
  bin: 9.75e1
  variant carriers: 514
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 9
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-44467039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467039
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467039
    reference: chr 1
allele count: 13
allele frequency: 1.076693722047375e-4
allele num: 120740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+23C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+23C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+23C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+23C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+23C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+23C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+23C>T
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-44467040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467040
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467040
    reference: chr 1
allele count: 4
allele frequency: 3.312190517198549e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+22C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+22C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+22C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+22C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+22C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+22C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+22C>T
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-44467041-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467041
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467041
    reference: chr 1
allele count: 1
allele frequency: 8.279927799029592e-6
allele num: 120774
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+21A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+21A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+21A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+21A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+21A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+21A>G
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+21A>G
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40373
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

1-44467045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467045
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467045
    reference: chr 1
allele count: 3
allele frequency: 2.485048292771823e-5
allele num: 120722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+17G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+17G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+17G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+17G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+17G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+17G>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+17G>A
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40374
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-44467046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467046
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467046
    reference: chr 1
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+16C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+16C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+16C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+16C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+16C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+16C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+16C>T
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-44467057-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467057
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467057
    reference: chr 1
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+5G>C
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+5G>C
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+5G>C
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+5G>C
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+5G>C
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+5G>C
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+5G>C
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1419+5G>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

1-44467058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467058
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467058
    reference: chr 1
allele count: 2
allele frequency: 1.657055743355207e-5
allele num: 120696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+4C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+4C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+4C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+4C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+4C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+4C>T
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+4C>T
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5895
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1419+4C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-44467058-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467058
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467058
    reference: chr 1
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1257+4C>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1200+4C>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1200+4C>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.1005+4C>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1419+4C>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.867+4C>A
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.1005+4C>A
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1419+4C>A
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS

1-44467086-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467086
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467086
    reference: chr 1
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.843T>C
  hgvsp: ENST00000475075.2:c.843T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1176T>C
  hgvsp: ENST00000372306.3:c.1176T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1233T>C
  hgvsp: ENST00000357730.2:c.1233T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.981T>C
  hgvsp: ENST00000372307.3:c.981T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1176T>C
  hgvsp: ENST00000372310.3:c.1176T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.981T>C
  hgvsp: ENST00000537678.1:c.981T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1395T>C
  hgvsp: ENST00000360584.2:c.1395T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40374
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu465Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

1-44467091-TGAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467091
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467088
    reference: chr 1
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.835_837delTTC
  hgvsp: ENSP00000434460.1:p.Phe279del
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1387_1389delTTC
  hgvsp: ENSP00000353791.2:p.Phe463del
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1225_1227delTTC
  hgvsp: ENSP00000350362.2:p.Phe409del
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.973_975delTTC
  hgvsp: ENSP00000442523.1:p.Phe325del
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1168_1170delTTC
  hgvsp: ENSP00000361384.3:p.Phe390del
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.973_975delTTC
  hgvsp: ENSP00000361381.3:p.Phe325del
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1168_1170delTTC
  hgvsp: ENSP00000361380.3:p.Phe390del
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe463del
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: TGAA
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-44467091-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467091
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467091
    reference: chr 1
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1228A>T
  hgvsp: ENSP00000350362.2:p.Met410Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1171A>T
  hgvsp: ENSP00000361380.3:p.Met391Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.976A>T
  hgvsp: ENSP00000442523.1:p.Met326Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1390A>T
  hgvsp: ENSP00000353791.2:p.Met464Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.976A>T
  hgvsp: ENSP00000361381.3:p.Met326Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.838A>T
  hgvsp: ENSP00000434460.1:p.Met280Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1171A>T
  hgvsp: ENSP00000361384.3:p.Met391Leu
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40375
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met464Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

1-44467097-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467097
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467097
    reference: chr 1
allele count: 1
allele frequency: 8.265282507356101e-6
allele num: 120988
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1384T>C
  hgvsp: ENSP00000353791.2:p.Phe462Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1165T>C
  hgvsp: ENSP00000361384.3:p.Phe389Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1222T>C
  hgvsp: ENSP00000350362.2:p.Phe408Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.832T>C
  hgvsp: ENSP00000434460.1:p.Phe278Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.970T>C
  hgvsp: ENSP00000361381.3:p.Phe324Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1165T>C
  hgvsp: ENSP00000361380.3:p.Phe389Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.970T>C
  hgvsp: ENSP00000442523.1:p.Phe324Leu
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe462Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-44467115-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467115
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467115
    reference: chr 1
allele count: 4
allele frequency: 3.302509907529722e-5
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.952C>A
  hgvsp: ENSP00000442523.1:p.Leu318Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.952C>A
  hgvsp: ENSP00000361381.3:p.Leu318Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1147C>A
  hgvsp: ENSP00000361384.3:p.Leu383Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1204C>A
  hgvsp: ENSP00000350362.2:p.Leu402Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1366C>A
  hgvsp: ENSP00000353791.2:p.Leu456Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1147C>A
  hgvsp: ENSP00000361380.3:p.Leu383Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.814C>A
  hgvsp: ENSP00000434460.1:p.Leu272Met
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40377
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8003
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu456Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

1-44467116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467116
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467116
    reference: chr 1
allele count: 1002
allele frequency: 8.272787318361955e-3
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.813G>A
  hgvsp: ENST00000475075.2:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.951G>A
  hgvsp: ENST00000372307.3:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1146G>A
  hgvsp: ENST00000372310.3:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1146G>A
  hgvsp: ENST00000372306.3:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1203G>A
  hgvsp: ENST00000357730.2:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1365G>A
  hgvsp: ENST00000360584.2:c.1365G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.951G>A
  hgvsp: ENST00000537678.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 7.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 8.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 5.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 6.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 5.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 320
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 6.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 3.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro455Pro
num of homozygotes: 10
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

1-44467117-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467117
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467117
    reference: chr 1
allele count: 5
allele frequency: 4.126502046745016e-5
allele num: 121168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.950C>T
  hgvsp: ENSP00000442523.1:p.Pro317Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.812C>T
  hgvsp: ENSP00000434460.1:p.Pro271Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1364C>T
  hgvsp: ENSP00000353791.2:p.Pro455Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1145C>T
  hgvsp: ENSP00000361384.3:p.Pro382Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1145C>T
  hgvsp: ENSP00000361380.3:p.Pro382Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1202C>T
  hgvsp: ENSP00000350362.2:p.Pro401Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.950C>T
  hgvsp: ENSP00000361381.3:p.Pro317Leu
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6477
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro455Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP

1-44467119-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467119
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467119
    reference: chr 1
allele count: 3
allele frequency: 2.475574333245313e-5
allele num: 121184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.948C>A
  hgvsp: ENST00000372307.3:c.948C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1362C>A
  hgvsp: ENST00000360584.2:c.1362C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.948C>A
  hgvsp: ENST00000537678.1:c.948C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.810C>A
  hgvsp: ENST00000475075.2:c.810C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1143C>A
  hgvsp: ENST00000372310.3:c.1143C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1143C>A
  hgvsp: ENST00000372306.3:c.1143C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1200C>A
  hgvsp: ENST00000357730.2:c.1200C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40494
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser454Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

1-44467130-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467130
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467130
    reference: chr 1
allele count: 3
allele frequency: 2.475002475002475e-5
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1189C>A
  hgvsp: ENSP00000350362.2:p.Leu397Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1132C>A
  hgvsp: ENSP00000361384.3:p.Leu378Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.937C>A
  hgvsp: ENSP00000442523.1:p.Leu313Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1351C>A
  hgvsp: ENSP00000353791.2:p.Leu451Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.799C>A
  hgvsp: ENSP00000434460.1:p.Leu267Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.937C>A
  hgvsp: ENSP00000361381.3:p.Leu313Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1132C>A
  hgvsp: ENSP00000361380.3:p.Leu378Ile
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40496
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8217
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu451Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

1-44467137-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467137
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467137
    reference: chr 1
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.930C>G
  hgvsp: ENST00000372307.3:c.930C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1125C>G
  hgvsp: ENST00000372310.3:c.1125C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1125C>G
  hgvsp: ENST00000372306.3:c.1125C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1182C>G
  hgvsp: ENST00000357730.2:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1344C>G
  hgvsp: ENST00000360584.2:c.1344C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.792C>G
  hgvsp: ENST00000475075.2:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.930C>G
  hgvsp: ENST00000537678.1:c.930C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu448Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

1-44467139-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467139
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467139
    reference: chr 1
allele count: 3
allele frequency: 2.47496163809461e-5
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1123C>T
  hgvsp: ENSP00000361384.3:p.Leu375Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.790C>T
  hgvsp: ENSP00000434460.1:p.Leu264Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.928C>T
  hgvsp: ENSP00000442523.1:p.Leu310Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1342C>T
  hgvsp: ENSP00000353791.2:p.Leu448Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1123C>T
  hgvsp: ENSP00000361380.3:p.Leu375Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1180C>T
  hgvsp: ENSP00000350362.2:p.Leu394Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.928C>T
  hgvsp: ENSP00000361381.3:p.Leu310Phe
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40498
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu448Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

1-44467140-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467140
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467140
    reference: chr 1
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.927C>T
  hgvsp: ENST00000372307.3:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1122C>T
  hgvsp: ENST00000372310.3:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.927C>T
  hgvsp: ENST00000537678.1:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1179C>T
  hgvsp: ENST00000357730.2:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1122C>T
  hgvsp: ENST00000372306.3:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.789C>T
  hgvsp: ENST00000475075.2:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1341C>T
  hgvsp: ENST00000360584.2:c.1341C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala447Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

1-44467146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467146
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467146
    reference: chr 1
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1116C>T
  hgvsp: ENST00000372310.3:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.921C>T
  hgvsp: ENST00000372307.3:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.921C>T
  hgvsp: ENST00000537678.1:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1173C>T
  hgvsp: ENST00000357730.2:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1116C>T
  hgvsp: ENST00000372306.3:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.783C>T
  hgvsp: ENST00000475075.2:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1335C>T
  hgvsp: ENST00000360584.2:c.1335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40500
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro445Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

1-44467157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467157
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467157
    reference: chr 1
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1324G>A
  hgvsp: ENSP00000353791.2:p.Val442Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1162G>A
  hgvsp: ENSP00000350362.2:p.Val388Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.772G>A
  hgvsp: ENSP00000434460.1:p.Val258Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.910G>A
  hgvsp: ENSP00000442523.1:p.Val304Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1105G>A
  hgvsp: ENSP00000361380.3:p.Val369Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1105G>A
  hgvsp: ENSP00000361384.3:p.Val369Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.910G>A
  hgvsp: ENSP00000361381.3:p.Val304Met
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40511
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val442Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

1-44467158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467158
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467158
    reference: chr 1
allele count: 6
allele frequency: 4.948616861587186e-5
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1323C>T
  hgvsp: ENST00000360584.2:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1104C>T
  hgvsp: ENST00000372310.3:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1104C>T
  hgvsp: ENST00000372306.3:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1161C>T
  hgvsp: ENST00000357730.2:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.771C>T
  hgvsp: ENST00000475075.2:c.771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.909C>T
  hgvsp: ENST00000372307.3:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.909C>T
  hgvsp: ENST00000537678.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe441Phe
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

1-44467159-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467159
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467159
    reference: chr 1
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1322T>C
  hgvsp: ENSP00000353791.2:p.Phe441Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1160T>C
  hgvsp: ENSP00000350362.2:p.Phe387Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1103T>C
  hgvsp: ENSP00000361380.3:p.Phe368Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.770T>C
  hgvsp: ENSP00000434460.1:p.Phe257Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.908T>C
  hgvsp: ENSP00000442523.1:p.Phe303Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1103T>C
  hgvsp: ENSP00000361384.3:p.Phe368Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.908T>C
  hgvsp: ENSP00000361381.3:p.Phe303Ser
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe441Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-44467163-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467163
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467163
    reference: chr 1
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1099G>A
  hgvsp: ENSP00000361380.3:p.Ala367Thr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1099G>A
  hgvsp: ENSP00000361384.3:p.Ala367Thr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1318G>A
  hgvsp: ENSP00000353791.2:p.Ala440Thr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.904G>A
  hgvsp: ENSP00000442523.1:p.Ala302Thr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.766G>A
  hgvsp: ENSP00000434460.1:p.Ala256Thr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1156G>A
  hgvsp: ENSP00000350362.2:p.Ala386Thr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.904G>A
  hgvsp: ENSP00000361381.3:p.Ala302Thr
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40512
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala440Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-44467164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467164
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467164
    reference: chr 1
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1098G>A
  hgvsp: ENST00000372306.3:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1317G>A
  hgvsp: ENST00000360584.2:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.903G>A
  hgvsp: ENST00000372307.3:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.765G>A
  hgvsp: ENST00000475075.2:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1098G>A
  hgvsp: ENST00000372310.3:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1155G>A
  hgvsp: ENST00000357730.2:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.903G>A
  hgvsp: ENST00000537678.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu439Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-44467166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467166
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467166
    reference: chr 1
allele count: 5
allele frequency: 4.123439278233189e-5
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.763C>T
  hgvsp: ENST00000475075.2:c.763C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.901C>T
  hgvsp: ENST00000537678.1:c.901C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1096C>T
  hgvsp: ENST00000372310.3:c.1096C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1153C>T
  hgvsp: ENST00000357730.2:c.1153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1315C>T
  hgvsp: ENST00000360584.2:c.1315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1096C>T
  hgvsp: ENST00000372306.3:c.1096C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.901C>T
  hgvsp: ENST00000372307.3:c.901C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40513
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu439Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

1-44467175-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467175
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467175
    reference: chr 1
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.754G>A
  hgvsp: ENSP00000434460.1:p.Gly252Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1087G>A
  hgvsp: ENSP00000361380.3:p.Gly363Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1087G>A
  hgvsp: ENSP00000361384.3:p.Gly363Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1144G>A
  hgvsp: ENSP00000350362.2:p.Gly382Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.892G>A
  hgvsp: ENSP00000442523.1:p.Gly298Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1306G>A
  hgvsp: ENSP00000353791.2:p.Gly436Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.892G>A
  hgvsp: ENSP00000361381.3:p.Gly298Ser
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly436Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

1-44467176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467176
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467176
    reference: chr 1
allele count: 5
allele frequency: 4.123303260708219e-5
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1086C>T
  hgvsp: ENST00000372306.3:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1143C>T
  hgvsp: ENST00000357730.2:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.891C>T
  hgvsp: ENST00000372307.3:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.891C>T
  hgvsp: ENST00000537678.1:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1086C>T
  hgvsp: ENST00000372310.3:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.753C>T
  hgvsp: ENST00000475075.2:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1305C>T
  hgvsp: ENST00000360584.2:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His435His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-44467189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467189
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467189
    reference: chr 1
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1073G>A
  hgvsp: ENSP00000361384.3:p.Arg358His
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1130G>A
  hgvsp: ENSP00000350362.2:p.Arg377His
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1073G>A
  hgvsp: ENSP00000361380.3:p.Arg358His
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.878G>A
  hgvsp: ENSP00000361381.3:p.Arg293His
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1292G>A
  hgvsp: ENSP00000353791.2:p.Arg431His
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.878G>A
  hgvsp: ENSP00000442523.1:p.Arg293His
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.740G>A
  hgvsp: ENSP00000434460.1:p.Arg247His
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg431His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-44467199-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467199
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467199
    reference: chr 1
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.730G>T
  hgvsp: ENSP00000434460.1:p.Asp244Tyr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1282G>T
  hgvsp: ENSP00000353791.2:p.Asp428Tyr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1063G>T
  hgvsp: ENSP00000361380.3:p.Asp355Tyr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1063G>T
  hgvsp: ENSP00000361384.3:p.Asp355Tyr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1120G>T
  hgvsp: ENSP00000350362.2:p.Asp374Tyr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.868G>T
  hgvsp: ENSP00000442523.1:p.Asp290Tyr
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.868G>T
  hgvsp: ENSP00000361381.3:p.Asp290Tyr
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp428Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/1-44467202-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467202
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467202
    reference: chr 1
allele count: 3
allele frequency: 2.473777953690877e-5
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.865G>T
  hgvsp: ENSP00000442523.1:p.Val289Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.727G>T
  hgvsp: ENSP00000434460.1:p.Val243Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1060G>T
  hgvsp: ENSP00000361380.3:p.Val354Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1060G>T
  hgvsp: ENSP00000361384.3:p.Val354Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.865G>T
  hgvsp: ENSP00000361381.3:p.Val289Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1117G>T
  hgvsp: ENSP00000350362.2:p.Val373Leu
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1279G>T
  hgvsp: ENSP00000353791.2:p.Val427Leu
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val427Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

1-44467202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467202
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467202
    reference: chr 1
allele count: 3
allele frequency: 2.473777953690877e-5
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.727G>A
  hgvsp: ENSP00000434460.1:p.Val243Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.865G>A
  hgvsp: ENSP00000442523.1:p.Val289Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1060G>A
  hgvsp: ENSP00000361384.3:p.Val354Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.865G>A
  hgvsp: ENSP00000361381.3:p.Val289Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1279G>A
  hgvsp: ENSP00000353791.2:p.Val427Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1117G>A
  hgvsp: ENSP00000350362.2:p.Val373Met
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1060G>A
  hgvsp: ENSP00000361380.3:p.Val354Met
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val427Met
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

1-44467203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467203
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467203
    reference: chr 1
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1059C>T
  hgvsp: ENST00000372306.3:c.1059C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1278C>T
  hgvsp: ENST00000360584.2:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1116C>T
  hgvsp: ENST00000357730.2:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.864C>T
  hgvsp: ENST00000372307.3:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.726C>T
  hgvsp: ENST00000475075.2:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.864C>T
  hgvsp: ENST00000537678.1:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1059C>T
  hgvsp: ENST00000372310.3:c.1059C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly426Gly
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

1-44467206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467206
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467206
    reference: chr 1
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1113G>A
  hgvsp: ENST00000357730.2:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.861G>A
  hgvsp: ENST00000372307.3:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1056G>A
  hgvsp: ENST00000372310.3:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1056G>A
  hgvsp: ENST00000372306.3:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1275G>A
  hgvsp: ENST00000360584.2:c.1275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.861G>A
  hgvsp: ENST00000537678.1:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.723G>A
  hgvsp: ENST00000475075.2:c.723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu425Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

1-44467209-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467209
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467209
    reference: chr 1
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1272C>G
  hgvsp: ENSP00000353791.2:p.His424Gln
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1053C>G
  hgvsp: ENSP00000361384.3:p.His351Gln
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.858C>G
  hgvsp: ENSP00000361381.3:p.His286Gln
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1110C>G
  hgvsp: ENSP00000350362.2:p.His370Gln
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.720C>G
  hgvsp: ENSP00000434460.1:p.His240Gln
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1053C>G
  hgvsp: ENSP00000361380.3:p.His351Gln
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.858C>G
  hgvsp: ENSP00000442523.1:p.His286Gln
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40522
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His424Gln
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

1-44467215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467215
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467215
    reference: chr 1
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.852C>T
  hgvsp: ENST00000372307.3:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1047C>T
  hgvsp: ENST00000372306.3:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1047C>T
  hgvsp: ENST00000372310.3:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.852C>T
  hgvsp: ENST00000537678.1:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.714C>T
  hgvsp: ENST00000475075.2:c.714C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1104C>T
  hgvsp: ENST00000357730.2:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1266C>T
  hgvsp: ENST00000360584.2:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala422Ala
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

1-44467224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467224
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467224
    reference: chr 1
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.705C>T
  hgvsp: ENST00000475075.2:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1038C>T
  hgvsp: ENST00000372310.3:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1257C>T
  hgvsp: ENST00000360584.2:c.1257C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.843C>T
  hgvsp: ENST00000537678.1:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.843C>T
  hgvsp: ENST00000372307.3:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1038C>T
  hgvsp: ENST00000372306.3:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1095C>T
  hgvsp: ENST00000357730.2:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly419Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

1-44467226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467226
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467226
    reference: chr 1
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.841G>A
  hgvsp: ENSP00000442523.1:p.Gly281Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1036G>A
  hgvsp: ENSP00000361384.3:p.Gly346Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.841G>A
  hgvsp: ENSP00000361381.3:p.Gly281Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1036G>A
  hgvsp: ENSP00000361380.3:p.Gly346Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.703G>A
  hgvsp: ENSP00000434460.1:p.Gly235Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1255G>A
  hgvsp: ENSP00000353791.2:p.Gly419Ser
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1093G>A
  hgvsp: ENSP00000350362.2:p.Gly365Ser
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly419Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-44467227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467227
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467227
    reference: chr 1
allele count: 2
allele frequency: 1.649675014022238e-5
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1035C>T
  hgvsp: ENST00000372306.3:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1254C>T
  hgvsp: ENST00000360584.2:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1092C>T
  hgvsp: ENST00000357730.2:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.840C>T
  hgvsp: ENST00000372307.3:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1035C>T
  hgvsp: ENST00000372310.3:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.840C>T
  hgvsp: ENST00000537678.1:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.702C>T
  hgvsp: ENST00000475075.2:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu418Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS

1-44467232-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467232
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467232
    reference: chr 1
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1030A>G
  hgvsp: ENSP00000361384.3:p.Ile344Val
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1030A>G
  hgvsp: ENSP00000361380.3:p.Ile344Val
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.835A>G
  hgvsp: ENSP00000442523.1:p.Ile279Val
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.697A>G
  hgvsp: ENSP00000434460.1:p.Ile233Val
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1249A>G
  hgvsp: ENSP00000353791.2:p.Ile417Val
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.835A>G
  hgvsp: ENSP00000361381.3:p.Ile279Val
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1087A>G
  hgvsp: ENSP00000350362.2:p.Ile363Val
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40521
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile417Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-44467244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467244
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467244
    reference: chr 1
allele count: 3
allele frequency: 2.477086945751796e-5
allele num: 121110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1075G>A
  hgvsp: ENSP00000350362.2:p.Val359Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.823G>A
  hgvsp: ENSP00000361381.3:p.Val275Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1018G>A
  hgvsp: ENSP00000361380.3:p.Val340Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.685G>A
  hgvsp: ENSP00000434460.1:p.Val229Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1018G>A
  hgvsp: ENSP00000361384.3:p.Val340Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.823G>A
  hgvsp: ENSP00000442523.1:p.Val275Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1237G>A
  hgvsp: ENSP00000353791.2:p.Val413Ile
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val413Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-44467245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467245
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467245
    reference: chr 1
allele count: 6
allele frequency: 4.95507399577167e-5
allele num: 121088
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1236C>T
  hgvsp: ENST00000360584.2:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.822C>T
  hgvsp: ENST00000372307.3:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1074C>T
  hgvsp: ENST00000357730.2:c.1074C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.684C>T
  hgvsp: ENST00000475075.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1017C>T
  hgvsp: ENST00000372310.3:c.1017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.822C>T
  hgvsp: ENST00000537678.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1017C>T
  hgvsp: ENST00000372306.3:c.1017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe412Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-44467255-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467255
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467255
    reference: chr 1
allele count: 2
allele frequency: 1.656067832538421e-5
allele num: 120768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1007A>G
  hgvsp: ENSP00000361384.3:p.Tyr336Cys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.812A>G
  hgvsp: ENSP00000361381.3:p.Tyr271Cys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1007A>G
  hgvsp: ENSP00000361380.3:p.Tyr336Cys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.812A>G
  hgvsp: ENSP00000442523.1:p.Tyr271Cys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1226A>G
  hgvsp: ENSP00000353791.2:p.Tyr409Cys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.674A>G
  hgvsp: ENSP00000434460.1:p.Tyr225Cys
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1064A>G
  hgvsp: ENSP00000350362.2:p.Tyr355Cys
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr409Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-44467259-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467259
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467259
    reference: chr 1
allele count: 2
allele frequency: 1.657797450307521e-5
allele num: 120642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1003G>T
  hgvsp: ENSP00000361384.3:p.Val335Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.808G>T
  hgvsp: ENSP00000442523.1:p.Val270Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.670G>T
  hgvsp: ENSP00000434460.1:p.Val224Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1003G>T
  hgvsp: ENSP00000361380.3:p.Val335Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1222G>T
  hgvsp: ENSP00000353791.2:p.Val408Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.808G>T
  hgvsp: ENSP00000361381.3:p.Val270Phe
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1060G>T
  hgvsp: ENSP00000350362.2:p.Val354Phe
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val408Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-44467259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467259
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467259
    reference: chr 1
allele count: 72
allele frequency: 5.968070821107078e-4
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.670G>A
  hgvsp: ENSP00000434460.1:p.Val224Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.808G>A
  hgvsp: ENSP00000361381.3:p.Val270Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1003G>A
  hgvsp: ENSP00000361380.3:p.Val335Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1003G>A
  hgvsp: ENSP00000361384.3:p.Val335Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1222G>A
  hgvsp: ENSP00000353791.2:p.Val408Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1060G>A
  hgvsp: ENSP00000350362.2:p.Val354Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.808G>A
  hgvsp: ENSP00000442523.1:p.Val270Ile
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val408Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

1-44467260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467260
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467260
    reference: chr 1
allele count: 5
allele frequency: 4.145799475970946e-5
allele num: 120604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.807C>T
  hgvsp: ENST00000537678.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1059C>T
  hgvsp: ENST00000357730.2:c.1059C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.1002C>T
  hgvsp: ENST00000372306.3:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.807C>T
  hgvsp: ENST00000372307.3:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.669C>T
  hgvsp: ENST00000475075.2:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1221C>T
  hgvsp: ENST00000360584.2:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.1002C>T
  hgvsp: ENST00000372310.3:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser407Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

1-44467281-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467281
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467281
    reference: chr 1
allele count: 1
allele frequency: 8.400255367763179e-6
allele num: 119044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.981C>T
  hgvsp: ENST00000372306.3:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.648C>T
  hgvsp: ENST00000475075.2:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.786C>T
  hgvsp: ENST00000372307.3:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.786C>T
  hgvsp: ENST00000537678.1:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.981C>T
  hgvsp: ENST00000372310.3:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1038C>T
  hgvsp: ENST00000357730.2:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1200C>T
  hgvsp: ENST00000360584.2:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser400Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-44467290-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467290
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467290
    reference: chr 1
allele count: 1
allele frequency: 8.450228156160216e-6
allele num: 118340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.777C>T
  hgvsp: ENST00000372307.3:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.972C>T
  hgvsp: ENST00000372306.3:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1191C>T
  hgvsp: ENST00000360584.2:c.1191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.972C>T
  hgvsp: ENST00000372310.3:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.639C>T
  hgvsp: ENST00000475075.2:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.777C>T
  hgvsp: ENST00000537678.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1029C>T
  hgvsp: ENST00000357730.2:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val397Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

1-44467292-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467292
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467292
    reference: chr 1
allele count: 1
allele frequency: 8.471273910170611e-6
allele num: 118046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.775G>A
  hgvsp: ENSP00000361381.3:p.Val259Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.775G>A
  hgvsp: ENSP00000442523.1:p.Val259Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.970G>A
  hgvsp: ENSP00000361384.3:p.Val324Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.637G>A
  hgvsp: ENSP00000434460.1:p.Val213Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1189G>A
  hgvsp: ENSP00000353791.2:p.Val397Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1027G>A
  hgvsp: ENSP00000350362.2:p.Val343Ile
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.970G>A
  hgvsp: ENSP00000361380.3:p.Val324Ile
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val397Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

1-44467298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44467298
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44467298
    reference: chr 1
allele count: 1
allele frequency: 8.518032675173342e-6
allele num: 117398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361381
  ensembl transcript: ENST00000372307
  gene symbol: SLC6A9
  hgvsc: ENST00000372307.3:c.769G>A
  hgvsp: ENSP00000361381.3:p.Asp257Asn
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000353791
  ensembl transcript: ENST00000360584
  gene symbol: SLC6A9
  hgvsc: ENST00000360584.2:c.1183G>A
  hgvsp: ENSP00000353791.2:p.Asp395Asn
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361384
  ensembl transcript: ENST00000372310
  gene symbol: SLC6A9
  hgvsc: ENST00000372310.3:c.964G>A
  hgvsp: ENSP00000361384.3:p.Asp322Asn
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000361380
  ensembl transcript: ENST00000372306
  gene symbol: SLC6A9
  hgvsc: ENST00000372306.3:c.964G>A
  hgvsp: ENSP00000361380.3:p.Asp322Asn
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000442523
  ensembl transcript: ENST00000537678
  gene symbol: SLC6A9
  hgvsc: ENST00000537678.1:c.769G>A
  hgvsp: ENSP00000442523.1:p.Asp257Asn
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000350362
  ensembl transcript: ENST00000357730
  gene symbol: SLC6A9
  hgvsc: ENST00000357730.2:c.1021G>A
  hgvsp: ENSP00000350362.2:p.Asp341Asn
  variant of: http://identifiers.org/hgnc/11056
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196517
  ensembl protein: ENSP00000434460
  ensembl transcript: ENST00000475075
  gene symbol: SLC6A9
  hgvsc: ENST00000475075.2:c.631G>A
  hgvsp: ENSP00000434460.1:p.Asp211Asn
  variant of: http://identifiers.org/hgnc/11056
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp395Asn
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994305409860632e-5
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 1.813e0

QD
type: SiteQuality
SIO_000300: 1.166e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.618e0

DP
type: SiteQuality
SIO_000300: 2.956465e6

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.773e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.81e-1

QD
type: SiteQuality
SIO_000300: 1.093e1

DP
type: SiteQuality
SIO_000300: 2.956226e6

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.337e0

QD
type: SiteQuality
SIO_000300: 7.01e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 2.956286e6

VQSLOD
type: SiteQuality
SIO_000300: -6.415999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2091
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

QD
type: SiteQuality
SIO_000300: 1.106e1

MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
type: SiteQuality
SIO_000300: -2.019e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

FS
type: SiteQuality
SIO_000300: 7.557e0

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.67e-1

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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MQ
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.496402877697842e-5
allele num: 66720
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Latino
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
allele num: 16512
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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East Asian
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VQSLOD
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MQ
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
type: SiteQuality
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DP
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SIO_000300: 2.956524e6

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10404
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
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Latino
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Other
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DP
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SIO_000300: 2.9561e6

BaseQRankSum
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MQ
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.261e0

QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 66694
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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MQ
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66690
num of homozygotes: 0

Latino
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East Asian
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South Asian
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European (Finnish)
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Other
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African
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
type: SiteQuality
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

African
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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allele num: 66654
num of homozygotes: 0

Latino
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num of homozygotes: 0

QD
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FS
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VQSLOD
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MQ
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216693028348948e-4
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.309e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

DP
type: SiteQuality
SIO_000300: 2.949802e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 150
bin: 2.75e1
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GenotypeQuality
all individuals: 40308
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.677e0

MQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.385e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.394e0

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 2.948197e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 2673
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.16e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 2.947022e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.669e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.763e0

QD
type: SiteQuality
SIO_000300: 1.211e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 1924
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.505253677574302e-5
allele num: 66620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.372e1

DP
type: SiteQuality
SIO_000300: 2.943736e6

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2310
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.799e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.866e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

DP
type: SiteQuality
SIO_000300: 2.938045e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40337
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
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GenotypeQuality
all individuals: 2080
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variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 6024
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003995313767311e-5
allele num: 66578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.934493e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.49e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.084e0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2075
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GenotypeQuality
all individuals: 29
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GenotypeQuality
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GenotypeQuality
all individuals: 543
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variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.183e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 1.1135e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.957e-1

DP
type: SiteQuality
SIO_000300: 2.931119e6

QD
type: SiteQuality
SIO_000300: 1.264e1

GenotypeQuality
all individuals: 1875
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 212
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2054
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GenotypeQuality
all individuals: 1378
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GenotypeQuality
all individuals: 5597
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GenotypeQuality
all individuals: 1445
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variant carriers: 0

GenotypeQuality
all individuals: 2277
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 428
allele frequency: 4.113011724005382e-2
allele num: 10406
num of homozygotes: 8

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.567928730512249e-3
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.242390359050814e-4
allele num: 16098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 9.772672600433005e-4
allele num: 66512
num of homozygotes: 1

Latino
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allele count: 24
allele frequency: 2.072896873380549e-3
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

QD
type: SiteQuality
SIO_000300: 1.462e1

DP
type: SiteQuality
SIO_000300: 2.95155e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 183
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.222000995520159e-5
allele num: 16072
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.65348886149776e-4
allele num: 66526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.818e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

QD
type: SiteQuality
SIO_000300: 1.519e1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 2.936471e6

GenotypeQuality
all individuals: 1390
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 408
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GenotypeQuality
all individuals: 460
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GenotypeQuality
all individuals: 5867
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40373
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variant carriers: 4

GenotypeQuality
all individuals: 2285
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.208095356344674e-5
allele num: 16108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

QD
type: SiteQuality
SIO_000300: 1.302e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.602e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 2.936078e6

GenotypeQuality
all individuals: 1885
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variant carriers: 0

GenotypeQuality
all individuals: 909
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GenotypeQuality
all individuals: 180
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GenotypeQuality
all individuals: 562
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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QD
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 5.08e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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QD
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MQRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele num: 11578
num of homozygotes: 0

East Asian
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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DP
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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QD
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 1.11e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

African
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East Asian
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Latino
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.936217e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

East Asian
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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MQRankSum
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DP
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10398
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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ClippingRankSum
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QD
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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European (Finnish)
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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FS
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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allele num: 66582
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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FS
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InbreedingCoeff
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SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

MQ
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SIO_000300: 5.671e1

DP
type: SiteQuality
SIO_000300: 2.949893e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.004563468235859e-5
allele num: 66616
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.955825e6

FS
type: SiteQuality
SIO_000300: 9.970000000000001e0

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 3.79e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 2.57030541276081e-3
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 68
allele frequency: 5.876253024541998e-3
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 1.894633907835228e-3
allele num: 16362
num of homozygotes: 1

European (Non-Finnish)
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allele count: 858
allele frequency: 1.287978863936592e-2
allele num: 66616
num of homozygotes: 9

African
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allele count: 22
allele frequency: 2.115384615384615e-3
allele num: 10400
num of homozygotes: 0

Other
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allele frequency: 6.651884700665188e-3
allele num: 902
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 5.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

QD
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DP
type: SiteQuality
SIO_000300: 2.987801e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10400
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East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.003121623244087e-5
allele num: 66632
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South Asian
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allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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SIO_000300: -1.005e0

ReadPosRankSum
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InbreedingCoeff
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QD
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FS
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 2.978106e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16406
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 2.97844e6

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1402e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.683e0

VQSLOD
type: SiteQuality
SIO_000300: -7.085e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
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Latino
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allele count: 3
allele frequency: 2.592464569650881e-4
allele num: 11572
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.979267e6

BaseQRankSum
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: 1.67e0

QD
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66652
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African
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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African
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Other
type: Population
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allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.501530520376928e-5
allele num: 66644
num of homozygotes: 0

QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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Latino
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allele frequency: 8.641548565502938e-5
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num of homozygotes: 0

European (Finnish)
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South Asian
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European (Non-Finnish)
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Other
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QD
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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Other
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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BaseQRankSum
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FS
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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SIO_000300: 2.981442e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.887391722810395e-4
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.000120004800192e-5
allele num: 66664
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 4.543e0

QD
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SIO_000300: 1.289e1

DP
type: SiteQuality
SIO_000300: 2.981741e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 1.039e0

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.44e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.465e0

MQ
type: SiteQuality
SIO_000300: 5.858e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.075334143377886e-5
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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QD
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.07e-1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.037298019681691e-4
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -6.22e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66674
num of homozygotes: 0

South Asian
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African
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allele frequency: 3.852080123266564e-4
allele num: 10384
num of homozygotes: 0

MQRankSum
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VQSLOD
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DP
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 66684
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FS
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MQ
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Other
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East Asian
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European (Finnish)
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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DP
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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FS
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Latino
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East Asian
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European (Finnish)
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QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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MQ
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MQRankSum
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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QD
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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European (Non-Finnish)
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African
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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European (Non-Finnish)
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VQSLOD
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MQ
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DP
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

FS
type: SiteQuality
SIO_000300: 7.261e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1868
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

FS
type: SiteQuality
SIO_000300: 2.086e0

VQSLOD
type: SiteQuality
SIO_000300: -3.103e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.456e0

QD
type: SiteQuality
SIO_000300: 1.333e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.094588005850804e-5
allele num: 16408
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 2.982812e6

QD
type: SiteQuality
SIO_000300: 1.113e1

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

ClippingRankSum
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SIO_000300: -4.38e-1

FS
type: SiteQuality
SIO_000300: 5.27e0

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.242e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 21
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.508183920473317e-5
allele num: 66594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.141e1

DP
type: SiteQuality
SIO_000300: 2.982645e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7930
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.746e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.424e1

DP
type: SiteQuality
SIO_000300: 2.976718e6

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.125e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.46e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 629
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1368
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variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313208420078649e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.986271e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.7e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.02e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 71

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7785
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 66
allele frequency: 9.929590178732624e-4
allele num: 66468
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.829051574270813e-4
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 2.986271e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504981488727689e-5
allele num: 66446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.930874686232864e-4
allele num: 10358
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.215813028344107e-5
allele num: 16088
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.931e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.277e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.063e0

DP
type: SiteQuality
SIO_000300: 2.977583e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65984
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.122e0

DP
type: SiteQuality
SIO_000300: 2.9491e6

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-2

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.308e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.839945280437756e-5
allele num: 14620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

QD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 1.367e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.939625260235948e-5
allele num: 14410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.556e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -1.462e0

QD
type: SiteQuality
SIO_000300: 1.702e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.95e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

DP
type: SiteQuality
SIO_000300: 2.932429e6